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USGS2015

Can polar bears use terrestrial foods to offset lost ice-based hunting opportunities?

Increased land use by polar bears ( Ursus maritimus ) due to climate-change-induced reduction of their sea-ice habitat illustrates the impact of climate change on species distributions and the difficulty of conserving a large, highly specialized carnivore in the face of this global threat. Some authors have suggested that terrestrial food consumption by polar bears will help them withstand sea-ice loss as they are forced to spend increasing amounts of time on land. Here, we evaluate the nutritional needs of polar bears as well as the physiological and environmental constraints that shape their use of terrestrial ecosystems. Only small numbers of polar bears have been documented consuming terrestrial foods even in modest quantities. Over much of the polar bear's range, limited terrestrial food availability supports only low densities of much smaller, resident brown bears ( Ursus arctos ), which use low-quality resources more efficiently and may compete with polar bears in these areas. Where consumption of terrestrial foods has been documented, polar bear body condition and survival rates have declined even as land use has increased. Thus far, observed consumption of terrestrial food by polar bears has been insufficient to offset lost ice-based hunting opportunities but can have ecological consequences for other species. Warming-induced loss of sea ice remains the primary threat faced by polar bears.

Frontiers in Ecology and the Environment↗

USGS2021

Broader impacts for ecologists: Biological soil crust as a model system for education

Biological soil crusts (biocrusts) are a complex community of algae, cyanobacteria, lichens, bryophytes, and assorted bacteria, fungi, archaea, and bacteriophages that colonize the soil surface. Biocrusts are particularly common in drylands and are found in arid and semiarid ecosystems worldwide. While diminutive in size, biocrusts often cover large terrestrial areas, provide numerous ecosystem benefits, enhance biodiversity, and are found in multiple configurations and assemblages across different climate and disturbance regimes. Biocrusts have been a focus of many ecologists, especially those working in semiarid and arid lands, as biocrusts are foundational community members, play fundamental roles in ecosystem processes, and offer rare opportunities to study biological interactions at small and large spatial scales. Due to these same characteristics, biocrusts have the potential to serve as an excellent teaching tool. The purpose of this paper is to demonstrate the utility of biocrust communities as a model system in science education. Functioning as portable, dynamic mini ecosystems, biocrusts can be used to teach about organisms, biodiversity, biotic interactions, abiotic controls, ecosystem processes, and even global change, and can be easy to use in nearly every classroom setup. For example, education principles, such as evolution and adaptation to stress, or structure and function (patterns and processes) can be applied by bringing biocrusts into the classroom as a teaching tool. In addition, discussing the utility of biocrusts in the classroom – including theory, hypothesis testing, experimentation, and hands-on learning – this document also provides tips and resources for developing education tools and activities geared toward impactful learning.

Frontiers in Microbiology↗

USGS2020

Forest management under megadrought: Urgent actions needed at finer-scale and higher intensity

Drought and warming increasingly are causing widespread tree die-offs and extreme wildfires. Forest managers are struggling to improve anticipatory forest management practices given more frequent, extensive, and severe wildfire and tree die-off events triggered by “hotter drought”—drought under warmer than historical conditions. Of even greater concern is the increasing probability of multi-year droughts, or “megadroughts”—persistent droughts that span years to decades, and that under a still-warming climate, will also be hotter than historical norms. Megadroughts under warmer temperatures are disconcerting because of their potential to trigger more severe forest die-off, fire cycles, pathogens, and insect outbreaks. In this Perspective, we identify potential anticipatory and/or concurrent options for non-timber forest management actions under megadrought, which by necessity are focused more at finer spatial scales such as the stand level using higher-intensity management. These management actions build on silvicultural practices focused on growth and yield (but not harvest). Current management options that can be focused at finer scales include key silvicultural practices: selective thinning; use of carefully selected forward-thinking seed mixes; site contouring; vegetation and pest management; soil erosion control; and fire management. For the extreme challenges posed by megadroughts, management will necessarily focus even more on finer-scale, higher-intensity actions for priority locations such as fostering stand refugia; assisted stand recovery via soil amendments; enhanced root development; deep soil water retention; and shallow water impoundments. Drought-induced forest die-off from megadrought likely will lead to fundamental changes in the structure, function, and composition of forest stands and the ecosystem services they provide.

