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USGS2014

Guidelines for monitoring and adaptively managing restoration of Chinook salmon ( Oncorhynchus tshawytscha ) and steelhead ( O. mykiss ) on the Elwha River

As of January, 2014, the removal of the Elwha and Glines Canyon dams on the Elwha River, Washington, represents the largest dam decommissioning to date in the United States. Dam removal is the single largest step in meeting the goals of the Elwha River Ecosystem and Fisheries Restoration Act of 1992 (The Elwha Act) — full restoration of the Elwha River ecosystem and its native anadromous fisheries (Section 3(a)). However, there is uncertainty about project outcomes with regards to salmon populations, as well as what the ‘best’ management strategy is to fully restore each salmon stock. This uncertainty is due to the magnitude of the action, the large volumes of sediment expected to be released during dam removal, and the duration of the sediment impact period following dam removal. Our task is further complicated by the depleted state of the native salmonid populations remaining in the Elwha, including four federally listed species. This situation lends itself to a monitoring and adaptive management approach to resource management, which allows for flexibility in decision-making processes in the face of uncertain outcomes. The Elwha Monitoring and Adaptive Management (EMAM) guidelines presented in this document provide a framework for developing goals that define project success and for monitoring project implementation and responses, focused upon two federally listed salmon species — Puget Sound Chinook salmon (Oncorhynchus tshawytscha) and Puget Sound steelhead (O. mykiss). The framework also should serve as a guide to help managers adaptively manage fish restoration actions during and following dam removal. The document is organized into seven sections, including an introduction (Section 1), a description of the adaptive management approach (Section 2), suggested modifications to the existing restoration strategy developed in previous Elwha River restoration documents (section 3), specific descriptions of an adaptive management framework, including establishment of goals, performance indicators, and potential adaptive management responses to monitoring information (section 4), monitoring tools and methods for use in evaluating performance and project outcomes (section 5), and brief sections on data record keeping and reporting (Section 6) and an estimated budget (section 7). The purpose of the EMAM guidelines is to propose (1) refinement of existing goals established in previous documents (e.g., Ward et al. (2008), U.S. Department of the Interior, Department of Commerce, and Lower Elwha S’Klallam Tribe (1994)); (2) an adaptive management framework, (3) specific trigger values for relevant performance indicators that guide the adaptive management approach, (4) a specific monitoring strategy for evaluating outcomes of restoration activities; (5) a data management strategy, (6) information needed for adjusting goals when observations indicate conditions are different from anticipated. When taken together, our proposed adaptive management guidelines rely upon setting goals and objectives for each species of interest, which are monitored by relevant performance indicators and measurable trigger values that define success within each phase of the project. The guidelines themselves are arranged in a hierarchy for each species of interest. The levels of this hierarchy are goals, objectives, performance indicators, decision rules, triggers, and decisions (i.e., management/policy response). The monitoring and adaptive management approach provided is based on monitoring several categories of performance indicators, each containing associated ‘trigger’ values which, when met, alters restoration activities (e.g., hatchery releases and/or strategies) through four successive restoration phases. Performance indicators proposed in these EMAM guidelines are based upon Viable Salmon Population (VSP) metrics, including abundance, productivity, distribution, and diversity (McElhany et al. 2000). Trigger values for each performance indicator are developed for four different restoration phases: Preservation, Recolonization, Local Adaptation, and Viable Natural Population. These biologically-based phases each have a set of objectives that are based on resource management scenarios, including the dam removal project itself, which change largely based on the level of active management required and the degree, if any, of resource utilization. Thus, details of prescribed management actions for each phase are based upon different needs specific to that phase. The creation of biologically-based phases is one of the major differences between our proposed EMAM guidelines and previously presented plans for Elwha River Restoration Project management. Changed largely in response to the recommendations