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USGS2014

Exposure pathways and biological receptors: baseline data for the canyon uranium mine, Coconino County, Arizona

Recent restrictions on uranium mining within the Grand Canyon watershed have drawn attention to scientific data gaps in evaluating the possible effects of ore extraction to human populations as well as wildlife communities in the area. Tissue contaminant concentrations, one of the most basic data requirements to determine exposure, are not available for biota from any historical or active uranium mines in the region. The Canyon Uranium Mine is under development, providing a unique opportunity to characterize concentrations of uranium and other trace elements, as well as radiation levels in biota, found in the vicinity of the mine before ore extraction begins. Our study objectives were to identify contaminants of potential concern and critical contaminant exposure pathways for ecological receptors; conduct biological surveys to understand the local food web and refine the list of target species (ecological receptors) for contaminant analysis; and collect target species for contaminant analysis prior to the initiation of active mining. Contaminants of potential concern were identified as arsenic, cadmium, chromium, copper, lead, mercury, nickel, selenium, thallium, uranium, and zinc for chemical toxicity and uranium and associated radionuclides for radiation. The conceptual exposure model identified ingestion, inhalation, absorption, and dietary transfer (bioaccumulation or bioconcentration) as critical contaminant exposure pathways. The biological survey of plants, invertebrates, amphibians, reptiles, birds, and small mammals is the first to document and provide ecological information on .200 species in and around the mine site; this study also provides critical baseline information about the local food web. Most of the species documented at the mine are common to ponderosa pine Pinus ponderosa and pinyon–juniper Pinus–Juniperus spp. forests in northern Arizona and are not considered to have special conservation status by state or federal agencies; exceptions are the locally endemic Tusayan flameflower Phemeranthus validulus, the long-legged bat Myotis volans, and the Arizona bat Myotis occultus. The most common vertebrate species identified at the mine site included the Mexican spadefoot toad Spea multiplicata, plateau fence lizard Sceloporus tristichus, violetgreen swallow Tachycineta thalassina, pygmy nuthatch Sitta pygmaea, purple martin Progne subis, western bluebird Sialia mexicana, deermouse Peromyscus maniculatus, valley pocket gopher Thomomys bottae, cliff chipmunk Tamias dorsalis, black-tailed jackrabbit Lepus californicus, mule deer Odocoileus hemionus, and elk Cervus canadensis. A limited number of the most common species were collected for contaminant analysis to establish baseline contaminant and radiological concentrations prior to ore extraction. These empirical baseline data will help validate contaminant exposure pathways and potential threats from contaminant exposures to ecological receptors. Resource managers will also be able to use these data to determine the extent to which local species are exposed to chemical and radiation contamination once the mine is operational and producing ore. More broadly, these data could inform resource management decisions on mitigating chemical and radiation exposure of biota at high-grade uranium breccia pipes throughout the Grand Canyon watershed.

Arizona↗

USGS2011

Setting limits: Using air pollution thresholds to protect and restore U.S. ecosystems

