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USGS2011

The 1996-2009 borehole dilatometer installations, operation, and maintenance at sites in Long Valley Caldera, CA

High seismicity levels with accelerating uplift (under the resurgent dome) in Long Valley caldera in the eastern Sierra Nevada from 1989 to 1997, triggered upgrades to dilational strainmeters and other instrumentation installed in the early 1980's following a series of magnitude 6 earthquakes. This included two additional high-resolution borehole strainmeters and replacement of the failed strainmeter at Devil's Postpile. The purpose of the borehole-monitoring network is to monitor crustal deformation and other geophysical parameters associated with volcanic intrusions and earthquakes in the Long Valley Caldera. Additional instrumentation was added at these sites to improve the capability of providing continuous monitoring of the magma source under the resurgent dome. Sites were selected in regions of hard crystalline rock, where the expected signals from magmatic activity were calculated to be a maximum and the probability of an earthquake of magnitude 4 or greater is large. For the most part, the dilatometers were installed near existing arrays of surface tiltmeters, seismometers, level line, and GPS arrays. At each site, attempts are made to separate tectonic and volcanic signals from known noise sources in each instrument type. Each of these sites was planned to be a multi-parameter monitoring site, which included measurements of 3-component seismic velocity and acceleration, borehole strain, tilt, pore pressure and magnetic field. Using seismicity, geophysical knowledge, geologic and topographic maps, and geologists recommendations, lists of preliminary sites were chosen. Additional requirements were access, and telemetry constraints. When the final site choice was made, a permit was obtained from the U.S. Forest Service. Following this selection process, two new borehole sites were installed on the north and south side of the Long Valley Caldera in June of 1999. One site was located near Big Spring Campground to the east of Crestview. The second site was located at the Motocross Track (near Old Mammoth) in the South Moat. This report describes the methods used to install these strainmeters and various other types of borehole instruments at these sites together with the site at Devil's Postpile and telemeter the data obtained to the USGS base in Menlo Park, Calif.

California↗

USGS2011

CRMS vegetation analytical team framework: Methods for collection, development, and use of vegetation response variables

This document identifies the main objectives of the Coastwide Reference Monitoring System (CRMS) vegetation analytical team, which are to provide (1) collection and development methods for vegetation response variables and (2) the ways in which these response variables will be used to evaluate restoration project effectiveness. The vegetation parameters (that is, response variables) collected in CRMS and other coastal restoration projects funded under the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) are identified, and the field collection methods for these parameters are summarized. Existing knowledge on community and plant responses to changes in environmental drivers (for example, flooding and salinity) from published literature and from the CRMS and CWPPRA monitoring dataset are used to develop a suite of indices to assess wetland condition in coastal Louisiana. Two indices, the floristic quality index (FQI) and a productivity index, are described for herbaceous and forested vegetation. The FQI for herbaceous vegetation is tested with a long-term dataset from a CWPPRA marsh creation project. Example graphics for this index are provided and discussed. The other indices, an FQI for forest vegetation (that is, trees and shrubs) and productivity indices for herbaceous and forest vegetation, are proposed but not tested. New response variables may be added or current response variables removed as data become available and as our understanding of restoration success indicators develops. Once indices are fully developed, each will be used by the vegetation analytical team to assess and evaluate CRMS/CWPPRA project and program effectiveness. The vegetation analytical teams plan to summarize their results in the form of written reports and/or graphics and present these items to CRMS Federal and State sponsors, restoration project managers, landowners, and other data users for their input.