of the most recent of three Hatchery Scientific Review Group project reviews (HSRG 2012), the goal-oriented phases replaced the previous system of temporal changes centered around the decommissioning of the dams (i.e., before, during, and after dam removal). By focusing on outcomes associated with rebuilding salmon populations instead of an engineering schedule, the guidelines are more amenable to an adaptive management framework and the ability for management actions to influence outcomes, particularly in the periods during and following dam removal. Trigger values for each performance indicator were generally developed using existing data from the Elwha River watershed, the Puget Sound region, or other Pacific Northwest rivers (i.e., elsewhere in Washington State, Oregon, British Columbia) modified to be relevant for Chinook salmon and steelhead recovery in the Elwha River. By meeting all of the trigger value levels for all performance indicators for a set amount of time within a management phase, the guidelines call for moving to the next phase. This next phase has a new set of trigger values for the same performance indicators. For example, upon moving from the Preservation phase to the Recolonization phase, the trigger value for intrinsic potential increases. Intrinsic potential is a pre-defined estimate of the total extent of available habitat within a watershed for adult and juvenile fish, specific to the target species and is therefore a performance indicator of spatial distribution. By the final Viable Natural Population phase, the entire intrinsic potential of the watershed is being occupied by the species of interest. For those cases when a performance indicator is not exceeding the target value for a particular phase after a certain time period, the trigger values provided in this document, as well as a series of exogenous variables, are explored that may help explain why the performance indicator is not being met. These exogenous variables include variables that are not part of the suite of performance indicators, such as hatchery production, harvest, habitat, and ecosystem indicators. In these cases where the program is stuck in a particular recovery phase, the situation could be caused by the selection of inappropriate trigger values or unforeseen environmental conditions. If the former, adaptive management would call for existing monitoring data to be used for modifying trigger values to an appropriate level. If one of the exogenous variables is found to be preventing the program moving to the next phase, then appropriate changes to management would be advised. For each performance indicator and many of the exogenous variables, a set of monitoring tools were proposed. Data standards were also proposed for data generated by each monitoring tool. Data management, record keeping, and reporting of monitoring and adaptive management activities and results are also outlined. Management of data from the focused monitoring program and documenting the outcomes of trigger value evaluations and associated decisions from the adaptive management approach are key components of the EMAM guidelines. Without a clear history of data generated and adaptive management decisions taken by managers, the ability to learn through adaptive management breaks down. In addition to the long time period involved, another complication is the fact that the data will likely be collected by different federal and state agencies, tribal staff, and others. Having a system of reporting developed should help alleviate potential problems. The restoration of the migration route to spawning and rearing habitats upstream of the former Glines Canyon Dam represents a great opportunity for salmon on the Olympic Peninsula. By removing two aging structures, it will be possible for all 5 species of salmon and steelhead to return to wild stretches of the Elwha River and major floodplain habitat characterized by multiple channels, as well as significant portions of numerous tributaries. Measuring the progress of restoration, from the perspective of both salmon populations and the ecosystem upon which they depend, is a great test for a collaborative team of scientists. The normally challenging conditions of working in a steep gradient, high velocity wilderness river are exacerbated by the release of millions of cubic yards of sediment that had accumulated in the reservoirs. After the first two years of the dam decommissioning process, this release has changed the ecology of the river, estuary, and nearshore habitats downstream of the dams. Our goal in developing the guidelines described is to provide a roadmap for tracking what hopefully will become a successful outcome. If successfully implemented, this information should prove useful as others begin planning for the removal, alteration, or reconstruction of dams throughout North America and elsewhere, an inevitable outcome of an aging dam infrastructure.

