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High nutrient pulses, tidal mixing and biological response in a small California estuary: Variability in nutrient concentrations from decadal to hourly time scales

Elkhorn Slough is a small estuary in Central California, where nutrient inputs are dominated by runoff from agricultural row crops, a golf course, and residential development. We examined the variability in nutrient concentrations from decadal to hourly time scales in Elkhorn Slough to compare forcing by physical and biological factors. Hourly data were collected using in situ nitrate analyzers and water quality data sondes, and two decades of monthly monitoring data were analyzed. Nutrient concentrations increased from the mid 1970s to 1990s as pastures and woodlands were converted to row crops and population increased in the watershed. Climatic variability was also a significant factor controlling interannual nutrient variability, with higher nutrient concentrations during wet than drought years. Elkhorn Slough has a Mediterranean climate with dry and rainy seasons. Dissolved inorganic nitrogen (DIN) concentrations were relatively low (10-70 ??mol L-1) during the dry season and high (20-160 ??mol L-1) during the rainy season. Dissolved inorganic phosphorus (DIP) concentrations showed the inverse pattern, with higher concentrations during the dry season. Pulsed runoff events were a consistent feature controlling nitrate concentrations during the rainy season. Peak nitrate concentrations lagged runoff events by 1 to 6 days. Tidal exchange with Monterey Bay was also an important process controlling nutrient concentrations, particularly near the mouth of the Slough. Biological processes had the greatest effect on nitrate concentrations during the dry season and were less important during the rainy season. While primary production was enhanced by nutrient pulses, chlorophyll a concentrations were not. We believe that the generally weak biological response compared to the strong physical forcing in Elkhorn Slough occurred because the short residence time and tidal mixing rapidly diluted nutrient pulses. ?? 2006 Elsevier Ltd. All rights reserved.

Estuarine, Coastal and Shelf Science

Nature-based solutions could offset coastal squeeze of tidal wetlands from sea-level rise on the U.S. Pacific coast

In this study, we explored the opportunities for tidal wetland landward migration in response to sea-level rise on the Pacific Coast of the United States. By employing a systematic spatial approach, we quantified the available space for wetland migration with sea-level rise across 61 estuarine drainage areas. Although many of the existing tidal wetlands are small patches, our analyses show that 63% of the estuaries lacked the landward migration space needed to replace current tidal wetland extent, thereby threatening a wide range of protected species and ecosystem services. Developed lands and steep topography represent common barriers to migration along the Pacific coast, especially in central and southern California. The available wetland migration space consists primarily of agriculture, pasture, and freshwater wetlands, with most of the area available for migration occurring in just a few watersheds. In most watersheds tidal wetland migration would only occur with human intervention or facilitation. The greatest amount of area available for wetland migration was in the San Francisco Bay-Delta and Columbia River estuaries, together accounting for 58% of all available migration space on the Pacific Coast. Nature-based solutions to reduce tidal wetland loss from sea-level rise can include restoration in suitable areas, removal of barriers to tidal wetland migration, and elevation building approaches. Tidal wetland restoration opportunities could increase area by 59%, underscoring it as a plausible approach to prevent tidal wetland loss in those estuaries and a viable Nature-based solution. 54% of estuaries building elevations of existing tidal wetlands may be the most feasible approach needed. Our analyses illustrate the importance of management efforts that use Nature-based approaches to prevent tidal wetland ecosystem and species loss over the coming decades from sea-level rise.

Pacific Coast

Hydrologic monitoring networks in the Death Valley Regional Flow System, Nye County, Nevada and Inyo County, California

Introduction Water is an important resource in the arid southwest region of the United States where there is a limited supply of surface water and groundwater. In the Death Valley regional groundwater flow system (DVRFS) in southern Nevada and eastern California, groundwater is the main source of supply for agricultural, commercial, and domestic water needs. For over four decades, the United States Geological Survey (USGS) Nevada Water Science Center (NVWSC) has assisted environmental programs with the collection of hydrologic information within the DVRFS. Three hydrologic networks, managed in cooperation with local (Nye County, Nev., and Inyo County, Calif.) and federal (Bureau of Land Management, Fish and Wildlife Service, National Park Service, U.S. Department of Energy National Nuclear Security Administration) agencies, are used to actively monitor wells and springs in the region.