Frontiers in Forests and Global Change↗

USGS2022

GSPy: A new toolbox and data standard for Geophysical Datasets

The diversity of geophysical methods and datatypes, as well as the isolated nature of various specialties (e.g., electromagnetic, seismic, potential fields) leads to a profusion of separate data file formats and documentation conventions. This can hinder cooperation and reduce the impact of datasets researchers have invested in heavily to collect and prepare. An open, portable, and well-supported community data standard could greatly improve the interoperability, transferability, and long-term archival of geophysical data. Airborne geophysical methods particularly need an open and accessible data standard, and they exemplify the complexity that is common in geophysical datasets where critical auxiliary information on the survey and system parameters are required to fully utilize and understand the data. Here, we propose a new Geophysical Standard, termed the GS convention, that leverages the well-established and widely used NetCDF file format and builds on the Climate and Forecasts (CF) metadata convention. We also present an accompanying open-source Python package, GSPy, to provide methods and workflows for building the GS-standardized NetCDF files, importing and exporting between common data formats, preparing input files for geophysical inversion software, and visualizing data and inverted models. By using the NetCDF format, handled through the Xarray Python package, and following the CF conventions, we standardize how metadata is recorded and directly stored with the data, from general survey and system information down to specific variable attributes. Utilizing the hierarchical nature of NetCDF, GS-formatted files are organized with a root Survey group that contains global metadata about the geophysical survey. Data are then organized into subgroups beneath Survey and are categorized as Tabular or Raster depending on the geometry and point of origin for the data. Lastly, the standard ensures consistency in constructing and tracking coordinate reference systems, which is vital for accurate portability and analysis. Development and adoption of a NetCDF-based data standard for geophysical surveys can greatly improve how these complex datasets are shared and utilized, making the data more accessible to a broader science community. The architecture of GSPy can be easily transferred to additional geophysical datatypes and methods in future releases.

Frontiers in Earth Science - Environmental Informa↗

USGS2023

Estimating population viability of the northern Great Plains piping plover population considering updated population structure, climate change, and intensive management

One challenge in wildlife conservation is understanding how various threats and management actions may influence long-term population viability. This is particularly evident when there is considerable uncertainty regarding population structure and vital rates. Reassessment of current knowledge and population trends is necessary for listed species to improve management actions that benefit conservation. We present an updated population viability analysis for northern Great Plains piping plovers ( Charadrius melodus circumcinctus ) based on the latest scientific data on survival, fecundity, and connectivity. Further, we explore the consequences of potential management actions and the stochastic effects of global climate change on population viability through changes in survival and fecundity. Our results predict elevated risks of extinction after 50 years (0.088 – 0.373) compared to previous predictions (0.033) based on assumed conditions of low connectivity among four major breeding groups structured as a metapopulation. We explored eight scenarios based on empirically-derived, higher connectivity rates and found that the northern Great Plains population never had a mean predicted population growth rate greater than one (0.946 – 0.996). Two scenarios that simulated a reduction in adult survival showed higher extinction probabilities (0.267 – 0.373), whereas two other scenarios that simulated an increase in fecundity exhibited lower extinction probabilities (0.088 – 0.103). These results indicate that viability of the northern Great Plains population of piping plovers could be improved with management actions that increase fecundity as long as adult survival is not simultaneously reduced. Lastly, breeding groups appeared to function less independently when connectivity rates were higher, as the breeding population was divided evenly among breeding groups. This indicates that the presumed metapopulation structure of our study system may need to be re-evaluated, and that empirically-based estimates of connectivity are essential to assessing population viability of mobile species that exhibit a spatially structured distribution.