Open-File Report↗

USGS2019

Simulating land cover change impacts on groundwater recharge under selected climate projections, Maui, Hawaiʻi

This project developed an integrated land cover/hydrological modeling framework using remote sensing and geographic information systems (GIS) data, stakeholder input, climate information and projections, and empirical data to estimate future groundwater recharge on the Island of Maui, Hawaiʻi, USA. End-of-century mean annual groundwater recharge was estimated under four future land cover scenarios: Future 1 (conservation-focused), Future 2 (status-quo), Future 3 (development-focused), and Future 4 (balanced conservation and development), and two downscaled climate projections: a coupled model intercomparison project (CMIP) phase 5 (CMIP5) representative concentration pathway (RCP) 8.5 “dry climate” future and a CMIP3 A1B “wet climate” future. Results were compared to recharge estimated using the 2017 baseline land cover to understand how changing land management and climate could influence groundwater recharge. Estimated recharge increased island-wide under all future land cover and climate combinations and was dominated by specific land cover transitions. For the dry future climate, recharge for land cover Futures 1 to 4 increased by 12%, 0.7%, 0.01%, and 11% relative to 2017 land cover conditions, respectively. Corresponding increases under the wet future climate were 10%, 0.9%, 0.6%, and 9.3%. Conversion from fallow/grassland to diversified agriculture increased irrigation, and therefore recharge. Above the cloud zone (610 m), conversion from grassland to native or alien forest led to increased fog interception, which increased recharge. The greatest changes to recharge occurred in Futures 1 and 4 in areas where irrigation increased, and where forest expanded within the cloud zone. Furthermore, new future urban expansion is currently slated for coastal areas that are already water-stressed and had low recharge projections. This study demonstrated that a spatially-explicit scenario planning process and modeling framework can communicate the possible consequences and tradeoffs of land cover change under a changing climate, and the outputs from this study serve as relevant tools for landscape-level management and interventions.

Hawaii↗

USGS2008

A soil burn severity index for understanding soil-fire relations in tropical forests

Methods for evaluating the impact of fires within tropical forests are needed as fires become more frequent and human populations and demands on forests increase. Short- and long-term fire effects on soils are determined by the prefire, fire, and postfire environments. We placed these components within a fire-disturbance continuum to guide our literature synthesis and develop an integrated soil burn severity index. The soil burn severity index provides a set of indicators that reflect the range of conditions present after a fire. The index consists of seven levels, an unburned level and six other levels that describe a range of postfire soil conditions. We view this index as a tool for understanding the effects of fires on the forest floor, with the realization that as new information is gained, the index may be modified as warranted. ?? Royal Swedish Academy of Sciences 2008.

Conference Paper↗

USGS2024

Assessing mosquito populations to limit the spread of avian disease and inform the conservation of Hawaiian forest birds

The introduced mosquito-borne avian malaria, Plasmodium relictum , along with its mosquito vector, Culex quinquefasciatus , are key limiting factors for endemic Hawaiian forest birds and are, in part, responsible for past extinctions and continued population declines of extant species. In the last 10 years steep declines in forest bird populations have been documented on Kaua`i and Maui. Presently two endemic species on Kaua`i, `Akikiki ( Oreomystis bairdi ) and `Akeke`e ( Loxops caeruleirostris ) and two endemic species on Maui, Kiwikiu ( Pseudonestor xanthophrys ) and `Ākohekohe, ( Palmeria dolei ) are facing extinction. These declines have been attributed to avian malaria transmission exacerbated by climate change. While little can be done to reduce the effects of climate change on vector abundance and transmission, recent innovations in landscape-level mosquito suppression and eradication may provide new tools to control or eliminate vectors from forest bird habitat. The current management focus is on the development and implementation of a Wolbachia -based Incompatible Insect Technique (IIT) to reduce vector abundance. IIT involves using naturally occurring strains of Wolbachia , an endosymbiotic bacterium of C. quinquefasciatus and other arthropods, to facilitate reproductive incompatibility and infertility through cross matings. Through sustained releases of male mosquitoes infected with incompatible Wolbachia , wild mosquito populations can be suppressed. To meet regulatory approval for large-scale releases and achieve successful deployment and suppression, key ecological parameters (population density, dispersal, and survivorship) need to be assessed. Mark-release-recapture (MRR) techniques are commonly used to estimate these parameters outside of the Hawaiian Islands. Mark-release-recapture entails the capture of a portion of the population which is marked by a harmless method and then released back into the wild. The results of a subsequent or multiple recapture event(s) provide the proportion of marked individuals to unmarked individuals that can be mathematically analyzed to estimate populations size, survival, and dispersal. In this study, a MRR trial with wild-captured and laboratory-reared C. quinquefasciatus was conducted in a native forest on the Island of Hawai`i. The results provide some of the first estimates for (1) population abundance, (2) survivorship, and (3) movement of C. quinquefasciatus in forest bird habitat to support regulatory approvals and to advance and improve IIT mosquito control efforts in the State of Hawaii.