More than four decades of research provide unequivocal evidence that sulfur, nitrogen, and mercury pollution have altered, and will continue to alter, our nation's lands and waters. The emission and deposition of air pollutants harm native plants and animals, degrade water quality, affect forest productivity, and are damaging to human health. Many air quality policies limit emissions at the source but these control measures do not always consider ecosystem impacts. Air pollution thresholds at which ecological effects are observed, such as critical loads, are effective tools for assessing the impacts of air pollution on essential ecosystem services and for informing public policy. U.S. ecosystems can be more effectively protected and restored by using a combination of emissions-based approaches and science-based thresholds of ecosystem damage. Based on the results of a comprehensive review of air pollution thresholds, we conclude: ??? Ecosystem services such as air and water purification, decomposition and detoxification of waste materials, climate regulation, regeneration of soil fertility, production and biodiversity maintenance, as well as crop, timber and fish supplies are impacted by deposition of nitrogen, sulfur, mercury and other pollutants. The consequences of these changes may be difficult or impossible to reverse as impacts cascade throughout affected ecosystems. ??? The effects of too much nitrogen are common across the U.S. and include altered plant and lichen communities, enhanced growth of invasive species, eutrophication and acidification of lands and waters, and habitat deterioration for native species, including endangered species. ??? Lake, stream and soil acidification is widespread across the eastern United States. Up to 65% of lakes within sensitive areas receive acid deposition that exceeds critical loads. ??? Mercury contamination adversely affects fish in many inland and coastal waters. Fish consumption advisories for mercury exist in all 50 states and on many tribal lands. High concentrations of mercury in wildlife are also widespread and have multiple adverse effects. ??? Air quality programs, such as those stemming from the 1990 Clean Air Act Amendments, have helped decrease air pollution even as population and energy demand have increased. Yet, they do not adequately protect ecosystems from long-term damage. Moreover they do not address ammonia emissions. ??? A stronger ecosystem basis for air pollutant policies could be established through adoption of science-based thresholds. Existing monitoring programs track vital information needed to measure the response to policies, and could be expanded to include appropriate chemical and biological indicators for terrestrial and aquatic ecosystems and establishment of a national ecosystem monitoring network for mercury. The development and use of air pollution thresholds for ecosystem protection and management is increasing in the United States, yet threshold approaches remain underutilized. Ecological thresholds for air pollution, such as critical loads for nitrogen and sulfur deposition, are not currently included in the formal regulatory process for emissions controls in the United States, although they are now considered in local management decisions by the National Park Service and U.S. Forest Service. Ecological thresholds offer a scientifically sound approach to protecting and restoring U.S. ecosystems and an important tool for natural resource management and policy. ?? The Ecological Society of America.

Issues in Ecology↗

USGS2021

Techniques to improve ecological interpretability of black box machine learning models

Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with a categorical response variable. They also tend to be robust against outliers. However, their black-box nature makes it difficult to interpret these models. We introduce several recently developed statistical tools to the environmental research community in order to advance interpretation of these black-box models. To analyze the properties of the tools, we applied gradient boosted trees to investigate biological health of streams within the contiguous USA, as measured by a benthic macroinvertebrate biotic index. Based on these data and a simulation study, we demonstrate the advantages and limitations of partial dependence plots (PDP), individual conditional expectation (ICE) curves and accumulated local effects (ALE) in their ability to identify covariate–response relationships. Additionally, interaction effects were quantified according to interaction strength (IAS) and Friedman’s H 2 "> H 2 statistic. Interpretable machine learning techniques are useful tools to open the black-box of gradient boosted trees in the environmental sciences. This finding is supported by our case study on the effect of impervious surface on the benthic condition, which agrees with previous results in the literature. Overall, the most important variables were ecoregion, bed stability, watershed area, riparian vegetation and catchment slope. These variables were also present in most identified interaction effects. In conclusion, graphical tools (PDP, ICE, ALE) enable visualization and easier interpretation of GBT but should be supported by analytical statistical measures. Future methodological research is needed to investigate the properties of interaction tests. Supplementary materials accompanying this paper appear on-line.

Journal of Agricultural, Biological, and Environme↗

USGS2026

Leopard occupancy and habitat use in the multi-use Chitwan-Annapurna Landscape, Nepal

We estimated leopard ( Panthera pardus fusca ) occupancy in a multi-use region within Nepal’s Chitwan-Annapurna Landscape to evaluate leopard habitat use and inform conservation planning in areas where most of the species’ habitat occurs outside protected areas. In 2021, sign surveys were conducted along 1277 km of transects distributed among 145 grid cells of 7×7 km within a 7105 km² study area, where 226 leopard signs (pugmarks and scats) were documented. We used an occupancy modeling framework to evaluate the influence of environmental and anthropogenic factors on leopard habitat use. We found that leopard occupancy (ψ = 0.73 ± 0.17 CI) was strongly and positively associated with areas used by wild prey such as red muntjac ( Muntiacus muntjak ), rhesus macaques ( Macaca mulatta ), chital ( Axis axis ), and wild boars ( Sus scrofa ). Our results provide evidence that large carnivores like leopards can persist in human-dominated landscapes when native prey remains abundant, underscoring the need for community-based conservation that sustains both prey and predator populations beyond protected areas. By estimating leopard occupancy outside of protected areas, the research establishes a baseline for developing management strategies to ensure the continued existence of leopards in Nepal's multi-use landscapes.