Washington↗
USGS1998

Ground-water age, flow, and quality near a landfill, and changes in ground-water conditions from 1976 to 1996 in the Swinomish Indian Reservation, northwestern Washington

This report describes the results of two related studies: a study of ground-water age, flow, and quality near a landfill in the south-central part of the Swinomish Indian Reservation; and a study of changes in ground-water conditions for the entire reservation from 1976 to 1996. The Swinomish Indian Reservation is a 17-square-mile part of Fidalgo Island in northwestern Washington. The groundwater flow system in the reservation is probably independent of other flow systems in the area because it is almost completely surrounded by salt water. There has been increasing stress on the ground-water resources of the reservation because the population has almost tripled during the past 20 years, and 65 percent of the population obtain their domestic water supply from the local ground-water system. The Swinomish Tribe is concerned that increased pumping of ground water might have caused decreased ground-water discharge into streams, declines in ground-water levels, and seawater intrusion into the ground-water system. There is also concern that leachate from an inactive landfill containing mostly household and wood-processing wastes may be contaminating the ground water. The study area is underlain by unconsolidated glacial and interglacial deposits of Quaternary age that range from about 300 to 900 feet thick. Five hydrogeologic units have been defined in the unconsolidated deposits. From top to bottom, the hydrogeologic units are a till confining bed, an outwash aquifer, a clay confining bed, a sea-level aquifer, and an undifferentiated unit. The ground-water flow system of the reservation is similar to other island-type flow systems. Water enters the system through the water table as infiltration and percolation of precipitation (recharge), then the water flows downward and radially outward from the center of the island. At the outside edges of the system, ground water flows upward to discharge into the surrounding saltwater bodies. Average annual recharge is estimated to be about 3 inches, or 12 percent of the average annual precipitation. Ground water in the outwash aquifer near the landfill is estimated to be between 15 and 43 years old. Some deeper ground waters and ground water near the discharge areas close to the shoreline are older than 43 years. Analysis of water-quality data collected for this study and review of existing data indicate that material in the landfill has had no appreciable impact on the current quality of ground water outside of the landfill. The water quality of samples from seven wells near to and downgradient from the landfill appears to be similar to the ground-water quality throughout the entire study area. The high iron and manganese concentrations found in most of the samples from wells near the landfill are probably within the range of natural concentrations for the study area. Ground-water pumping during the past 20 years has not caused any large changes in ground-water discharge to streams, ground-water levels, or seawater intrusion into the ground-water system. Ground-water discharge into Snee-oosh Creek and Munks Creek had similar magnitudes in the summers of 1976 and 1996; flows in both creeks during those summers ranged from 0.07 t 0.15 cubic feet per second. Ground-water levels changed minimally between 1976 and 1996. The average water-level change for 20 wells with more than 10 years between measurements was -0.7 feet and the two largest waterlevel declines were 6 and 9 feet. No appreciable seawater intrusion was found in the ground water in 1996, and there was no significant increase in the extent of seawater intrusion from 1976 to 1996. Median chloride concentrations of water samples collected from wells were 22 milligrams per liter in 1976 and 18 milligrams per liter in 1996.

Washington↗
USGS2023

Open water dreissenid mussel control projects: Lessons learned from a retrospective analysis

Dreissenid mussels are one of the most problematic aquatic invasive species (AIS) in North America, causing substantial ecological and economic effects. To date, dreissenid mussel control efforts in open water have included physical, biological, and chemical methods. The feasibility of successful dreissenid mussel management or eradication in lakes is relatively undocumented in the freshwater management literature. This review presents information on 33 open water dreissenid mussel control projects in 23 North America lakes. We reviewed data from past dreissenid mussel control projects and identified patterns and knowledge gaps to help inform adaptive management strategies. The three key lessons learned include (1) pre- and post-treatment survey methods that are designed to meet management objectives are beneficial, e.g., by sampling for all life stages and taking into account that no survey method is completely comprehensive; (2) defining the treatment area—particularly ensuring it is sufficiently large to capture all life stages present—is critical to meeting management objectives; and (3) control projects provide an opportunity to collect water chemistry, effects on non-target organisms, and other efficacy-related data that can inform safe and effective adaptive management.