Hawaii↗

USGS2003

Climate warming could reduce runoff significantly in New England, USA

The relation between mean annual temperature (MAT), mean annual precipitation (MAP) and evapotranspiration (ET) for 38 forested watersheds was determined to evaluate the potential increase in ET and resulting decrease in stream runoff that could occur following climate change and lengthening of the growing season. The watersheds were all predominantly forested and were located in eastern North America, along a gradient in MAT from 3.5??C in New Brunswick, CA, to 19.8??C in northern Florida. Regression analysis for MAT versus ET indicated that along this gradient ET increased at a rate of 2.85 cm??C-1 increase in MAT (??0.96 cm??C-1, 95% confidence limits). General circulation models (GCM) using current mid-range emission scenarios project global MAT to increase by about 3??C during the 21st century. The inferred, potential, reduction in annual runoff associated with a 3??C increase in MAT for a representative small coastal basin and an inland mountainous basin in New England would be 11-13%. Percentage reductions in average daily runoff could be substantially larger during the months of lowest flows (July-September). The largest absolute reductions in runoff are likely to be during April and May with smaller reduction in the fall. This seasonal pattern of reduction in runoff is consistent with lengthening of the growing season and an increase in the ratio of rain to snow. Future increases in water use efficiency (WUE), precipitation, and cloudiness could mitigate part or all of this reduction in runoff but the full effects of changing climate on WUE remain quite uncertain as do future trends in precipitation and cloudiness.

Agricultural and Forest Meteorology↗

USGS2005

Nonlinearity and seasonal bias in an index of brushtail possum abundance

Introduced brushtail possums ( Trichosurus vulpecula ) are a widespread pest of conservation and agriculture in New Zealand, and considerable effort has been expended controlling populations to low densities. A national protocol for monitoring the abundance of possums, termed trap catch index (TCI), was adopted in 1996. The TCI requires that lines of leghold traps set at 20-m spacing are randomly located in a management area. The traps are set for 3 fine nights and checked daily, and possums are killed and traps reset. The TCI is the mean percentage of trap nights that possums were caught, corrected for sprung traps and nontarget captures, with trap line as the sampling unit. We studied 1 forest and 1 farmland area in the North Island, New Zealand, to address concerns that TCI estimates may not be readily comparable because of seasonal changes in the capture probability of possums. We located blocks of 6 trap lines at each area and randomly trapped 1 line in each block in 3 seasons (summer, winter, and spring) in 2000 and 2001. We developed a model to allow for variation in local population size and nightly capture probability, and fitted the model using the Bayesian analysis software BUGS . Capture probability declined with increasing abundance of possums, generating a nonlinear TCI. Capture probability in farmland was lower during spring relative to winter and summer, and to forest during summer. In the absence of a proven and cost-effective alternative, our results support the continued use of the TCI for monitoring the abundance of possums in New Zealand. Seasonal biases in the TCI should be minimized by conducting repeat sampling in the same season.