California, Nevada

Using object-based image analysis to conduct high-resolution conifer extraction at regional spatial scales

The distribution and abundance of pinyon ( Pinus monophylla ) and juniper ( Juniperus osteosperma, J. occidentalis ) trees (hereinafter, "pinyon-juniper") in sagebrush ( Artemisia spp.) ecosystems of the Great Basin in the Western United States has increased substantially since the late 1800s. Distributional expansion and infill of pinyon-juniper into sagebrush ecosystems threatens the ecological function and economic viability of these ecosystems within the Great Basin, and is now a major contemporary challenge facing land and wildlife managers. Particularly, pinyon-juniper encroachment into intact sagebrush ecosystems has been identified as a primary threat facing populations of greater sage-grouse ( Centrocercus urophasianus ; hereinafter, "sage-grouse"), which is a sagebrush obligate species. Even seemingly innocuous scatterings of isolated pinyon-juniper in an otherwise intact sagebrush landscape can negatively affect survival and reproduction of sage-grouse. Therefore, accurate and high-resolution maps of pinyon-juniper distribution and abundance (indexed by canopy cover) across broad geographic extents would help guide land management decisions that better target areas for pinyon-juniper removal projects (for example, fuel reduction, habitat improvement for sage-grouse, and other sagebrush species) and facilitate science that further quantifies ecological effects of pinyon-juniper encroachment on sage-grouse populations and sagebrush ecosystem processes . Hence, we mapped pinyon-juniper (referred to as conifers for actual mapping) at a 1 × 1-meter (m) high resolution across the entire range of previously mapped sage-grouse habitat in Nevada and northeastern California. We used digital orthophoto quad tiles from National Agriculture Imagery Program (2010, 2013) as base imagery, and then classified conifers using automated feature extraction methodology with the program Feature Analyst ™ . This method relies on machine learning algorithms that extract features from imagery based on their spectral and spatial signatures. We classified conifers in 6,230 tiles and then tested for errors of omission and commission using confusion matrices. Accuracy ranged from 79.1 to 96.8, with an overall accuracy of 84.3 percent across all mapped areas. An estimated accuracy coefficient (kappa) indicated substantial to nearly perfect agreement, which varied across mapped areas. For this mapping process across the entire mapping extent, four sets of products are available at https://doi.org/10.5066/F7348HVC , including (1) a shapefile representing accuracy results linked to mapping subunits; (2) binary rasters representing conifer presence or absence at a 1 × 1 m resolution; (3) a 30 × 30 m resolution raster representing percentages of conifer canopy cover within each cell from 0 to 100; and (4) 1 × 1 m resolution canopy cover classification rasters derived from a 50-m-radius moving window analysis. The latter two products can be reclassified in a geographic information system (GIS) into user-specified bins to meet different objectives, which include approximations for phases of encroachment. These products complement, and in some cases improve upon, existing conifer maps in the Western United States, and will help facilitate sage-grouse habitat management and sagebrush ecosystem restoration.

California, Nevada

Simulation of groundwater and surface-water resources of the San Antonio Creek Valley watershed, Santa Barbara County, California

In the San Antonio Creek Valley watershed (SACVW), western Santa Barbara County, California, groundwater is the primary source of water for agricultural irrigation, the town of Los Alamos, and supplemental water to Vandenberg Space Force Base (VSFB). Groundwater pumpage has increased since the 1970s as non-irrigated agricultural land has been converted to irrigated land and as local pumping for municipal use has increased. This increase in groundwater use has resulted in declining groundwater levels, adjustments in surface-water flows and species habitats, and changes in water quality. Water managers are addressing the challenges of meeting this increased demand while maintaining sustainable groundwater supplies. To address these challenges, Santa Barbara County Water Agency, Vandenberg Space Force Base (VSFB), and the U.S. Geological Survey (USGS) undertook a cooperative study to characterize the integrated hydrologic system of the SACVW and develop tools to better understand and manage the groundwater system. The objectives of this study were to improve the understanding of the integrated hydrologic system and incorporate the understanding into an integrated groundwater and surface-water flow model that can be used to help manage the water resources in the SACVW. The San Antonio Creek integrated model (SACIM) was developed using the USGS coupled groundwater and surface-water flow model to simulate the hydrologic system of the SACVW and provide annual and average water budgets for 1948–2018 water years. Results from the SACIM indicated that between 1948 and 2018, total groundwater from storage (storage depletion) for the period was 453,300 acre-feet (acre-ft). Agricultural pumpage was the largest discharge and accounted for a total of 1,020,000 acre-ft of groundwater. Increased pumpage since the mid-1980s (of which agricultural pumpage is the primary component) is tied to an increased rate of storage depletion and reduced rates of groundwater evapotranspiration and surface leakage (groundwater discharge to the surface and soil zone). The increased pumpage also reduced subsurface inflow to Barka Slough, resulting in a decline in upward flow through the underlying hydrogeologic units and surface leakage. In addition to quantifying historical changes in the integrated hydrologic system, the SACIM is a tool than can be used by water managers to evaluate the effects of different climatic and hydrologic conditions and management strategies.