Chitwan-Annapurna Landscape↗

USGS2019

Effects of a changing climate on the hydrological cycle in cold desert ecosystems of the Great Basin and Columbia Plateau

Climate change is already resulting in changes in cold desert ecosystems, lending urgency to the need to understand climate change effects and develop effective adaptation strategies. In this review, we synthesize information on changes in climate and hydrologic processes during the last century for the Great Basin and Columbia Plateau, and discuss future projections for the 21st century. We develop mid-century projections of temperature and climate for the Great Basin and Columbia Plateau at timescales relevant to managers (2020 -2050), and discuss concepts and strategies for adapting to the projected changes. For the instrumented record in the Great Basin and Columbia Plateau (1985-2011), a temperature increase of 0.7°C to 1.4°C has been documented, but changes in precipitation have been relatively minor with no clear trends. Climate projections for 2020 to 2050 indicate that temperatures will continue to increase, especially in winter and during the night. Precipitation is more difficult to project and estimates range from an 11% decrease to 25% increase depending on location. Recent records indicate that the Great Basin and Columbia Plateau are becoming more arid, a trend that is projected to continue. Droughts are likely to become more frequent and last longer, invasive annual grasses are likely to continue to expand, and the duration and severity of wildfire seasons are likely to increase. Climate projections can help in developing adaptive management strategies for actual or expected changes in climate. Strategies include reducing the risks of nonnative invasive plant spread and wildfires that result in undesirable transitions, planning for drought, and where necessary, facilitating the transition of populations, communities and ecosystems to new climatic conditions. A proactive approach to planning for and adapting to climate change is needed and publicly available internet based resources on climate data and planning strategies are available to help meet that need.

California, Idaho, Nevada, Oregon, Utah, Washingto↗

USGS2023

Leaf litter decomposition and detrital communities following the removal of two large dams on the Elwha River (Washington, USA)

Large-scale dam removals provide opportunities to restore river function in the long-term and are massive disturbances to riverine ecosystems in the short-term. The removal of two dams on the Elwha River (WA, USA) between 2011 and 2014 was the largest dam removal project to be completed by that time and has since resulted in major changes to channel dynamics, river substrates, in-stream communities, and the size and shape of the river delta. To assess ecosystem function across the restored Elwha watershed, we compared leaf litter decomposition at twenty sites: 1) four tributary sites not influenced by restoration activities; 2) four river sites downstream of the upper dam (Glines Canyon Dam); 3) four river sites within the footprint of the former Aldwell Reservoir upstream of the lower dam (Elwha Dam); 4) four river sites downstream of the lower dam; and 5) four lentic sites in the newly developing Elwha delta. Three major findings emerged: 1) decomposition rates differed among sections of the Elwha watershed, with slowest decomposition rates at the delta sites and fastest decomposition rates just downstream of the upper dam; 2) aquatic macroinvertebrate communities establishing in leaf litterbags differed significantly among sections of the Elwha watershed; and 3) aquatic fungal communities growing on leaf litter differed significantly among sections. Aquatic macroinvertebrate and fungal diversity were sensitive to differences in canopy cover, water chemistry, and river bottom sediments across sites, with a stronger relationship to elevation for aquatic macroinvertebrates. As the Elwha River undergoes recovery following the massive sediment flows associated with dam removal, we expect to see changes in leaf litter processing dynamics and shifts in litter-dependent decomposer communities (both fungal and invertebrate) involved in this key ecosystem process.