Frontiers in Bird Science↗

USGS2021

Integrating high-resolution coastal acidification monitoring data across seven United States estuaries

Beginning in 2015, the United States Environmental Protection Agency’s (EPA’s) National Estuary Program (NEP) started a collaboration with partners in seven estuaries along the East Coast (Barnegat Bay; Casco Bay), West Coast (Santa Monica Bay; San Francisco Bay; Tillamook Bay), and the Gulf of Mexico (GOM) Coast (Tampa Bay; Mission-Aransas Estuary) of the United States to expand the use of autonomous monitoring of partial pressure of carbon dioxide ( p CO 2 ) and pH. Analysis of high-frequency (hourly to sub-hourly) coastal acidification data including p CO 2 , pH, temperature, salinity, and dissolved oxygen (DO) indicate that the sensors effectively captured key parameter measurements under challenging environmental conditions, allowing for an initial characterization of daily to seasonal trends in carbonate chemistry across a range of estuarine settings. Multi-year monitoring showed that across all water bodies temperature and p CO 2 covaried, suggesting that p CO 2 variability was governed, in part, by seasonal temperature changes with average p CO 2 being lower in cooler, winter months and higher in warmer, summer months. Furthermore, the timing of seasonal shifts towards increasing (or decreasing) p CO 2 varied by location and appears to be related to regional climate conditions. Specifically, p CO 2 increases began earlier in the year in warmer water, lower latitude water bodies in the GOM (Tampa Bay; Mission-Aransas Estuary) as compared with cooler water, higher latitude water bodies in the northeast (Barnegat Bay; Casco Bay), and upwelling-influenced West Coast water bodies (Tillamook Bay; Santa Monica Bay; San Francisco Bay). Results suggest that both thermal and non-thermal influences are important drivers of p CO 2 in Tampa Bay and Mission-Aransas Estuary. Conversely, non-thermal processes, most notably the biogeochemical structure of coastal upwelling, appear to be largely responsible for the observed p CO 2 values in West Coast water bodies. The co-occurrence of high salinity, high p CO 2 , low DO, and low temperature water in Santa Monica Bay and San Francisco Bay characterize the coastal upwelling paradigm that is also evident in Tillamook Bay when upwelling dominates freshwater runoff and local processes. These data demonstrate that high-quality carbonate chemistry observations can be recorded from estuarine environments using autonomous sensors originally designed for open-ocean settings.

California, Florida, Maine, New Jersey, Oregon, Te↗

USGS2025

Evidence for marine-driven, cyclical fluctuations in burrow-nesting seabird habitat on the Oregon Coast

Seabirds are among the most threatened birds globally, with the loss or deterioration of coastal breeding habitats posing a severe threat. Natural and anthropogenic disturbances substantially influence coastal ecosystems through erosion and vegetation loss, altering habitat for the wildlife species that depend on them. In addition to these disturbances, oceanographic processes may play an important role in shaping the vegetation at breeding habitats; however, there is limited information on how vegetative conditions for burrow nesting seabirds have changed over time, and whether these changes are related to specific oceanographic or climatic factors. The Oregon Coast National Wildlife Refuge Complex, USA (NWRC) is home to a diverse suite of 1.3 million nesting seabirds from 14 species, which provide valuable ecological, economic, and cultural services, including nutrient transfer to terrestrial habitats and ecotourism for local communities. Over the last 30 years, populations of several burrow nesting seabird species including tufted puffin ( Fratercula cirrhata ) and rhinoceros auklet ( Cerorhinca monocerata ), which breed on offshore islands, have sharply declined along the Oregon Coast. To better understand the potential factors driving these declines, we conducted a spatiotemporal analysis of an aspect of burrow nesting seabird habitat, vegetation cover, within the Oregon Coast NWRC. Specifically, we quantified vegetative cover on 16 islands from 1992 to 2022 using a combination of empirical data, historical aerial photography (1992–2005), and aerial photography from the National Agriculture Imagery Program (2005–2022). Results showed cyclical fluctuations in vegetation cover coast-wide, which were closely related to large scale oceanographic oscillations. Specifically, vegetation cover was negatively correlated with the winter Pacific Decadal Oscillation and positively correlated with the spring El Nino Southern Oscillation. We did not directly compare seabird population trends to vegetation trends; however, quantifying these long-term changes in vegetation at breeding habitats can contribute to our comprehensive understanding of the myriad factors influencing seabird population dynamics and conservation.