Journal of Wildlife Management↗

USGS2018

Lake sediment fecal and biomass burning biomarkers provide direct evidence for prehistoric human-lit fires in New Zealand

Deforestation associated with the initial settlement of New Zealand is a dramatic example of how humans can alter landscapes through fire. However, evidence linking early human presence and land-cover change is inferential in most continental sites. We employed a multi-proxy approach to reconstruct anthropogenic land use in New Zealand’s South Island over the last millennium using fecal and plant sterols as indicators of human activity and monosaccharide anhydrides, polycyclic aromatic hydrocarbons, charcoal and pollen as tracers of fire and vegetation change in lake-sediment cores. Our data provide a direct record of local human presence in Lake Kirkpatrick and Lake Diamond watersheds at the time of deforestation and a new and stronger case of human agency linked with forest clearance. The first detection of human presence matches charcoal and biomarker evidence for initial burning at c. AD 1350. Sterols decreased shortly after to values suggesting the sporadic presence of people and then rose to unprecedented levels after the European settlement. Our results confirm that initial human arrival in New Zealand was associated with brief and intense burning activities. Testing our approach in a context of well-established fire history provides a new tool for understanding cause-effect relationships in more complex continental reconstructions.

Scientific Reports↗

USGS2019

Plant richness and composition in hardwood forest understories vary along an acidic deposition and soil-chemical gradient in the northeastern United States

Aims A century of atmospheric deposition of sulfur and nitrogen has acidified soils and undermined the health and recruitment of foundational tree species in the northeastern US. However, effects of acidic deposition on the forest understory plant communities of this region are poorly documented. We investigated how forest understory plant species composition and richness varied across gradients of acidic deposition and soil acidity in the Adirondack Mountains of New York State. Methods We surveyed understory vegetation and soils in hardwood forests on 20 small watersheds and built models of community composition and richness as functions of soil chemistry, nitrogen and sulfur deposition, and other environmental variables. Results Community composition varied significantly with gradients of acidic deposition, soil acidity, and base cation availability (63% variance explained). Several species increased with soil acidity while others decreased. Understory plant richness decreased significantly with increasing soil acidity ( r = 0.60). The best multivariate regression model to predict richness ( p < 0.001, adjusted -R 2 = 0.60) reflected positive effects of pH and carbon-to-nitrogen ratio (C:N). Conclusions The relationship we found between understory plant communities and a soil-chemical gradient, suggests that soil acidification can reduce diversity and alter the composition of these communities in northern hardwood forests exposed to acidic deposition.

New York↗

USGS2012

Geologic framework, regional aquifer properties (1940s-2009), and spring, creek, and seep properties (2009-10) of the upper San Mateo Creek Basin near Mount Taylor, New Mexico

The U.S. Geological Survey, in cooperation with the U.S. Forest Service, examined the geologic framework, regional aquifer properties, and spring, creek, and seep properties of the upper San Mateo Creek Basin near Mount Taylor, which contains areas proposed for exploratory drilling and possible uranium mining on U.S. Forest Service land. The geologic structure of the region was formed from uplift of the Zuni Mountains during the Laramide Orogeny and the Neogene volcanism associated with the Mount Taylor Volcanic Field. Within this structural context, numerous aquifers are present in various Paleozoic and Mesozoic sedimentary formations and the Quaternary alluvium. The distribution of the aquifers is spatially variable because of the dip of the formations and erosion that produced the current landscape configuration where older formations have been exhumed closer to the Zuni Mountains. Many of the alluvial deposits and formations that contain groundwater likely are hydraulically connected because of the solid-matrix properties, such as substantive porosity, but shale layers such as those found in the Mancos Formation and Chinle Group likely restrict vertical flow. Existing water-level data indicate topologically downgradient flow in the Quaternary alluvium and indiscernible general flow patterns in the lower aquifers. According to previously published material and the geologic structure of the aquifers, the flow direction in the lower aquifers likely is in the opposite direction compared to the alluvium aquifer. Groundwater within the Chinle Group is known to be confined, which may allow upward migration of water into the Morrison Formation; however, confining layers within the Chinle Group likely retard upward leakage. Groundwater was sodium-bicarbonate/sulfate dominant or mixed cation-mixed anion with some calcium/bicarbonate water in the study area. The presence of the reduction/oxidation-sensitive elements iron and manganese in groundwater indicates reducing conditions at some time or in some location(s) in most aquifers. Frequent detections of zinc in the alluvium aquifer may represent anthropogenic influences such as mining. Along the mesas in the upper San Mateo Creek Basin, springs that form various creeks, including El Rito and San Mateo Creeks, discharge from the basalt-cap layer and the upper Cretaceous sedimentary layers. Streamflow in El Rito and San Mateo Creeks flows down steep gradients near the mesas sustained by groundwater discharges, and this streamflow transitions to shallow groundwater contained within the valley alluvium through infiltration where the subsequent groundwater is restricted from downward migration by the shaly Menefee Formation. This shallow groundwater reemerges at seeps where the land surface has been eroded below the groundwater level. Spring- and creek-water samples contained small amounts of dissolved solutes, and seep water contained substantially larger amounts of dissolved solutes. The pH of water within the creeks was neutral to alkaline, and all locations exhibited well-oxygenated conditions, although typically at substantially less than saturated levels. Changes in the stable-isotope ratios of water between spring and summer samples indicate differences in source-water inputs that likely pertain to seasonal recharge sources. Results of the water-isotope analysis and geochemical modeling indicate little evaporation and chemical weathering at the spring and creek sites but stronger evaporation and chemical weathering by the time the water reaches the seep locations in the center of the upper San Mateo Creek Basin.