Scientific Reports↗
USGS2022

Integrating climate-informed planning into State Wildlife Action Plans in the north central United States

State fish and wildlife agencies are required to submit a State Wildlife Action Plan (SWAP) every 10 years to be eligible for grants through the State Wildlife Grant Program. With the next round of revisions due in 2025, the U.S. Geological Survey North Central Climate Adaptation Science Center is evaluating how to best support states with further integrating climate-informed planning in their SWAPs. Here, we summarize how states in the North Central region, which includes Colorado, Kansas, Montana, Nebraska, North Dakota, South Dakota, and Wyoming, addressed adaptation planning in their 2015 SWAPs. We review climate adaptation considerations in required SWAP elements one through five, including species, habitats, threats, conservation actions, and conservation monitoring, respectively. We also include a list of potential strategies that the North Central Climate Adaptation Science Center could use to support states in the North Central region with further advancing the integration of climate informed planning in ongoing and future SWAP revisions. These strategies were primarily identified during meetings in 2021 with six of seven state fish and wildlife agencies in the North Central region where we discussed their priority needs relating to climate-informed planning. Our hope is that these strategies will enhance existing efforts in the region to advance the integration of climate change in conservation planning.

Colorado, Kansas, Montana, Nebraska, North Dakota,↗
USGS2009

Emissions from coal fires and their impact on the environment

Self-ignited, naturally occurring coal fires and fires resulting from human activities persist for decades in underground coal mines, coal waste piles, and unmined coal beds. These uncontrolled coal fires occur in all coal-bearing parts of the world (Stracher, 2007) and pose multiple threats to the global environment because they emit greenhouse gases - carbon dioxide (CO 2 ), and methane (CH 4 ) - as well as mercury (Hg), carbon monoxide (CO), and other toxic substances (fig. 1). The contribution of coal fires to the global pool of atmospheric CO 2 is little known but potentially significant. For China, the world's largest coal producer, it is estimated that anywhere between 10 million and 200 million metric tons (Mt) of coal reserves (about 0.5 to 10 percent of production) is consumed annually by coal fires or made inaccessible owing to fires that hinder mining operations (Rosema and others, 1999; Voigt and others, 2004). At this proportion of production, coal amounts lost to coal fires worldwide would be two to three times that for China. Assuming this coal has mercury concentrations similar to those in U.S. coals, a preliminary estimate of annual Hg emissions from coal fires worldwide is comparable in magnitude to the 48 tons of annual Hg emissions from all U.S. coal-fired power-generating stations combined (U.S. Environmental Protection Agency, 2002). In the United States, the combined cost of coal-fire remediation projects, completed, budgeted, or projected by the U.S. Department of the Interior's Office of Surface Mining Reclamation and Enforcement (OSM), exceeds $1 billion, with about 90% of that in two States - Pennsylvania and West Virginia (Office of Surface Mining Enforcement and Reclamation, 2008; fig. 2). Altogether, 15 States have combined cumulative OSM coal-fire project costs exceeding $1 million, with the greatest overall expense occurring in States where underground coal fires are predominant over surface fires, reflecting the greater cost of extinguishing underground fires (fig. 2) (see 'Controlling Coal Fires'). In this fact sheet we review how coal fires occur, how they can be detected by airborne and remote surveys, and, most importantly, the impact coal-fire emissions may have on the environment and human health. In addition, we describe recent efforts by the U.S. Geological Survey (USGS) and collaborators to measure fluxes of CO 2 , CO, CH 4 , and Hg, using groundbased portable detectors, and combining these approaches with airborne thermal imaging and CO 2 measurements. The goal of this research is to develop approaches that can be extrapolated to large fires and to extrapolate results for individual fires in order to estimate the contribution of coal fires as a category of global emissions.