California

Hindcast of water availability in regional aquifer systems using MODFLOW Farm Process

Coupled groundwater and surface-water components of the hydrologic cycle can be simulated by the Farm Process for MODFLOW (MF-FMP) in both irrigated and non-irrigated areas and aquifer-storage and recovery systems. MF-FMP is being applied to three productive agricultural regions of different scale in the State of California, USA, to assess the availability of water and the impacts of alternative management decisions. Hindcast simulations are conducted for similar periods from the 1960s to near recent times. Historical groundwater pumpage is mostly unknown in one region (Central Valley) and is estimated by MF-FMP. In another region (Pajaro Valley), recorded pumpage is used to calibrate model-estimated pumpage. Multiple types of observations are used to estimate uncertain parameters, such as hydraulic, land-use, and farm properties. MF-FMP simulates how climate variability and water-import availability affect water demand and supply. MF-FMP can be used to predict water availability based on anticipated changes in anthropogenic or natural water demands. Keywords groundwater; surface-water; irrigation; water availability; response to climate variability/change

Conference Paper

Slender salamanders (genus Batrachoseps) reveal Southern California to be a center for the diversification, persistence, and introduction of salamander lineages

Background The southern California biodiversity hotspot has had a complex geological history, with both plate tectonic forces and sea level changes repeatedly reconfiguring the region, and likely driving both lineage splittings and extinctions. Here we investigate patterns of genetic divergence in two species of slender salamanders (Plethodontidae: Batrachoseps ) in this region. The complex geological history in combination with several organismal traits led us to predict that these species harbor multiple ancient mitochondrial lineages endemic to southern California. These species belong to a clade characterized by fine-scale mitochondrial structure, which has been shown to track ancient splits. Both focal species, Batrachoseps major and B. nigriventris , are relatively widely distributed in southern California, and estimated to have persisted there across millions of years. Recently several extralimital populations of Batrachoseps were found in the San Joaquin Valley of California, a former desert area that has been extensively modified for agriculture. The origins of these populations are unknown, but based on morphology, they are hypothesized to result from human-mediated introductions of B. major . Methods We sequenced the mitochondrial gene cytochrome b from a geographically comprehensive sampling of the mitochondrial lineages of B. major and B. nigriventris that are endemic to southern California. We used phylogenetic analyses to characterize phylogeographic structure and identify mitochondrial contact zones. We also included the San Joaquin Valley samples to test whether they resulted from introductions. We used a bootstrap resampling approach to compare the strength of isolation-by-distance in both Batrachoseps species and four other salamander species with which they co-occur in southern California. Results The northern lineage of B. major harbors at least eight deeply differentiated, geographically cohesive mitochondrial subclades. We identify geographic contact between many of these mtDNA lineages and some biogeographic features that are concordant with lineage boundaries. Batrachoseps nigriventris also has multiple deeply differentiated clades within the region. Comparative analyses highlight the smaller spatial scales over which mitochondrial divergence accumulates in Batrachoseps relative to most other salamander species in southern California. The extralimital populations of Batrachoseps from the San Joaquin Valley are assigned to B. major and are shown to result from at least two independent introductions from different source populations. We also suggest that B. major on Catalina Island, where it is considered native, may be the result of an introduction. Some of the same traits that facilitate the build-up of deep phylogeographic structure in Batrachoseps likely also contribute to its propensity for introductions, and we anticipate that additional introduced populations will be discovered.

California

Integrated climate and land use change scenarios for California rangeland ecosystem services: wildlife habitat, soil carbon, and water supply

Context In addition to biodiversity conservation, California rangelands generate multiple ecosystem services including livestock production, drinking and irrigation water, and carbon sequestration. California rangeland ecosystems have experienced substantial conversion to residential land use and more intensive agriculture. Objectives To understand the potential impacts to rangeland ecosystem services, we developed six spatially explicit (250 m) climate/land use change scenarios for the Central Valley of California and surrounding foothills consistent with three Intergovernmental Panel on Climate Change emission scenario narratives. Methods We quantified baseline and projected change in wildlife habitat, soil organic carbon (SOC), and water supply (recharge and runoff). For six case study watersheds we quantified the interactions of future development and changing climate on recharge, runoff and streamflow, and precipitation thresholds where dominant watershed hydrological processes shift through analysis of covariance. Results The scenarios show that across the region, habitat loss is expected to occur predominantly in grasslands, primarily due to future development (up to a 37 % decline by 2100), however habitat loss in priority conservation errors will likely be due to cropland and hay/pasture expansion (up to 40 % by 2100). Grasslands in the region contain approximately 100 teragrams SOC in the top 20 cm, and up to 39 % of this SOC is subject to conversion by 2100. In dryer periods recharge processes typically dominate runoff. Future development lowers the precipitation value at which recharge processes dominate runoff, and combined with periods of drought, reduces the opportunity for recharge, especially on deep soils. Conclusion Results support the need for climate-smart land use planning that takes recharge areas into account, which will provide opportunities for water storage in dry years. Given projections for agriculture, more modeling is needed on feedbacks between agricultural expansion on rangelands and water supply.