Oregon↗

USGS2023

Sea level rise may pose conservation challenges for the endangered Cape Sable seaside sparrow

Biodiversity conservation under a changing climate is a challenging endeavor. Landscapes are shifting as a result of climate change and sea level rise but plant communities in particular may not keep up with the pace of change. Predictive ecological models can help decision makers understand how species are likely to respond to change and then adjust management actions to align with desired future conditions. Florida’s Everglades is a wetland ecosystem that is host to many species, including a large number of endangered and endemic species. Everglades ecosystem restoration has been ongoing for decades, but consideration of sea level rise impacts in restoration planning is more recent. Incorporating potential impacts from sea level rise into restoration planning should benefit species and their coastal habitats, most notably at the southern Florida peninsula. The endangered Cape Sable seaside sparrow ( Ammospiza maritima mirabilis ) occurs in marl prairie habitat at the southern end of the Everglades. The locations of three of its six subpopulations are proximate to the coast. We used a spatially explicit predictive model, EverSparrow, to estimate probability of sparrow presence considering both hydrologic change from restoration and sea level rise. We found that the probability of sparrow presence decreased with increasing sea level rise. Within approximately 50 years, probability of presence significantly decreased for all three coastal subpopulation areas, with areas above 40% probability increasingly limited. Given the exceptionally low dispersal ability of this species and the geographic restrictions for habitat expansion, our results highlight the importance of freshwater flow into the southern Everglades marl prairie for habitat conservation.

Florida↗

USGS2020

Geometric and material variability influences stress states relevant to coastal permafrost bluff failure

Scientific knowledge and engineering tools for predicting coastal erosion are largely confined to temperate climate zones that are dominated by non-cohesive sediments. The pattern of erosion exhibited by the ice-bonded permafrost bluffs in Arctic Alaska, however, is not well explained by these tools. Investigation of the oceanographic, thermal, and mechanical processes that are relevant to permafrost bluff failure along Arctic coastlines is needed. We conducted physics-based numerical simulations of mechanical response that focus on the impact of geometric and material variability on permafrost bluff stress states for a coastal setting in Arctic Alaska that is prone to toppling mode block failure. Our three-dimensional geomechanical boundary-value problems output static realizations of compressive and tensile stresses. We use these results to quantify variability in the loci of potential instability. We observe that niche dimension affects the location and magnitude of the simulated maximum tensile stress more strongly than the bluff height, ice wedge polygon size, ice wedge geometry, bulk density, Young’s Modulus, and Poisson’s Ratio. Our simulations indicate that variations in niche dimension can produce radically different potential failure areas and that even relatively shallow vertical cracks can concentrate displacement within ice-bonded permafrost bluffs. These findings suggest that stability assessment approaches, for which the geometry of the failure plane is delineated a priori, may not be ideal for coastlines similar to our study area and could hamper predictions of erosion rates and nearshore sediment/biogeochemical loading.

Frontiers in Earth Science↗

USGS2025

A short-term sublethal oral exposure to microcystin-LR disrupts cecal microbiome homeostasis in mallard