New Mexico↗

USGS2014

Potential reduction in terrestrial salamander ranges associated with Marcellus shale development

Natural gas production from the Marcellus shale is rapidly increasing in the northeastern United States. Most of the endemic terrestrial salamander species in the region are classified as ‘globally secure’ by the IUCN, primarily because much of their ranges include state- and federally protected lands, which have been presumed to be free from habitat loss. However, the proposed and ongoing development of the Marcellus gas resources may result in significant range restrictions for these and other terrestrial forest salamanders. To begin to address the gaps in our knowledge of the direct impacts of shale gas development, we developed occurrence models for five species of terrestrial plethodontid salamanders found largely within the Marcellus shale play. We predicted future Marcellus shale development under several scenarios. Under scenarios of 10,000, 20,000, and 50,000 new gas wells, we predict 4%, 8%, and 20% forest loss, respectively, within the play. Predictions of habitat loss vary among species, but in general, Plethodon electromorphus and Plethodon wehrlei are predicted to lose the greatest proportion of forested habitat within their ranges if future Marcellus development is based on characteristics of the shale play. If development is based on current well locations, Plethodon richmondi is predicted to lose the greatest proportion of habitat. Models showed high uncertainty in species’ ranges and emphasize the need for distribution data collected by widespread and repeated, randomized surveys.

Biological Conservation↗

USGS2019

Space use, forays, and habitat selection in California Spotted Owls (Strix occidentalis occidentalis): New insights from high resolution GPS tracking

Our current understanding of the relationship between imperiled species and forest management can benefit from global positioning system (GPS) technologies. Fauna of lateseral stage forests have historically been difficult to detect and track in rugged terrain, leading to challenges in movement characterization and conservation. We investigated movement of California Spotted Owls ( Strix occidentalis occidentalis ) using automated GPS loggers affixed to 15 owls in the northern Sierra Nevada, California. We used >17,000 locations from individual owls to characterize homerange size, movement distances, and roosting and foraging habitat selection at four spatio-temporal scales (landscape, home range, foray, nightly) during the breeding season (April–August). Additionally, we assessed owl use of Protected Activity Centers (PACs), which are designated by the U.S.D.A. Forest Service to protect nesting and roosting habitat. Our results corroborated some previous findings about habitat requirements of California Spotted Owls, while also revealing new nuances in space use and habitat selection. Roosting and foraging owls selected stands with high canopy cover and large trees at multiple spatio-temporal scales, with foraging owls showing strongest selection at the largest (landscape) scale investigated. Although owls selected for PACs while foraging and roosting, PACs protected less than one quarter of foraging space use (volume of use) and fewer than half of observed roosts during the breeding season. Female owl home ranges were double the size of male home ranges, and distances travelled from the nest by females were 1.3 times greater than distances travelled by males, with non-breeding females travelling farthest and visiting up to six PACs during a single breeding season. Foraying behavior of this sort has not been documented previously in California Spotted Owls. Our findings support protection of later seral stage forest attributes for roosting and foraging California Spotted Owls. Given their selection for later seral forest attributes, strongest evidence of foraging habitat selection at the landscape scale, long distances travelled by owls and limited habitat protection afforded by PACs, habitat connectivity across the landscape is likely an important component for owl conservation, and distribution of current protected areas may be inadequate for this wide-ranging species.