Washington↗

USGS2018

Vegetation responses to sagebrush-reduction treatments measured by satellites

Time series of vegetative indices derived from satellite imagery constitute tools to measure ecological effects of natural and management-induced disturbances to ecosystems. Over the past century, sagebrush-reduction treatments have been applied widely throughout western North America to increase herbaceous vegetation for livestock and wildlife. We used indices from satellite imagery to 1) quantify effects of prescribed-fire, herbicide, and mechanical treatments on vegetative cover, productivity, and phenology, and 2) describe how vegetation changed over time following these treatments. We hypothesized that treatments would increase herbaceous cover and accordingly shift phenologies towards those typical of grass-dominated systems. We expected prescribed burns would lead to the greatest and most-prolonged effects on vegetative cover and phenology, followed by herbicide and mechanical treatments. Treatments appeared to increase herbaceous cover and productivity, which coincided with signs of earlier senescence − signals expected of grass-dominated systems, relative to sagebrush-dominated systems. Spatial heterogeneity for most phenometrics was lower in treated areas relative to controls, which suggested treatment-induced homogenization of vegetative communities. Phenometrics that explain spring migrations of ungulates mostly were unaffected by sagebrush treatments. Fire had the strongest effect on vegetative cover, and yielded the least evidence for sagebrush recovery. Overall, treatment effects were small relative to those reported from field-based studies for reasons most likely related to sagebrush recovery, treatment specification, and untreated patches within mosaicked treatment applications. Treatment effects were also small relative to inter-annual variation in phenology and productivity that was explained by temperature, snowpack, and growing-season precipitation. Our results indicated that cumulative NDVI, late-season phenometrics, and spatial heterogeneity of several phenometrics may serve as useful indicators of vegetative change in sagebrush ecosystems.

Wyoming↗

USGS2022

Analysis of provisioning ecosystem services and perceptions of climate change for indigenous communities in the Western Himalayan Gurez Valley, Pakistan

Climate change is a significant threat to people living in mountainous regions. It is essential to understand how montane communities currently depend especially on the provisioning ecosystem services (ES) and the ways in which climate change will impact these services, so that people can develop relevant adaptation strategies. The ES in the Gurez Valley, in the Western Himalayas of Pakistan, provide a unique opportunity to explore these questions. This understudied area is increasingly exposed not only to climate change but also to the overexploitation of resources. Hence, this study aimed to (a) identify and value provisioning ES in the region; (b) delineate indigenous communities’ reliance on ES based on valuation; and (c) measure the perceptions of indigenous communities of the impact of climate change on the ES in Gurez Valley. Semi-structured interviews and focus group discussions were used to classify the provisioning ES by using the ‘Common International Classification on Ecosystem Services’ (CICES) table and applying the ‘Total Economic Valuation (TEV)’ Framework. Results indicate that the indigenous communities are highly dependent on ES, worth 6730 ± 520 USD/Household (HH)/yr, and perceive climate change as a looming threat to water, crops, and rearing livestock ESS in the Gurez Valley. The total economic value of the provisioning ES is 3.1 times higher than a household’s average income. Medicinal plant collection is a significant source of revenue in the Valley for some households, i.e., worth 766 ± 134.8 USD/HH/yr. The benefits of the sustainable use of ES and of climate change adaptation and mitigation, are culturally, economically, and ecologically substantial for the Western Himalayans.

Gurez Valley, Himalaya↗

USGS2025

Beak deformities in Buteo jamaicensis (Red-tailed Hawk) signal possible emergence of avian keratin disorder among raptors