California

Multiple-well monitoring site adjacent to the Midway- Sunset and Buena Vista Oil Fields, Kern County, California

Groundwater quality in and around oil fields in the Southern San Joaquin Valley is of interest to many California residents that rely heavily on groundwater for domestic, commercial, and agricultural use. To help assess the effects of historical oil-field activities and natural geologic sources on groundwater near the southwest margins of the Kern County Groundwater Subbasin, a multiple-well monitoring site was installed near the administrative boundary between the Midway-Sunset and Buena Vista Oil Fields in Kern County, California. The installation of the Midway-Sunset Buena Vista multiple-well monitoring site (MSBV) supports regional analysis of the relations of oil and gas sources to groundwater quality by providing information about the geology, hydrology, geophysical properties, and water quality of the alluvial and upper Tulare aquifers in areas where groundwater data were limited. Data collected from the site included drill cuttings, whole core samples, sidewall core samples, mud-gas analysis, borehole geophysical logs, depth to water measurements, and water quality samples. Whole cores were scanned using dual energy computed tomography. Subsamples of selected cores were analyzed for density, porosity, specific retention, and bulk minerology. Thin sections of the subsamples were prepared, photographed, and examined. Two samples were analyzed using scanning electron microscope technology to examine the microporosity of diatomite laden sediment. Instrumentation installed in the wells collect hourly depth to water measurements. Analysis of the data show there is 355 feet of alluvium overlying the Tulare Formation at the well site. The contact between the two formations is an aquitard resulting in a perched aquifer in the alluvium and unconfined aquifer in the Tulare Formation. The alluvium is more heterogenous and finer grained than the Tulare Formation resulting in markedly higher porosity in the alluvium compared to the Tulare Formation. Higher specific retention observed in the alluvium is attributed to the finer grained sediment and greater abundance of reworked diatomite (as represented by opal-CT [cristobalite-tridymite]) compared to the Tulare Formation. Total dissolved solids (TDS) approached or exceeded 10,000 milligrams per liter (mg/L) in the alluvium from approximately 176 to 242 feet below land surface and at the top of the Amnicola clay at approximately 670 feet below land surface within the Tulare Formation. Elevated TDS, chloride, and boron concentrations in the alluvium and on top of the Amnicola clay likely reflect groundwater that is mixed with oil-field water. Water chemistry and modern-aged groundwater in the alluvial monitoring well (MSBV #3) are consistent with the oil-field water in the alluvium being derived from documented historical surface disposal of oil-field water upslope (northwest) of the site. Water chemistry and pre-modern groundwater age in the deeper Tulare monitoring well (MSBV #1) on top of the Amnicola clay are consistent with oil-field fluids derived from upslope natural geologic sources or old oil wells that leak in the subsurface. Shallow groundwater in the Tulare (MSBV #2) is not affected by mixing with oil-field sources.

EarthArXiv

Boron, molybdenum, and selenium in aquatic food chains from the lower San Joaquin River and its tributaries, California

Boron (B), molybdenum (Mo), and selenium (Se) were measured in water, sediment, particulate organic detritus, and in various biota—filamentous algae, net plankton, macroinvertebrates, and fishes—to determine if concentrations were elevated from exposure to agricultural subsurface (tile) drainage during the spring and fall 1987, in the San Joaquin River, California. Concentrations of B and Se, but not Mo, were higher in most samples from reaches receiving tile drainage than in samples from reaches receiving no tile drainage. Maximum concentrations of Se in water (0.025 μg/mL), sediment (3.0 μg/g), invertebrates (14 μg/g), and fishes (17 μg/g) measured during this study exceeded concentrations that are detrimental to sensitive warmwater fishes. Toxic threshold concentrations of B and Mo in fishes and their foods have not been identified. Boron and Mo were not biomagnified in the aquatic food chain, because concentrations of these two elements were usually higher in filamentous algae and detritus than in invertebrates and fishes. Concentrations of Se were lower in filamentous algae than in invertebrates and fishes; however, concentrations of Se in or on detritus were similar to or higher than in invertebrates and fishes. These observations suggest that high concentrations of Se accumulated in invertebrates and fishes through food-chain transfer from Se-enriched detritus rather than from filamentous algae.