Introduction: The frequency of cyanobacterial blooms seems to have increased globally in recent decades due to human induced eutrophication and climate change. Cyanobacterial blooms can produce several groups of toxins, among which microcystin-LR (MC-LR) is one of the most abundant. Effects of MC-LR on avian microbiome have not been studied and studies in laboratory murines have been limited to metabarcoding of prokaryotes. Methods: Using RNA shotgun sequencing, we compared the richness and composition of metabolically active prokaryotes, expressed virulence factors, antimicrobial resistance genes, metabolic pathways, Gene Ontology terms, enzymes, and proteins in mallards (Anas platyrhynchos) that were orally exposed to a sublethal dose of MC-LR for one week and unexposed birds. Results: Richness and composition of all compared features did not differ between exposed and control birds and none were differentially expressed between exposure groups. However, richness and/or composition of all features except virulence factors and Carbohydrate Active enzymes had multiple-fold greater dispersion in exposed birds than in controls. This effect was especially pronounced in expressed metabolic (MetaCyc) pathways. Discussion: Our results suggest that MC-LR exposure had a stochastic (rather than deterministic) effect on cecal microbiota, especially its function. Observed disturbance of the microbiota homeostasis is consistent with the Anna Karenina Principle. This principle has been documented in a wide range of eukaryotes using primarily microbial community metabarcoding. Although stochastic disturbance of microbiota function has been hypothesized, our study seems to be the first to demonstrate this in an experimental study.

Wisconsin↗

USGS2017

The role of paleoecology in restoration and resource management—The past as a guide to future decision-making: Review and example from the Greater Everglades Ecosystem, U.S.A

Resource managers around the world are challenged to develop feasible plans for sustainable conservation and/or restoration of the lands, waters, and wildlife they administer—a challenge made greater by anticipated climate change and associated effects over the next century. Increasingly, paleoecologic and geologic archives are being used to extend the period of record of observed data and provide information on centennial to millennial scale responses to long-term drivers of ecosystem change. The development of paleoecology from an emerging field investigating past environments to a highly relevant applied science is reviewed and general examples of the application of paleoecologic research to resource management questions in diverse habitats and regions are provided. Specific examples of the application of paleoecologic research to the restoration of the Greater Everglades Ecosystem of south Florida (U.S.A) are presented. Conducting valuable scientific research that would benefit resource management decisions, however, is not enough. Scientists and resource managers need to be engaged in collaborative discussions from the beginning of the research process to ensure that management questions are being addressed and that the science reaches the people who will benefit from the information. Paleoecology and related disciplines provide an understanding of how ecosystems and individual species function and change over time in response to both natural and anthropogenic drivers. Information on pre-anthropogenic baseline conditions is provided by paleoecologic research, but it is the detection of long-term trends and cycles that allow resource managers to set realistic goals and targets by moving away from the fixed-point baseline concept to one of dynamic landscapes that anticipates and incorporates an expectation of change into decision-making.

Florida↗

USGS2024

Applying portfolio theory to benefit endangered amphibians in coastal wetlands threatened by climate change, high uncertainty, and significant investment risk

The challenge of selecting strategies to adapt to climate change is complicated by the presence of irreducible uncertainties regarding future conditions. Decisions regarding long-term investments in conservation actions contain significant risk of failure due to these inherent uncertainties. To address this challenge, decision makers need an arsenal of sophisticated but practical tools to help guide spatial conservation strategies. Theory asserts that managing risks can be achieved by diversifying an investment portfolio to include assets – such as stocks and bonds – that respond inversely to one another under a given set of conditions. We demonstrate an approach for formalizing the diversification of conservation assets (land parcels) and actions (restoration, species reintroductions) by using correlation structure to quantify the degree of risk for any proposed management investment. We illustrate a framework for identifying future habitat refugia by integrating species distribution modeling, scenarios of climate change and sea level rise, and impacts to critical habitat. Using the plains coqui ( Eleutherodactylus juanariveroi ), an endangered amphibian known from only three small wetland populations on Puerto Rico’s coastal plains, we evaluate the distribution of potential refugia under two model parameterizations and four future sea-level rise scenarios. We then apply portfolio theory using two distinct objective functions and eight budget levels to inform investment strategies for mitigating risk and increasing species persistence probability. Models project scenario-specific declines in coastal freshwater wetlands from 2% to nearly 30% and concurrent expansions of transitional marsh and estuarine open water. Conditional on the scenario, island-wide species distribution is predicted to contract by 25% to 90%. Optimal portfolios under the first objective function – benefit maximization – emphasizes translocating frogs to existing protected areas rather than investing in the protection of new habitat. Alternatively, optimal strategies using the second objective function – a risk-benefit tradeoff framework – include significant investment to protect parcels for the purpose of reintroduction or establishing new populations. These findings suggest that leveraging existing protected areas for species persistence, while less costly, may contain excessive risk and could result in diminished conservation benefits. Although our modeling includes numerous assumptions and simplifications, we believe this framework provides useful inference for exploring resource dynamics and developing robust adaptation strategies using an approach that is generalizable to other conservation problems which are spatial or portfolio in nature and subject to unresolvable uncertainty.