California↗

USGS2007

The impact of runoff generation mechanisms on the location of critical source areas

Identifying phosphorus (P) source areas and transport pathways is a key step in decreasing P loading to natural water systems. This study compared the effects of two modeled runoff generation processes - saturation excess and infiltration excess - on total phosphorus (TP) and soluble reactive phosphorus (SRP) concentrations in 10 catchment streams of a Catskill mountain watershed in southeastern New York. The spatial distribution of runoff from forested land and agricultural land was generated for both runoff processes; results of both distributions were consistent with Soil Conservation Service-Curve Number (SCS-CN) theory. These spatial runoff distributions were then used to simulate stream concentrations of TP and SRP through a simple equation derived from an observed relation between P concentration and land use; empirical results indicate that TP and SRP concentrations increased with increasing percentage of agricultural land. Simulated TP and SRP stream concentrations predicted for the 10 catchments were strongly affected by the assumed runoff mechanism. The modeled TP and SRP concentrations produced by saturation excess distribution averaged 31 percent higher and 42 percent higher, respectively, than those produced by the infiltration excess distribution. Misrepresenting the primary runoff mechanism could not only produce erroneous concentrations, it could fail to correctly locate critical source areas for implementation of best management practices. Thus, identification of the primary runoff mechanism is critical in selection of appropriate models in the mitigation of nonpoint source pollution. Correct representation of runoff processes is also critical in the future development of biogeochemical transport models, especially those that address nutrient fluxes.

Journal of the American Water Resources Associatio↗

USGS2012

Comparison of stream invertebrate response models for bioassessment metric

We aggregated invertebrate data from various sources to assemble data for modeling in two ecoregions in Oregon and one in California. Our goal was to compare the performance of models developed using multiple linear regression (MLR) techniques with models developed using three relatively new techniques: classification and regression trees (CART), random forest (RF), and boosted regression trees (BRT). We used tolerance of taxa based on richness (RICHTOL) and ratio of observed to expected taxa (O/E) as response variables and land use/land cover as explanatory variables. Responses were generally linear; therefore, there was little improvement to the MLR models when compared to models using CART and RF. In general, the four modeling techniques (MLR, CART, RF, and BRT) consistently selected the same primary explanatory variables for each region. However, results from the BRT models showed significant improvement over the MLR models for each region; increases in R 2 from 0.09 to 0.20. The O/E metric that was derived from models specifically calibrated for Oregon consistently had lower R 2 values than RICHTOL for the two regions tested. Modeled O/E R 2 values were between 0.06 and 0.10 lower for each of the four modeling methods applied in the Willamette Valley and were between 0.19 and 0.36 points lower for the Blue Mountains. As a result, BRT models may indeed represent a good alternative to MLR for modeling species distribution relative to environmental variables.