Beginning in the late 1990s, an unusual cluster of beak deformities was observed among Buteo jamaicensis (Red-tailed Hawk) in the Pacific coastal region of North America. However, information was not available to determine the scope of this problem nor to assess a potential link between beak deformities in hawks and avian keratin disorder (AKD), an emerging disease primarily among passerines that causes overgrowth of the keratinized layer of the beak. To help address these knowledge gaps, we compiled capture records, citizen science reports, and other available data from across North America. As part of a long-term raptor monitoring program in Washington, we detected anomalously high rates of beak deformities in 29% and other keratin abnormalities in an additional 19% of B. jamaicensis between 2014 and 2021. We also identified more than 100 other AKD-like cases in B. jamaicensis , largely clustered in the Pacific coastal region, with most reports from 2000 to present. Pathologic examination of affected hawks revealed gross and microscopic features consistent with AKD in passerines, while shared epidemiological patterns, including timing of emergence, provided further evidence that this disease may impact an ecologically diverse suite of species. We detected poecivirus, a novel avian virus implicated as a likely cause of AKD in Poecile atricapillus (Black-capped Chickadee), in 1 out of 10 swabs collected from live B. jamaicensis , with gross beak deformities, suggesting the possibility of a shared viral etiology across species. However, additional work would be needed to determine the underlying cause of beak deformities in and their potential impacts on B. jamaicensis . By documenting this cluster of beak deformities, we hope to raise awareness among the ornithological community, including raptor researchers, to better track current and future outbreaks of beak deformities and related conditions.

Ornithology↗

USGS2003

Phytoplankton fuels Delta food web

Populations of certain fishes and invertebrates in the Sacramento-San Joaquin Delta have declined in abundance in recent decades and there is evidence that food supply is partly responsible. While many sources of organic matter in the Delta could be supporting fish populations indirectly through the food web (including aquatic vegetation and decaying organic matter from agricultural drainage), a careful accounting shows that phytoplankton is the dominant food source. Phytoplankton, communities of microscopic free-floating algae, are the most important food source on a Delta-wide scale when both food quantity and quality are taken into account. These microscopic algae have declined since the late 1960s. Fertilizer and pesticide runoff do not appear to be playing a direct role in long-term phytoplankton changes; rather, species invasions, increasing water transparency and fluctuations in water transport are responsible. Although the potential toxicity of herbicides and pesticides to plank- ton in the Delta is well documented, the ecological significance remains speculative. Nutrient inputs from agricultural runoff at current levels, in combination with increasing transparency, could result in harmful algal blooms.

California↗

USGS2025

SiMPL wildlife magnets: A camera trap tool for detecting all creatures great and small

We created the SiMPL wildlife magnet—a baited camera trap design that allows passive monitoring of wildlife, particularly small- to medium-sized mammals. The SiMPL wildlife magnet is inexpensive and easy to construct. To evaluate its effectiveness, we conducted a two-year case study using 9 camera stations along an elevation gradient in the White Mountains of the northeastern United States. We examined how the detection probability of mammal species changed with the inclusion of a SiMPL wildlife magnet using data from pre-and post-establishment. We found a significant increase in community-level detection probability with the use of SiMPL wildlife magnets and for individual species, including red squirrels ( Tamiasciurus hudsonicus ), American marten ( Martes americana ), and fisher ( Pekania pennanti ). Moreover, we were able to capture more species with SiMPL wildlife magnets than without, including flying squirrels ( Glaucomys spp.), various rodents ( Cricetidae spp.), black bears ( Ursus americanus ), moose ( Alces alces ), owls, and other birds. The SiMPL wildlife magnet is an effective, low-cost method for surveying wildlife communities, especially rodents and mesocarnivores. It addresses the limited field of view presented by other techniques for capturing small mammals on camera traps and enables efficient collection of phenology data, including vegetation and snowpack. This tool has several applications, including monitoring species' responses to management practices and global change.

Ecology and Evolution↗

USGS2022

Accessibility of environmental data for sharing: The role of UX in large cyberinfrastructure projects