Fact Sheet↗
USGS1993

Proceedings of the symposium on restoration planning for the rivers of Mississippi River ecosystem

This volume presents over 25 papers containing the proceedings of a symposium held at the 122nd annual meeting of the American Fisheries Society in September 1992. The symposium was organised to review the status of fish and wildlife resources and restoration planning for the Mississippi river ecosystem. The objectives of the symposia were as follows: to present existing information of the biota and values associated with riverine resources throughout the basin; to identify existing or planned actions that might be useful for fisheries management in rivers within the basin and to identify minimal requirements for the restoration of important fish stocks, other aquatic resources and entire ecosystems. Papers included in this issue cover the following topics: thee impacts of altered hydrologic sediment and organic matter cycles; the availability of woody debris in the river cross-section, loss of floodplain and side-arm connection, and changing water quality.

Mississippi River Basin↗
USGS2007

Review of the geology and paleontology of the Ellsworth Mountains, Antarctica

The geology of the Ellsworth Mountains has become known in detail only within the past 40-45 years, and the wealth of paleontologic information within the past 25 years. The mountains are an anomaly, structurally speaking, occurring at right angles to the Transantarctic Mountains, implying a crustal plate rotation to reach the present location. Paleontologic affinities with other parts of Gondwanaland are evident, with nearly 150 fossil species ranging in age from Early Cambrian to Permian, with the majority from the Heritage Range. Trilobites and mollusks comprise most of the fauna discovered and identified, including many new genera and species. A Glossopteris flora of Permian age provides a comparison with other Gondwana floras of similar age. The quartzitic rocks that form much of the Sentinel Range have been sculpted by glacial erosion into spectacular alpine topography, resulting in eight of the highest peaks in Antarctica.

Open-File Report↗
USGS2010

Main field and recent secular variation.

As Cain (1979) indicated might happen in the last IUGG quadrennial report, added resources were made available during the past few years and a real impulse was added to the geomagnetic work in the US by the launching of the MAGSAT Satellite. This new effort paid off in terms of new charts, additional long wavelength studies, and external source studies. As before, however, the future funding for new starts in geomagnetism does not look bright at the present time. A single MAGSAT in orbit a little more than seven months did wonders for main field (M.F.) charting, but did little or nothing for secular variation (S.V.) charting. It would take a number of repeated MAGSATS to help the S.V. picture. Meanwhile, the world magnetic observatory net and surface repeat stations remain as the main source of S.V. data. -from Author

Reviews of Geophysics and Space Physics↗
USGS2003

Modified Arrington method for calculating reserve growth; a new model for United States oil and gas fields

Reserve (or field) growth is an appreciation of total ultimate reserves through time and is observed throughout the productive lives of oil and gas fields in all petroleum provinces? but most especially in mature petroleum provinces (like many in the United States) when the rate of finding new discoveries reduces to a low level. The importance of forecasting reserve growth accurately in a mature petroleum province made it necessary to develop improved growth functions, and a critical review of the original Arrington method was undertaken. A modification of the pioneering Arrington (1960) method for estimating reserve growth suggests that, as a basis for optimum reserve growth functions, cumulative growth factor smoothing produces a better match with known volume data than does annual growth factor smoothing. Cumulative growth factor smoothing is thus the basis for the building of reserve growth functions in this study. Estimates of oil and gas growth during 1992?1996 based on the modified Arrington method are closer to the actual volumes than those based on the functions from 1995 National Assessment. The new growth functions predict an average annual reserve growth of 0.42 percent per year for oil and 0.90 percent per year for gas over a 30-year (1996?2026) period.