Archives of Environmental Contamination and Toxico

Method for Estimating Annual Atrazine Use for Counties in the Conterminous United States, 1992-2007

A method was developed to estimate annual atrazine use during 1992 to 2007 on sixteen crops and four agricultural land uses. For each year, atrazine use was estimated for all counties in the conterminous United States (except California) by combining (1) proprietary data from the Doane Marketing Research-Kynetec (DMRK) AgroTrak database on the mass of atrazine applied to agricultural crops, (2) county harvested crop acreage, by county, from the 1992, 1997, 2002, and 2007 Censuses of Agriculture, and (3) annual harvested crop acreage from National Agriculture Statistics Service (NASS) for non-Census years. DMRK estimates of pesticide use on individual crops were derived from surveys of major field crops and selected specialty crops in multicounty areas referred to as Crop Reporting Districts (CRD). The CRD-level atrazine-use estimates were disaggregated to obtain county-level application rates by dividing the mass (pounds) of pesticides applied to a crop by the acreage of that crop in the CRD to yield a rate per harvested acre. When atrazine-use estimates were not available for a CRD, crop, or year, an estimated rate was developed following a hierarchy of decision rules that checked first for the availability of a crop application rate from surveyed atrazine application rate(s) for adjacent CRDs for a specific year, and second, the rates from surveyed CRDs within for U.S. Department of Agriculture Farm Production Regions for a specific year or multiple years. The estimation method applied linear interpolation to estimate crop acreage for years when harvested acres for a crop and county were not reported in either the Census of Agriculture or the NASS database, but were reported by these data sources for other years for that crop and county. Data for atrazine use for the counties in California was obtained from farmers' reports of pesticide use collected and published by the California Department of Pesticide Regulation-Pesticide Use Reporting (DPR-PUR) because these data are more complete than DMRK survey data. National and state annual atrazine-use totals derived by this method were compared with other published pesticide-use estimates and were highly correlated. The method developed is designed to be applicable to other pesticides for which there are similar data; however, for some pesticides that are applied to specialty crops, fewer surveys are usually available to estimate application rates and there are a greater number of years with unreported crop acreage, potentially resulting in greater uncertainty in use

Scientific Investigations Report

Evaluation of artificial recharge in the Mojave River Ground-Water Basin, California