Incorporating user experience (UX) testing when creating research cyberinfrastructure is often overlooked, but if left too late, the cost of retrofitting is considerable, and the very clients the cyberinfrastructure was built to serve may be lost. Successfully integrating UX testing into the product development cycle can be difficult but rewarding. This paper describes how UX evaluations were incorporated over ten years of operation of DataONE ( www.dataone.org ), a multi-sector science research cyberinfrastructure project created to support the discovery, access, and sustainability of data about life on Earth and the environment that sustains it. The diverse stakeholders in DataONE include data creators and users such as researchers and government workers across the broad scope of the earth and environmental sciences as well as those who hold and manage data such as libraries and data repositories. Between 2009 and 2019 DataONE members designed and constructed data management tools and services to fulfill the DataONE objectives. To assist in achieving its goals, a participatory design approach was used by establishing several largely volunteer and stakeholder-representative working groups, including the Usability and Assessment Working Group. This Working Group conducted over forty UX evaluations to assess the usability of DataONE products and websites at various stages of the development process. In addition to improving the usability of DataONE products, the UX evaluations fostered community involvement by building trust and engagement with the products being developed. The DataONE UX experience yields several important lessons which will improve the success of other projects. It is our conclusion that UX testing should be a mandatory part of the design of any cyberinfrastructure project.

Ecological Informatics↗

USGS2022

Bacteria common to rhizosphere communities of Asiatic bittersweet across a post-glacial landscape

Invasive plants such as Asiatic bittersweet ( Celastrus orbiculatus Thunb.) are a significant problem for land managers as they impact plant species composition, disrupt nutrient dynamics and structure of native ecosystems, and are difficult to eradicate. As a result of the increasing abundance of Asiatic bittersweet across the eastern U.S., we have been investigating underlying factors potentially contributing to the success of this plant. Recently, ecologists have been investigating the role of plant-soil-microbe interactions contributing to plant invasion. This work has led to question: are there certain microbes (e.g., bacteria, fungi) contributing to the success of some invasive plants? We hypothesize that despite differences in geologic age of soils where Asiatic bittersweet has established in the Indiana Dunes National Park there are sufficient common factors that led to common bacterial taxa in their rhizosphere. The objectives were to determine differences and commonalities in the soil chemistry, plant community and bacterial communities of Asiatic bittersweet plants. To achieve these objectives, bittersweet plants were collected at thirteen locations in the national park from soils ranging in geologic age from 150 to over 14,500 years. Surrounding soil chemistry, plant cover and the 16S rRNA gene amplicon sequences of rhizosphere soil bacterial communities of these Asiatic bittersweet were compared. Asiatic bittersweet coverage of sampling sites ranged from 2 to 77% averaging 52 ± 2%. There were statistically significant differences ( p < 0.05) in alpha diversity (Shannon, Faith’s PD and Pielou’s evenness) and beta diversity (Bray Curtis, Jaccard, unweighted Unifrac, weighted Unifrac) among the samples when grouped by soil age or habitat. Despite these differences in the bacterial communities from different soil ages and habitats, some bacterial taxa (e.g., Bacillus, Streptomyces, Sphingomonas and Rhizobiales) previously found in other studies to be beneficial to plant growth were found in every rhizosphere community sampled. These microbes provide insight into a possible contributing factor to the success of this invasive plant at the Indiana Dunes National Park, and a strategy for future work to reduce the impact of Asiatic bittersweet establishment and offer some new strategies to manage this nuisance species.

