How accurately does eDNA reflect the spatial distribution of cold-water fish? Field validation from a temperate lake

Alexander L. Koeberle; Meredith L. Bartron; Aaron P. Maloy; Christopher B. Rees; Lauren M. Atkins; Webster Pearsall; Brad E. Hammers; Daniel Mulhall; James E. McKenna; Marc Chalupnicki; Lewis P. McCaffrey; Suresh A. Sethi

doi:10.1111/fwb.70089

USGS · 70280480

How accurately does eDNA reflect the spatial distribution of cold-water fish? Field validation from a temperate lake

Alexander L. Koeberle·Meredith L. Bartron·Aaron P. Maloy·Christopher B. Rees·Lauren M. Atkins·Webster Pearsall·Brad E. Hammers·Daniel Mulhall·James E. McKenna·Marc Chalupnicki·Lewis P. McCaffrey·Suresh A. Sethi

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Abstract

Applications of environmental DNA (eDNA) based detection technology to evaluate the distribution of aquatic organisms are increasing; yet field validations of eDNA are important to measure accuracy in study systems. To successfully apply this technology to species conservation, it is critical to understand how both species biology and environmental conditions affect the accuracy of inference from eDNA detection data. We implemented a field assessment of the accuracy and spatial resolution of eDNA-based species distributions for a native cold-water, schooling fish, cisco Coregonus artedi , that has been reintroduced to a deep temperate lake. We leveraged a combination of acoustic telemetry, providing known spatial locations of tagged fish, and lake-wide eDNA sampling to infer their distribution in Keuka Lake, New York, USA. Sub-surface (12 m and 18 m depths) eDNA samples were collected to accommodate the diel vertical migration behaviour of this fish species. The results of this study validated the accuracy of positive eDNA detections with the distribution of tagged fish to coarse spatial scales. Yet, several fine-scale locations revealed a mismatch between eDNA and acoustic telemetry detections; consistent with rapid transport of genetic material via lake currents. Empirical measurements of lake currents using drifters found cisco eDNA detections could deviate from specimens' source locations by as much as 3.3 km at 12 m depth or 1.5 km at 18 m depth over a 24 h transport period. Our study indicates that accurate species distributions estimated from eDNA sampling in lakes may require further understanding of transport mechanisms and persistence of environmental genetic material to relate point detections to source animal locations. Integrating eDNA sampling with additional data collection of species biology and environmental conditions will increase the spatial resolution of fish distribution assessments.

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Freshwater Biology Article

Source-reported bounding extent: 42.39661765694771° to 42.66665660058703° latitude; -77.24393289568195° to -77.04243994736115° longitude. This indicates report coverage, not an exact sampling location. View area on OpenStreetMap.

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Alexander L. Koeberle, Meredith L. Bartron, Aaron P. Maloy, Christopher B. Rees, Lauren M. Atkins, Webster Pearsall, Brad E. Hammers, Daniel Mulhall, James E. McKenna, Marc Chalupnicki, Lewis P. McCaffrey, Suresh A. Sethi. 2025-09-19. How accurately does eDNA reflect the spatial distribution of cold-water fish? Field validation from a temperate lake. https://doi.org/10.1111/fwb.70089

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