The Mojave River Basin relies almost entirely on ground water to meet the needs of its growing population and agriculture, which has resulted in overdraft conditions. Some of the ground-water management alternatives being proposed to mitigate the effects of overdraft include artificial recharge using water from the California State Water Project (SWP) and using SWP water in lieu of ground-water pumpage. A calibrated ground-water flow model was used to evaluate six proposed water-management alternatives using SWP water during a 20-year simulation period, 2000-2019, using constant rates from 1999 for recharge and pumpage (with the exception of recharge derived from Mojave River streamflows which were variable). The measured streamflow for the period of 1970-1989 was used to simulate the Mojave River streamflow. Water-management alternative 1 assumed that none of the Mojave Water Agency allocation of SWP water was available for mitigation measures and resulted in increases in hydraulic head in the floodplain aquifer in years of above-average streamflow (2008-2010, 2013) and decreases in years of below average streamflow. In general, simulated hydraulic heads in the regional aquifer declined with the exception of the El Mirage and Harper Lake areas. Also, average storage depletion for the entire ground-water basin over the 20-year simulation was 40,940 acre-feet per year. Water-management alternative 2 assumed that 30,000 acre-feet per year of SWP water was artificially recharged at Rock Springs Road Outlet (RSO). By 2019, the simulated hydraulic heads were as much as 75 feet higher in the Alto at the recharge site, 24 feet higher in the Transition zone, 15 feet higher in the Centro, and 17 feet higher in the Baja model subareas than the hydraulic heads resulting from water-management alternative 1. Water-management alternative 2 affected simulated hydraulic heads by as much as 5 feet in an area totalling 290 square miles; most of the change occurred in the Alto and Baja model subareas. Average storage depletion for water-management alternative 2 for the entire ground-water basin for the 20-year simulation period was 15,880 acre-feet per year, 25,060 acre-feet per year less than water-management alternative 1. Also, water-management alternative 2 indicated that the artificial recharge at RSO resulted in less simulated ground-water recharge from stream leakage in the Alto model subarea, which led to greater streamflow at the Lower Narrows, Barstow, and Afton Canyon streamflow gages. This increased streamflow resulted in an increase in simulated ground-water recharge from stream leakage, primarily in the Centro and Baja model subareas. Water-management alternative 3 assumed that 4,000 acre-feet per year of SWP water was artificially recharged at Manzanita and Oro Grande Washes (a total of 8,000 acre-feet per year) in the Alto model subarea. By 2019, the simulated hydraulic heads beneath the recharge sites were as much as 278 feet higher than heads resulting from water-management alternative 1. Changes in simulated hydraulic head greater than 5 feet covered almost 138 square miles in the Alto model subarea. Water-management alternative 3 had little effect on simulated hydraulic heads in the other model subareas. Model results indicated that the average storage depletion for the entire ground-water basin during the 20-year simulation was 32,940 acre-feet per year, about 8,000 acre-feet per year less than water-management alternative 1. Water-management alternative 3 had essentially no effect on simulated streamflows during the 20-year simulation period and, therefore, little effect on simulated net stream leakage. Water-management alternative 4 assumed 10,000 acre-feet per year of SWP water was artificially recharged near Newberry Springs in the Baja subarea. By 2019, the simulated hydraulic heads beneath the recharge site were as much as 193 ft higher in the Baja model subarea than the hydraulic heads resulting from water-management alternative 1. Increases in simulated hydraulic heads greater than 5 feet extended about 5 miles east of the Calico-Newberry Fault and affected about 71 square miles east of the Calico-Newberry Fault. Water-management alternative 4 had no effect on simulated hydraulic heads in the other model subareas. Model results indicated that the average storage depletion for the entire ground-water basin over the 20-year simulation period was 30,860 acre-feet per year, about 10,000 acre-feet per year less than water-management 1. Water-management alternative 4 had little effect on simulated streamflows during the 20-year simulation period and, therefore, essentially no effect on simulated net stream leakage. Water-management alternative 5 assumed 23,800 acre-feet per year of SWP water was delivered directly to municipal water districts in lieu of pumpage in the Alto model subarea. By 2019, the simulated hydraulic heads were as much as 98 feet higher in the Alto and 7 feet higher in the Centro and Baja model subareas than hydraulic heads resulting from water-management alternative 1. Changes in simulated hydraulic head were greater than 5 feet in an area of almost 245 square miles. Most of the change in simulated hydraulic heads occurred in the regional aquifer west of the Mojave River in the Alto model subarea. Average storage depletion for the entire ground-water basin over the 20-year simulation period was 19,170 acre-feet per year, 21,770 acre-feet per year less than water-management alternative 1. Results from water-management alternative 5 were similar to those of water-management alternative 2 in that they indicated that the in lieu replacement of ground water resulted in less simulated ground-water recharge from stream leakage in the Alto model subarea, and thereby streamflow at the Lower Narrows and Barstow gages. This increased streamflow resulted in an increase in simulated ground-water recharge from stream leakage primarily in the Baja model subarea. Water-management alternative 6 assumed 3,800 acre-feet per year of SWP water was delivered directly to municipal water districts in lieu of pumpage in the Transition zone model subarea. By 2019, the simulated hydraulic heads were as much as 30 feet higher in the Transition zone model subarea than the hydraulic heads resulting from water-management alternative 1. Changes in simulated hydraulic head were greater than 5 feet in an area of almost 16 square miles in the Transition zone model subarea. Water-management alternative 6 had little effect on simulated hydraulic heads in the other model subareas. Average storage depletion for the entire ground-water basin over the 20-year simulation period was 38,090 acre-feet per year, 2,850 acre-feet per year less than water-management alternative 1. Also, simulation of water-management alternative 6 indicated in-lieu replacement of ground water resulted in less ground-water recharge from stream leakage in the Alto, Transition zone, and Centro model subareas, and thereby greater streamflow at the Barstow gage. This increased streamflow resulted in an increase in simulated ground-water recharge from stream leakage, primarily in the Baja model subarea.

Open-File Report

Detection and measurement of land subsidence using interferometric synthetic aperture radar and Global Positioning System, San Bernardino County, Mojave Desert, California

Land subsidence associated with ground-water-level declines has been recognized as a potential problem in parts of the Mojave Desert, California. Ground water has been the primary source of domestic, agricultural, and municipal water supplies in the desert since the early 1900s. Pumping of ground water from the Mojave River and Morongo ground-water basins in the southwestern Mojave Desert resulted in water-level declines of more than 30 meters (100 feet) between the 1950s and the 1990s. A Global Positioning System (GPS) survey of a geodetic network was used to determine the location, extent, and magnitude of vertical land-surface changes in Lucerne Valley in the Morongo ground-water basin. The GPS survey was conducted in 1998 to estimate historical elevation changes by comparing GPS-derived elevations with historical elevations (which were available for some of the monuments in the network as early as 1944) and to establish baseline values that can be used for comparisons with future GPS surveys. The GPS measurements indicated that about 600 millimeters (2 feet) [plus or minus 1,500 millimeters (5 feet)] of subsidence occurred at three of the monuments between 1969 and 1998 but that very little to no vertical change in position occurred at seven other monuments in the network. Water levels in the area of subsidence in Lucerne Valley declined about 15 meters (50 feet) during 1970-98. Interferometric synthetic aperture radar (InSAR) methods were used to characterize vertical land-surface changes in the Mojave River and Morongo ground-water basins during various intervals of time between 1992 and 1999. Interferograms, InSAR-generated displacement maps, show that subsidence ranging from 45 to 90 mm (0.15 to 0.3 ft) occurred in four areas of these two ground-water basins--the El Mirage, Lockhart-Harper Lake (dry), Newberry Springs, and Lucerne Valley areas. Some of the InSAR measurements were affected by the earthquakes at Landers and Hector Mine, California, and by atmospheric artifacts. Water-level data were examined for areas undergoing vertical land-surface changes to determine whether the vertical land-surface changes may be related to aquifer-system compaction caused by ground-water-level changes. Temporally relevant water-level data were sparse for some areas, particularly the El Mirage and Lockhart-Harper Lake (dry) areas. Water levels in wells proximate to the subsiding areas generally declined between 1992 and 1999; water levels in some wells proximate to the subsiding areas experienced seasonal periods of declines and recoveries.