Frontiers of Ecology and Evolution↗

USGS2011

Survey of invasive ants at Hakalau Forest National Wildlife Refuge

We conducted a survey for invasive ants at Hakalau Forest National Wildlife Refuge, Hawai‘i Island, during 2009–2010 to evaluate potential threats to native arthropod communities and food webs. The focal area of the survey was the upper portion of the Hakalau Unit of the refuge, where native forest was being restored in abandoned cattle pastures. This area, between 1575 and 1940 m elevations, contained much alien kikuyu grass (Pennisetum clandestinum), but koa (Acacia koa) trees and other native species that were planted in the past 20 years were rapidly filling in the pasture. We surveyed for ants at predetermined points along roads, fences, and corridors of planted koa. Sampling methods primarily consisted of hand searching and pitfall traps, but bait cards were used additionally in some instances. Our results indicated that a single species, Cardiocondyla kagutsuchi, was widespread across the upper portion of the refuge. Cardiocondyla kagutsuchi seemed absent, or at least rare, in areas of tall, dense grass. Due to the undulating topography of the area, however, the dense grass cover was interspersed with outcroppings of exposed, gravelly soil. Presumably due to warming by the sun, many of the outcropped habitats supported colonies of C. kagutsuchi. We did not detect ants in the old-growth forest below the abandoned pastures, presumably because microhabitat conditions under the forest canopy were unsuitable. Although ecological impacts of C. kagutsuchi have not been reported, they may be limited by the small size of the ant, the relatively small size of colonies, and the apparent preference of the ant for disturbed areas that are dominated by alien species. Notably, our survey of Keanakolu-Mana Road between the Observatory Road (John A. Burns Way) and the town of Waimea detected a population of Argentine ants (Linepithema humile) approximately 5.1 km north of the Maulua Section of the refuge. We also surveyed for ants on the Kona Forest Unit of the refuge. This small survey focused on approximately 14 km of roads located below about 1600 m elevation. We found two species, Solenopsis papuana and Nylanderia bourbonica. Solenopsis papuana was more widespread, being found along the southern, northern, and western boundaries, while N. bourbonica was detected only at 790 m elevation on the southern boundary. Of the two species, S. papuana seemed more likely to affect native arthropod communities due to its tendency to form relatively large, aggressive colonies and its ability to inhabit intact mesic and wet forests below 1100 m elevation. In contrast, the restriction of N. bourbonica to disturbed habitats indicated a reduced threat to native arthropod communities. Our results on the Kona Forest Unit corroborated those of a study conducted during 1999–2000, although the earlier study was more intensive over time and yielded small numbers of two additional species, Cardiocondyla wroughtonii and Tetramorium bicarinatum, both of which were detected below 792 m elevation along the southern boundary.

Hawaii↗

USGS2008

Living in Yellowstone's Caldera: A geochemical trophic cascade in elk

Though the geology of earth's rare geothermal environments and their associated microbial communities are intensely studied, less scientific attention has focused on their potential effects through the plant-herbivore-carnivore trophic chain. The west-central portion of Yellowstone National Park contains a 2000-km 2 volcanic caldera with 2- to 60-million-year-old, predominantly rhyolitic, rocks that produce relatively infertile soils. The caldera area contains one of the largest concentrations of active geothermal features in the world, including thousands of geysers, fumaroles , hot springs, and mud pots. In many other chapters of this book, we address the ecological impacts of this unique geology to the ecology of the large mammals that live within the caldera, primarily through the effects of geothermal heat on snow pack. In this chapter, we explore the unique geochemistry of the geothermal environments and the consequences of this geochemistry to elk and perhaps other herbivores that reside within the caldera. These studies were prompted by behavioral and demographic observations of elk during the initial years of our studies that we could not explain and, in turn, led us to formulate hypotheses about potential geochemical influences on elk ecology. Specifically, we contrast the concentrations of fluoride (F) and silica (SiO 2 ) found in the Madison headwaters area with areas on Yellowstone's northern range located approximately 50 km to the northwest, where geothermal features are rare or absent. We then trace the consequences of geochemical differences through abiotic and biotic linkages in the ecosystem.

Book↗

USGS1996

Development of a 10-year limnological study of Crater Lake, Crater Lake National Park, Oregon, USA

This paper summarizes the development of a limnological study of Crater Lake conducted between 1983 and 1992. The program was mandated by Congress in the fall of 1982 after a panel of limnologists found the lake data base (1896–1981) to be inadequate to determine if the phytoplankton community had changed and if the lake was decreasing in clarity as suggested from independent studies between 1978 and 1981. Congress authorized and directed the Secretary of the Interior to promptly instigate studies and investigations as to the status and trends of changes of water quality and to immediately implement such actions as necessary to assure the retention of the lake's natural pristine water quality. Program goals were to develop a detailed data base and an understanding of physical, chemical, and biological characteristics and processes of the lake. Ecological relationships among trophic levels and environmental conditions were stressed to evaluate the hypothesis that the lake had changed in water quality and clarity.