Bulletin↗
USGS1985

Regression modeling of ground-water flow

Nonlinear multiple regression methods are developed to model and analyze groundwater flow systems. Complete descriptions of regression methodology as applied to groundwater flow models allow scientists and engineers engaged in flow modeling to apply the methods to a wide range of problems. Organization of the text proceeds from an introduction that discusses the general topic of groundwater flow modeling, to a review of basic statistics necessary to properly apply regression techniques, and then to the main topic: exposition and use of linear and nonlinear regression to model groundwater flow. Statistical procedures are given to analyze and use the regression models. A number of exercises and answers are included to exercise the student on nearly all the methods that are presented for modeling and statistical analysis. Three computer programs implement the more complex methods. These three are a general two-dimensional, steady-state regression model for flow in an anisotropic, heterogeneous porous medium, a program to calculate a measure of model nonlinearity with respect to the regression parameters, and a program to analyze model errors in computed dependent variables such as hydraulic head. (USGS)

Open-File Report↗
USGS2002

A model project for exploring the role of sustainability science in a citizen-centered, collaborative decision-making process

The role of science in society is evolving as we enter the 21st century. The report, Science — The Endless Frontier (Bush 1990[1945]), outlined a model of national scientific research that served the country for 50 years. The contract between science and society established in that report stipulated that science is essential and that basic research meets national needs (Pielke and Byerly 1998). This stipulation and the abundant — seemingly unlimited and unquestioned — funding for research during the Cold War caused many scientists to come to believe that funding for science was an entitlement independent of societal needs. Implicit in this belief is that science alone can solve society’s problems. We now are learning that many policy issues that involve science involve diverse economic, political, social, and aesthetic values as well, and rarely, if ever, is scientific information alone the basis of public policy (e.g., see Sarewitz 1996a, 1996b; Frodeman 1997). Moreover, resources are increasingly more limited and many in society are questioning the value of public-supported science.

Human Ecology Review↗
USGS1998

Revising U.S. Geological Survey mineral-resource assessment methods

As a result of public controversy over recommendations related to the wilderness preservation system, the U.S. Geological Survey (USGS) conducted a series of reviews of its mineral-resource assessment methods. The first review panel recommended several short- and long-term modifications to improve future mineral-resource assessments (Harris and Rieber, 1993). Implementation of some of these recommendations requires the development of new tools to augment USGS assessment procedures. The second panel identified the need to improve the classification of known mineral deposits according to USGS deposit models and to improve the delineation of areas that are favorable for the occurrence of particular mineral-deposit types (Barton and others, 1995). The panels' major recommendations, however, were to develop two new tools as a first priority -- empirical rate-of-occurrence models for important mineral-deposit types (which aid in the subjective assessment of the number of undiscovered deposits in a given area) and economic cost filters.

Information Handout↗
USGS1983

Mineral surveys by the Geological Survey and the Bureau of Mines of Bureau of Land Management Wilderness Study Areas

The Federal Land Policy and Management Act of 1976 instructed the Bureau of Land Management (BLM) to review all public lands under its jurisdiction and to determine their suitability or nonsuitability for wilderness designation. As part of this process, the Geological Survey and the Bureau of Mines conduct mineral surveys of areas for which a preliminary determination of wilderness suitability has been made. The BLM has completed its wilderness inventory phase and has found that 23.2 million acres deserve further study for wilderness consideration. These 23.2 million acres of wilderness study areas include 1 million acres of natural and primitive areas (Instant Study Areas), 5.7 million acres in the California Desert Conservation Area, and 16.5 million acres in other wilderness study areas. Mineral surveys on all areas recommended for wilderness will be completed by 1990.

Circular↗
USGS1989

The hydrogeologic framework and a reconnaissance of ground-water quality in the Piedmont Province of North Carolina, with a design for future study