Puerto Rico↗

USGS2021

Changes in rocky intertidal community structure during a marine heatwave in the northern Gulf of Alaska

Marine heatwaves are global phenomena that can have major impacts on the structure and function of coastal ecosystems. By mid-2014, the Pacific Marine Heatwave (PMH) was evident in intertidal waters of the northern Gulf of Alaska and persisted for multiple years. While offshore marine ecosystems are known to respond to these warmer waters, the response of rocky intertidal ecosystems to this warming is unclear. Intertidal communities link terrestrial and marine ecosystems and their resources are important to marine and terrestrial predators and to human communities for food and recreation, while simultaneously supporting a growing coastal tourism industry. Given that current climate change projections suggest increased frequency and duration of marine heatwaves, monitoring and understanding the impacts of heatwaves on intertidal habitats is important. As part of the Gulf Watch Alaska Long-Term Monitoring program, we examined rocky intertidal community structure at 21 sites across four regions spanning 1,200 km of coastline: Western Prince William Sound, Kenai Fjords National Park, Kachemak Bay, and Katmai National Park and Preserve. Sites were monitored annually from 2012 to 2019 at mid and low tidal strata. Before-PMH (2012–2014), community structure differed among regions. We found macroalgal foundation species declined during this period mirroring patterns observed elsewhere for subtidal habitat formers during heatwave events. The region-wide shift from an autotroph-macroalgal dominated rocky intertidal to a heterotroph-filter-feeder dominated state concurrent with the changing environmental conditions associated with a marine heatwave event suggests the PMH had Gulf-wide impacts to the structure of rocky intertidal communities. During/after-PMH (2015–2019), similarities in community structure increased across regions, leading to a greater homogenization of these communities, due to declines in macroalgal cover, driven mostly by a decline in the rockweed, Fucus distichus , and other fleshy red algae in 2015, followed by an increase in barnacle cover in 2016, and an increase in mussel cover in 2017. Strong, large-scale oceanographic events, like the PMH, may override local drivers to similarly influence patterns of intertidal community structure.

Alaska↗

USGS2023

Variations in climate drive behavior and survival of small desert tortoises

In the Mojave Desert, timing and amounts of precipitation profoundly affect availability of water and annual plant foods necessary for the threatened Agassiz’s desert tortoise ( Gopherus agassizii ) to survive, especially during prolonged droughts. As part of recovery actions to increase declining populations, we translocated 83 juvenile and young desert tortoises raised in head-start pens for 4–10 years to a new location 15 km away during fall of 2013 and 2014. We tracked them for 9 years during a megadrought, during multiple years of low rainfall and a few years when precipitation neared or exceeded long-term norms. We evaluated behaviors and how precipitation and forage availability affected survival. At the end of the study, 21.6% of tortoises were alive and 6 had grown to adulthood. Annual models of survival indicated that tortoise size was the driving variable in most years, followed by number of repeatedly used burrows during periods of temperature extremes. Other variables affecting survival in ≥1 year were vegetation, movements during the first 2 years post-translocation, and condition index, a measure of health. Tortoises moved more, expanded home ranges, and grew rapidly in years when winter rainfall approached or exceeded long-term norms and annual plants were available to eat. During dry years, movements and growth were limited. Exceptions to this pattern occurred in the last year of study, a dry year: tortoises grew, moved more, and home ranges increased. The increase in size and approaching adulthood may have stimulated greater travelling. Some left the study area, indicating a need for large release areas. We may have aided survival by offering water twice yearly when handling, because some tortoises drank and increased in mass up to 40%. Prolonged droughts and hotter temperatures can limit recovery of populations, reduce survival of young tortoises, and increase the time to maturity.