California, Oregon↗

USGS2018

All is not lost: Herpetofaunal “extinctions” in the Fiji Islands

Invasive mammals are implicated in the decline or extinction of numerous insular vertebrate species worldwide, yet rediscoveries of supposedly extinct vertebrates occur regularly. In particular, recent records of secretive amphibian and reptile taxa in the Fiji Islands show that earlier claimed extirpations of Fijian wildlife were erroneous. We add to this growing body of evidence by documenting the Fiji barred treeskink Emoia trossula (Squamata: Scincidae) from Vanua Levu island, Fiji, where it was widely considered extirpated. Regional literature, coupled with this new record, emphasizes the conservation importance of remote forest blocks in Fiji as refugia against nonnative predatory mammals. Moreover, a clear need exists for additional survey work in Fiji to document the contemporary distribution of endemic and endangered herpetofaunal species across the archipelago.

Pacific Science↗

USGS1995

Experimental studies of deposition at a debris-flow flume

Geologists commonly infer the flow conditions and the physical properties of debris flows from the sedimentologic, stratigraphic, and morphologic characteristics of their deposits. However, such inferences commonly lack corroboration by direct observation because the capricious nature of debris flows makes systematic observation and measurement of natural events both difficult and dangerous. Furthermore, in contrast to the numerous experimental studies of water flow and related fluvial deposition, few real-time observations and measurements of sediment deposition by large-scale mass flow of debris under controlled conditions have been made. Recent experiments at the U.S. Geological Survey debris-flow flume in the H. J. Andrews Experimental Forest, Oregon (Iverson and others, 1992) are shedding new insight on sediment deposition by debris flows and on the veracity of methods commonly used to reconstruct flow character from deposit characteristics.

Fact Sheet↗

USGS2008

Impact of the newly arrived seed-predating beetle Specularius impressithorax (Coleoptera: Chrysomelidae: Bruchinae) in Hawai'i

Prior to 2001, seed predation was virtually absent in the endemic Wiliwili Erythrina sandwicensis (Fabaceae: Degener), dominant tree species of lower-elevation Hawaiian dryland forests. The African bruchine chrysomelid Specularius impressithorax (Pic) (Coleoptera: Chrysomelidae: Bruchinae) was first detected in Hawai'i in 2001 and became established on all main islands within the next two years. The mode of entry for this invasive Erythrina seed predator into Hawai'i is unknown, but likely occurred with the importation of trinket jewelry from Africa containing characteristically brightly-colored Erythrina seeds. The initial establishment of this insect likely occurred on a non-native host, the widely cultivated coral tree E. variegata. Within three years of its first record, S. impressithorax accounted for 77.4% mean seed crop loss in 12 populations of Wiliwili on six main Hawaiian islands. Specularius impressithorax, dispersed through international commerce and established via E. variegata, has become a threat to a unique Hawaiian forest type and may threaten other Erythrina, especially New World representatives.

Pacific Conservation Biology↗

USGS2017

Skin and fur bacterial diversity and community structure on American southwestern bats: effects of habitat, geography and bat traits

Microorganisms that reside on and in mammals, such as bats, have the potential to influence their host’s health and to provide defenses against invading pathogens. However, we have little understanding of the skin and fur bacterial microbiota on bats, or factors that influence the structure of these communities. The southwestern United States offers excellent sites for the study of external bat bacterial microbiota due to the diversity of bat species, the variety of abiotic and biotic factors that may govern bat bacterial microbiota communities, and the lack of the newly emergent fungal disease in bats, white-nose syndrome (WNS), in the southwest. To test these variables, we used 16S rRNA gene 454 pyrosequencing from swabs of external skin and fur surfaces from 163 bats from 13 species sampled from southeastern New Mexico to northwestern Arizona. Community similarity patterns, random forest models, and generalized linear mixed-effects models show that factors such as location (e.g., cave-caught versus surface-netted) and ecoregion are major contributors to the structure of bacterial communities on bats. Bats caught in caves had a distinct microbial community compared to those that were netted on the surface. Our results provide a first insight into the distribution of skin and fur bat bacteria in the WNS-free environment of New Mexico and Arizona. More importantly, it provides a baseline of bat external microbiota that can be explored for potential natural defenses against pathogens.

PeerJ↗