The U.S. Geological Survey is investigating the relation of ground- water quality and land use in the regolith and fractured rock ground-water system of the North Carolina Piedmont. The initial phase of this study provides a description of the ground-water flow system and a review of available ground-water data and formulates hypotheses that guide the design of a water-quality monitoring network for study of selected areas. In the Piedmont, the solid igneous and metamorphic bedrock grades upward into unweathered fractured rock that is covered by a transition zone of highly-fractured, partially weathered rock, clay-rich saprolite, and the soil. The fractured bedrock, transition zone, saprolite, and soil make up a complex flow system. A review of available ground-water quality data shows a lack of information about organic compounds and trace metals and changes in ground- water quality with depth. Land use, soils, and geology significantly influence ground-water quality. The hypotheses that need to be tested in the next study phase are: (1) that ground-water contamination can be related to land use, and (2) that the transition zone between bedrock and regolith serves as a primary transmitter of contaminants. Monitoring of basins containing industrial, urban, residential, and agricultural land uses in future studies will help define the relation of ground-water quality to land use. Water quality at different depths in the flow system and in streams during base flow needs to be identified.

North Carolina↗
USGS2005

Coral disease and health workshop: Coral histopathology II, July 12-14, 2005

The health and continued existence of coral reef ecosystems are threatened by an increasing array of environmental and anthropogenic impacts. Coral disease is one of the prominent causes of increased mortality among reefs globally, particularly in the Caribbean. Although over 40 different coral diseases and syndromes have been reported worldwide, only a few etiological agents have been confirmed; most pathogens remain unknown and the dynamics of disease transmission, pathogenicity and mortality are not understood. Causal relationships have been documented for only a few of the coral diseases, while new syndromes continue to emerge. Extensive field observations by coral biologists have provided substantial documentation of a plethora of new pathologies, but our understanding, however, has been limited to descriptions of gross lesions with names reflecting these observations (e.g., black band, white band, dark spot). To determine etiology, we must equip coral diseases scientists with basic biomedical knowledge and specialized training in areas such as histology, cell biology and pathology. Only through combining descriptive science with mechanistic science and employing the synthesis epizootiology provides will we be able to gain insight into causation and become equipped to handle the pending crisis. One of the critical challenges faced by coral disease researchers is to establish a framework to systematically study coral pathologies drawing from the field of diagnostic medicine and pathology and using generally accepted nomenclature. This process began in April 2004, with a workshop titled Coral Disease and Health Workshop: Developing Diagnostic Criteria co-convened by the Coral Disease and Health Consortium (CDHC), a working group organized under the auspices of the U.S. Coral Reef Task Force, and the International Registry for Coral Pathology (IRCP). The workshop was hosted by the U.S. Geological Survey, National Wildlife Health Center (NWHC) in Madison, Wisconsin and was focused on gross morphology and disease signs observed in the field. A resounding recommendation from the histopathologists participating in the workshop was the urgent need to develop diagnostic criteria that are suitable to move from gross observations to morphological diagnoses based on evaluation of microscopic anatomy. As a continuation of building the foundation and framework for coral disease diagnostics, the CDHC convened the Coral Disease and Health Workshop: Coral Histopathology II in Charleston, South Carolina, July 11-14, 2005. The workshop was hosted by the Department of Pathology and Laboratory Medicine at the Medical University of South Carolina, Charleston, SC which provided expertise, facilities and equipment in support of the workshop. All of the histological slides and related photographs used in the discussions were prepared and supplied by the IRCP. This workshop brought together 15 experts in veterinary and medical pathology and coral biology from national and international research institutes and government laboratories. The mission was to devise a standardized approach to examining microscopic anatomy and pathology of corals and a standardized nomenclature to facilitate accurate descriptions of the microscopic morphology of corals and enhance communication among specialists investigating causes of coral death. 2 The participants of this workshop deliberated for 3 days to refine the nomenclature for gross and microscopic anatomy of corals and systematically described microscopic changes associated with selected coral diseases. The findings and recommendations from the deliberations will be submitted to the research community for peer review. The standardized nomenclature and descriptions produced at this workshop will ultimately be made available to the scientific community through a variety of media including the World Wide Web. An exciting highlight of this meeting was provided by Professor Robert Ogilvie (MUSC Department of Cell Biology and Anatomy) when he introduced participants to a new digital technology that is revolutionizing histology and histopathology in the medical field. The Virtual Slide technology creates digital images of histological tissue sections by computer scanning actual slides in high definition and storing the images for retrieval and viewing. Virtual slides now allow any investigator with access to a computer and the web to view, search, annotate and comment on the same tissue sections in real time. Medical and veterinary slide libraries across the country are being converted into virtual slides to enhance biomedical education, research and diagnosis. The coral health and disease researchers at this workshop deem virtual slides as a significant way to increase capabilities in coral histology and a means for pathology consultations on coral disease cases on a global scale.