California↗

USGS2019

Global observational needs and resources for marine biodiversity

The diversity of life in the sea is critical to the health of ocean ecosystems that support living resources and therefore essential to the economic, nutritional, recreational, and health needs of billions of people. Yet there is evidence that the biodiversity of many marine habitats is being altered in response to a changing climate and human activity. Understanding this change, and forecasting where changes are likely to occur, requires monitoring of organism diversity, distribution, abundance, and health. It requires a minimum of measurements including productivity and ecosystem function, species composition, allelic diversity, and genetic expression. These observations need to be complemented with metrics of environmental change and socio-economic drivers. However, existing global ocean observing infrastructure and programs often do not explicitly consider observations of marine biodiversity and associated processes. Much effort has focused on physical, chemical and some biogeochemical measurements. Broad partnerships, shared approaches, and best practices are now being organized to implement an integrated observing system that serves information to resource managers and decision-makers, scientists and educators, from local to global scales. This integrated observing system of ocean life is now possible due to recent developments among satellite, airborne, and in situ sensors in conjunction with increases in information system capability and capacity, along with an improved understanding of marine processes represented in new physical, biogeochemical, and biological models.

Frontiers in Marine Science↗

USGS2020

Throughfall reduction x fertilization: Deep soil water usage in a clay rich ultisol under loblolly pine in the Southeast USA

Forests in the Southeast USA are predicted to experience a moderate decrease in precipitation inputs over this century that may result in soil water deficiency during the growing season. The potential impact of a drier climate on the productivity of managed loblolly pine (Pinus taeda L.) plantations in the Southeast USA is uncertain. Access to water reserves in deep soil during drought periods may help buffer these forests from the effects of water deficits. To better understand the potential impact of drought on deep soil water, we studied the combined effects of throughfall reduction and fertilization on soil water usage in a clay rich Piedmont Ultisol to a depth of 3 m. In a 6-year-old loblolly pine plantation, we applied a throughfall reduction treatment (ambient vs. ~30% throughfall reduction) and a fertilization treatment (no fertilization vs. fertilization). Over 28 months, throughfall reduction lowered soil moisture for all depths and differences were significant in the surface soils (0–0.3 m) (1.2–3.6%) and deep soils (below 2 m) (2.6–3.6%). Fertilization also lowered soil moisture for all depths and differences were significant at 0.3–0.6 m (2.9%) and 1.94–3.06 m (4.5%). Fertilization when combined with the throughfall reduction treatment significantly decreased soil water at 0.1–0.9 m depth. Soils of all depths were rarely depleted of plant available water with the exception of 0–0.1 m, mainly during the growing season. Under throughfall reduction treatment, soil below 0.9 m consistently accounted for more than half of the change in plant available water during months when transpiration exceeded precipitation. When considering the whole soil profile in this clay rich Ultisol, soil water storage buffered transpirational demand in the face of decreasing throughfall input.

Frontiers in Forests and Global Change↗

USGS2012

Response of biological soil crust diazotrophs to season, altered summer precipitation, and year-round increased temperature in an arid grassland of the Colorado Plateau, USA