Journal of Lake and Reservoir Management↗

USGS2013

Vegetation inventory, mapping, and classification report, Fort Bowie National Historic Site

A vegetation mapping and characterization effort was conducted at Fort Bowie National Historic Site in 2008-10 by the Sonoran Desert Network office in collaboration with researchers from the Office of Arid lands studies, Remote Sensing Center at the University of Arizona. This vegetation mapping effort was completed under the National Park Service Vegetation Inventory program which aims to complete baseline mapping inventories at over 270 national park units. The vegetation map data was collected to provide park managers with a digital map product that met national standards of spatial and thematic accuracy, while also placing the vegetation into a regional and even national context. Work comprised of three major field phases 1) concurrent field-based classification data collection and mapping (map unit delineation), 2) development of vegetation community types at the National Vegetation Classification alliance or association level and 3) map accuracy assessment. Phase 1 was completed in late 2008 and early 2009. Community type descriptions were drafted to meet the then-current hierarchy (version 1) of the National Vegetation Classification System (NVCS) and these were applied to each of the mapped areas. This classification was developed from both plot level data and censused polygon data (map units) as this project was conducted as a concurrent mapping and classification effort. The third stage of accuracy assessment completed in the fall of 2010 consisted of a complete census of each map unit and was conducted almost entirely by park staff. Following accuracy assessment the map was amended where needed and final products were developed including this report, a digital map and full vegetation descriptions. Fort Bowie National Historic Site covers only 1000 acres yet has a relatively complex landscape, topography and geology. A total of 16 distinct communities were described and mapped at Fort Bowie NHS. These ranged from lush riparian woodlands lining the ephemeral washes dominated by Ash (Fraxinus), Walnut (Juglans) and Hackberry (Celtis) to drier upland sites typical of desert scrub and semi-desert grassland communities. These shrublands boast a diverse mixture of shrubs, succulents and perennial grasses. In many places the vegetation could be seen to echo the history of the fort site, with management of shrub encroachment apparent in the grasslands and the paucity of trees evidence of historic cutting for timber and fire wood. Seven of the 16 vegetation types were ‘accepted’ types within the NVC while the others have been described here as specific to FOBO and have proposed status within the NVC. The map was designed to facilitate ecologically-based natural resources management and research. The map is in digital format within a geodatabase structure that allows for complex relationships to be established between spatial and tabular data, and makes accessing the product easy and seamless. The GIS format allows user flexibility and will also enable updates to be made as new information becomes available (such as revised NVC codes or vegetation type names) or in the event of major disturbance events that could impact the vegetation.

Arizona↗

USGS2019

Confronting uncertainty: Contributions of the wildlife profession to the broader scientific community

Most wildlife professionals are engaged in 1 or both of 2 basic endeavors: science and management. These endeavors are a focus of many other disciplines, leading to widespread sharing of general methodologies. Wildlife professionals have appropriately borrowed and assimilated many methods developed primarily in other disciplines but have also led the development of one class of quantitative methods, those that confront and incorporate uncertainty. Uncertainty arises in counts of focal entities, for which wildlife professionals have developed effective methods to deal with the common problems of nondetection and misclassification. These methods have been borrowed by disciplines as varied as paleobiology, medicine, human epidemiology, industrial quality control, military target acquisition, remote sensing, and human census. Uncertainty also arises in the modeling of those counts, specifically the observation and ecological processes that generated them. Wildlife professionals recognized the fundamental importance of model selection and rapidly assimilated methods for selecting the most appropriate model for a given data set. These methods for dealing with uncertainty inherent to counting and modeling are critical to the conduct of science and management. Wildlife professionals have developed additional methods for incorporating uncertainty in the accumulation of knowledge and the development of optimal decisions in an environment of learning. In some cases, professionals in other disciplines are using methods developed and popularized in the wildlife profession, but there is much potential for greater use. In this essay, I describe these areas of wildlife leadership, document their assimilation by other disciplines, and emphasize the potential for more interdisciplinary use of these methods.

Journal of Wildlife Management↗

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