NOAA Technical Memorandum↗
USGS1986

Geologic implications of Paleozoic and Mesozoic paleontology and biostratigraphy, Blue Mountains province, Oregon and Idaho

This volume contains, besides the present review, seven papers on the biostratigraphy of pre-Tertiary rocks in the Blue Mountains province. Geologic implications of the faunal data are discussed in the context of terrane analyses. Most of the authors agree that the pre-Tertiary rocks of this province were formed in a complex island arc within a low-latitude faunal realm and subsequently moved northward and accreted to the North American continent. The use of different terrane names for parts of the Blue Mountains province by different authors may lead to some confusion. We suggest that future authors use the term "Blue Mountains island arc" for the pre-Tertiary province and, if there is a need for subdivision, that they use the terrane names proposed by Silberling and others (1984).

Idaho;Oregon;Washington↗
USGS2024

Case definitions for wildlife diseases

Welcome to the first manual of “Case Definitions for Wildlife Diseases,” a “living” electronic publication. The plan is to add and update this manual’s case definitions periodically as warranted; thus, this manual will never be completed, and readers should download the latest versions of specific chapters (that is, definitions) when available. Constructive suggestions from readers are welcome and will help guide adjustments as this project progresses. The purpose of this manual is to provide case definitions for selected diseases of importance to wildlife in Canada and the United States. Case definitions provide standard sets of criteria for classifying the degree of certainty of a particular diagnosis and help improve surveillance data quality and comparability. Better data and standardization allow for improved data sharing, which increases geographic and species surveillance coverage and permits more robust analyses. The definitions included in this manual have been developed by veterinary pathologists, epidemiologists, and wildlife biologists primarily from the U.S. Geological Survey National Wildlife Health Center (NWHC) and Canadian Wildlife Health Cooperative (CWHC). Pathologists from each organization reviewed and finalized the definitions. Each case definition has been peer reviewed by two scientific experts before publication. This manual begins with the case definition template. This generic template includes four sections: “Individual, Place, and Time Criteria for Diagnosis and Testing,” “Field Criteria for Diagnosis,” “Laboratory Criteria for Diagnosis,” and “Epidemiological Linkage Criteria for Diagnosis” and can be used to guide development of new case definitions. Information in each section is then combined to provide an overall case classification. Disease diagnoses are classified as “Confirmed,” “Presumptive,” or “Suspected;” and evidence of a pathogen or toxin is classified as “Exposed” or “Present/Detected.” Each subsequent chapter is then a case definition for a specific disease of wildlife, and infectious and non-infectious diseases are included.

Techniques and Methods↗
USGS1982

Habitat suitability index models: Black crappie

Characteristics and habitat requirements of the black crappie (Pomoxis nigromaculatus) are described in a review of Habitat Suitability Index models. This is one in a series of publications to provide information on the habitat requirements of selected fish and wildlife species. Numerous literature sources have been consulted in an effort to consolidate scientific data on species-habitat relationships. These data have subsequently been synthesized into explicit Habitat Suitability Index (HSI) models. The models are based on suitability indices indicating habitat preferences. Indices have been formulated for variables found to affect the life cycle and survival of each species. Habitat Suitability Index (HSI) models are designed to provide information for use in impact assessment and habitat management activities. The HSI technique is a corollary to the U.S. Fish and Wildlife Service's Habitat Evaluation Procedures.

FWS/OBS↗

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