Biological soil crusts (biocrusts), which supply significant amounts of fixed nitrogen into terrestrial ecosystems worldwide (~33Tg y -1 ), are likely to respond to changes in temperature and precipitation associated with climate change. Using nifH gene-based surveys, we explored variation in the diazotrophic community of biocrusts of the Colorado Plateau, USA in response to season (autumn vs. spring), as well as field manipulations that increased the frequency of small volume precipitation events and year-round soil temperature. Abundance of nifH genes in biocrusts ranged from 3×10 6 to 1× 8 g -1 soil, and nifH from heterocystous cyanobacteria closely related to Scytonema hyalinum, Spirirestis rafaelensis , and Nostoc commune comprised >98% of the total. Although there was no apparent seasonal effect on total nifH gene abundance in the biocrusts, T-RFLP analysis revealed a strong seasonal pattern in nifH composition. Spirirestis nifH abundance was estimated to oscillate 1 to >2 orders of magnitude between autumn (low) and spring (high). A year-round increase of soil temperature (2–3°C) had little effect on the diazotroph community structure over 2 years. Altered summer precipitation had little impact on diazotroph community structure over the first 1.5years of the study, when natural background patterns across years and seasons superseded any treatment effects. However, after the second summer of treatments, nifH abundance was 2.6-fold lower in biocrusts receiving altered precipitation. Heterocystous cyanobacteria were apparently more resilient to altered precipitation than other cyanobacteria. The results demonstrate that diazotrophic community composition of biocrusts in this semi-arid grassland undergoes strong seasonal shifts and that the abundance of its dominant members decreased in response to more frequent, small volume precipitation events.

Frontiers in Terrestrial Microbiology↗

USGS2016

Organic petrology and geochemistry of mudrocks from the lacustrine Lucaogou Formation, Santanghu Basin, northwest China: Application to lake basin evolution

Exploration for tight oil in the frontier Santanghu Basin of northwest China has resulted in recent commercial discoveries sourced from the lacustrine Upper Permian Lucaogou Formation, already considered a “world class source rock” in the Junggar Basin to the west. Here we apply an integrated analytical program to carbonate-dominated mudrocks from the Lucaogou Formation in Santanghu Basin to document the nature of organic matter (OM) in the context of an evolving lake system. The organic-rich samples (TOC 2.8–11.4 wt%; n = 10) were widely spaced from an ~ 200 m cored section, interpreted from textural and mineralogical evidence to document transition from a lower under-filled to an overlying balanced-filled lake. Organic matter is dominated by moderate to strongly fluorescent amorphous material with Type I geochemical signature (HI values 510–755; n = 10) occurring in a continuum from lamellar stringers, 10–20 μm thick, some ≥ 1 mm in length (possible microbial mat; preserved only in lower under-filled section) to finely-disseminated amorphous groundmass intimately intermixed with mineral matrix. Biomarkers for methanotrophs and photosynthetic cyanobacteria indicate a complex microbial consortium. A unicellular prasinophyte green alga(?), similar to Tasmanites in marine rocks, is present as discrete flattened discs 50–100 μm in diameter. Type III OM including vitrinite (some fluorescent) and inertinite also is abundant. Solid bitumen, indicating local kerogen conversion, fills voids and occurs throughout the cored section. Vitrinite reflectance values are 0.47–0.58%, consistent with strong OM fluorescence but may be “suppressed”. Other proxies, e.g., biomarker parameters, indicate the Lucaogou Formation is in the early oil window at this location. On average, slightly more amorphous OM and telalginite are present in the lower section, consistent with a shallow, stratified, saline environment with low sediment dilution. More inertinite is present in the upper section, indicating greater terrestrial influx and consistent with higher quartz and plagioclase content (dominantly authigenic chalcedony and albite). Laminated mudstones in the upper section indicate anoxia prevented bioturbation from benthic grazing, also indicating stratified water column conditions. A decrease upsection in authigenic dolomite with reciprocal increase of ankerite/siderite is consistent with decreasing salinity, as is an overall decrease in gammacerane index values. These observations suggest evolution from a shallow, stratified evaporative (saline) setting to a deeper, stratified freshwater basin with higher water input during Lucaogou deposition. The evolution from an under-filled to balance-filled lake in Santanghu Basin is similar to Lucaogou deposition in Junggar Basin, suggesting similar tectonic and climatic controls. Paleoclimate interpretations from other researchers in this area suggested an evolution from semi-arid to humid conditions during the Roadian; we interpret that the evolution from an under-filled to balanced-filled lake seen in our data is in response to climate change, and may represent increased groundwater delivery to the Santanghu Basin.

International Journal of Coal Geology↗