California

Mercury bioaccumulation in fish in a region affected by historic gold mining: The South Yuba River, Deer Creek, and Bear River watersheds, California, 1999

Mercury that was used historically for gold recovery in mining areas of the Sierra Nevada continues to enter local and downstream water bodies, including the Sacramento Delta and the San Francisco Bay of northern California. Methylmercury is of particular concern because it is the most prevalent form of mercury in fish and is a potent neurotoxin that bioaccumulates at successive trophic levels within food webs. In April 1999, the U.S. Geological Survey, in cooperation with several other agencies the Forest Service (U.S. Department of Agriculture), the Bureau of Land Management, the U.S. Environmental Protection Agency, the California State Water Resources Control Board, and the Nevada County Resource Conservation District began a pilot investigation to characterize the occurrence and distribution of mercury in water, sediment, and biota in the South Yuba River, Deer Creek, and Bear River watersheds of California. Biological samples consisted of semi-aquatic and aquatic insects, amphibians, bird eggs, and fish. Fish were collected from 5 reservoirs and 14 stream sites during August through October 1999 to assess the distribution of mercury in these watersheds. Fish that were collected from reservoirs included top trophic level predators (black basses, Micropterus spp.) intermediate trophic level predators [sunfish (blue gill, Lepomis macrochirus; green sunfish, Lepomis cyanellus; and black crappie, Poxomis nigromaculatus)] and benthic omnivores (channel catfish, Ictularus punctatus). At stream sites, the species collected were upper trophic level salmonids (brown trout, Salmo trutta) and upper-to-intermediate trophic level salmonids (rainbow trout, Oncorhynchus mykiss). Boneless and skinless fillet portions from 161 fish were analyzed for total mercury; 131 samples were individual fish, and the remaining 30 fish were combined into 10 composite samples of three fish each of the same species and size class. Mercury concentrations in samples of black basses (Micropterus spp.), including largemouth, smallmouth, and spotted bass, ranged from 0.20 to 1.5 parts per million (ppm), wet basis. Mercury concentrations in sunfish ranged from less than 0.10 to 0.41 ppm (wet). Channel catfish had mercury concentrations from 0.16 to 0.75 ppm (wet). The range of mercury concentrations observed in rainbow trout was from 0.06 to 0.38 ppm (wet), and in brown trout was from 0.02 to 0.43 ppm (wet). Mercury concentrations in trout were greater than 0.3 ppm in samples from three of 14 stream sites. Mercury at elevated concentrations may pose a health risk to piscivorous wildlife and to humans who eat fish on a regular basis. Data presented in this report may be useful to local, state, and federal agencies responsible for assessing the potential risks associated with elevated levels of mercury in fish in the South Yuba River, Deer Creek, and Bear River watersheds.

California

Conservation Effects Assessment Project-Wetlands assessment in California's Central Valley and Upper Klamath River Basin

Executive Summary-Ecosystem Services Derived from Wetlands Reserve Program Conservation Practices in California's Central Valley and Oregon's Upper Klamath River Basin. The Wetlands Reserve Program (WRP) is one of several programs implemented by the U.S. Department of Agriculture (USDA). Since the WRP's inception in 1990, it has resulted in the restoration of approximately 29,000 hectares in California's Central Valley (CCV) and roughly 12,300 hectares in Oregon's Upper Klamath River Basin (UKRB). Both the CCV and UKRB are agricultural dominated landscapes that have experienced extensive wetland losses and hydrological alteration. Restored habitats in the CCV and UKRB are thought to provide a variety of ecosystem services, but little is known about the actual benefits afforded. The U.S. Geological Survey (USGS) California Cooperative Fish and Wildlife Unit in collaboration with the USDA Natural Resources Conservation Service surveyed 70 WRP sites and 12 National Wildlife Refuge sites in the CCV, and 11 sites in the UKRB to estimate ecosystem services provided. In the CCV, sites were selected along three primary gradients; (1) restoration age, (2) management intensity, and (3) latitude (climate). Sites in the UKRB were assessed along restoration age and management intensity gradients where possible. The management intensity gradient included information about the type and frequency of conservation practices applied at each site, which was then ranked into three categories that differentiated sites primarily along a hydrological gradient. Information collected was used to estimate the following ecosystem services: Soil and vegetation nutrient content, soil loss reduction, floodwater storage as well as avian, amphibian, fish, and pollinator use and habitat availability. Prior to this study, very little was known about WRP habitat morphology in the CCV and UKRB. Therefore in this study, we described these habitats and related them to ecosystem services provided. Our results indicate that although WRP in the CCV and UKRB provide a number of benefits, there may be management mediated trade-offs among ecosystem services. In this report, we considered ecosystem services at the site-specific scale; however, future work will extend to include effects of WRP relative to surrounding cropland.

California

Sea-level rise and coastal groundwater inundation and shoaling at select sites in California, USA

Study region The study region spans coastal California, USA, and focuses on three primary sites: Arcata, Stinson Beach, and Malibu Lagoon. Study focus 1 m and 2 m sea-level rise (SLR) projections were used to assess vulnerability to SLR-driven groundwater emergence and shoaling at select low-lying, coastal sites in California. Separate and combined inundation scenarios for SLR and groundwater emergence were developed using digital elevation models of study site topography and groundwater surfaces constructed from well data or published groundwater level contours. New hydrological insights for the region SLR impacts are a serious concern in coastal California which has a long (∼1800 km) and populous coastline. Information on the possible importance of SLR-driven groundwater inundation in California is limited. In this study, the potential for SLR-driven groundwater inundation at three sites (Arcata, Stinson Beach, and Malibu Lagoon) was investigated under 1 m and 2 m SLR scenarios. These sites provide insight into the vulnerability of Northern California coastal plains, coastal developments built on beach sand or sand spits, and developed areas around coastal lagoons associated with seasonal streams and berms. Northern California coastal plains with abundant shallow groundwater likely will see significant and widespread groundwater emergence, while impacts along the much drier central and southern California coast may be less severe due to the absence of shallow groundwater in many areas. Vulnerability analysis is hampered by the lack of data on shallow coastal aquifers, which commonly are not studied because they are not suitable for domestic or agricultural use. Shallow saline aquifers may be present in many areas along coastal California, which would dramatically increase vulnerability to SLR-driven groundwater emergence and shoaling. Improved understanding of the extent and response of California coastal aquifers to SLR will help in preparing for mitigation and adaptation.

California

Characterizing crop water use dynamics in the Central Valley of California using landsat-derived evapotranspiration

Understanding how different crops use water over time is essential for planning and managing water allocation, water rights, and agricultural production. The main objective of this paper is to characterize the spatiotemporal dynamics of crop water use in the Central Valley of California using Landsat-based annual actual evapotranspiration (ETa) from 2008 to 2018 derived from the Operational Simplified Surface Energy Balance (SSEBop) model. Crop water use for 10 crops is characterized at multiple scales. The Mann–Kendall trend analysis revealed a significant increase in area cultivated with almonds and their water use, with an annual rate of change of 16,327 ha in area and 13,488 ha-m in water use. Conversely, alfalfa showed a significant decline with 12,429 ha in area and 13,901 ha-m in water use per year during the same period. A pixel-based Mann–Kendall trend analysis showed the changing crop type and water use at the level of individual fields for all of Kern County in the Central Valley. This study demonstrates the useful application of historical Landsat ET to produce relevant water management information. Similar studies can be conducted at regional and global scales to understand and quantify the relationships between land cover change and its impact on water use.

California

A customized framework for regional classification of conifers using automated feature extraction

Pinyon and juniper expansion into sagebrush ecosystems is one of the major challenges facing land managers in the Great Basin. Effective pinyon and juniper treatment requires maps that accurately and precisely depict tree location and degree of woodland development so managers can target restoration efforts for early stages of pinyon and juniper expansion. However, available remotely sensed layers that cover a regional spatial extent lack the spatial resolution or accuracy to meet this need. Accuracy can be improved using object-based image analysis methods such as automated feature extraction, which has proven successful in accurately classifying land cover at the site-level but to date has yet to be applied to regional extents due to time and computational limitations. Using Feature Analyst™, we implement our framework with 1-m 2 reference imagery provided by National Agricultural Imagery Program to classify conifers across Nevada and northeastern California. Our resulting binary conifer map has an overall accuracy of 86%. We discuss the advantages to accuracy and precision our framework provides compared to other classification methods

Oregon, California, Nevada, Utah