Effects of 2D hydrodynamic model resolution on habitat estimates for rearing Coho Salmon in contrasting channel forms

Reuben B. Smit; Damon H. Goodman; Josh Boyce; Nicholas A. Som

doi:10.1002/rra.4341

Home/Archive/USGS

USGS · 70266791

Effects of 2D hydrodynamic model resolution on habitat estimates for rearing Coho Salmon in contrasting channel forms

Reuben B. Smit·Damon H. Goodman·Josh Boyce·Nicholas A. Som

View original source ↗Export metadata ↓

Abstract

Estimating the impacts of water allocation decisions on fish populations and habitat availability is an important part of environmental flow assessments, especially in locations where water resources are limited. Two-dimensional hydrodynamic models (2DHMs) are commonly coupled with biological models to estimate fish habitat quality, area, and capacity across a range of proposed streamflows. Increasingly, resource managers are relying on landscape-scale model domains with coarse model resolutions to maintain feasible computational loads, but this may affect habitat estimates if the mesh element size of the model exceeds the spatial scale relevant to the organism. We investigated how coarsening the resolution of a 2DHM influences the area and spatial distribution of estimated Coho Salmon ( Oncorhynchus kisutch ) fry habitats. We used an interpolation scheme that upscaled mesh elements from a high-resolution (0.25 m 2 ) 2DHM to quantify and visualize the effects of 2DHM resolution on estimates of Coho Salmon fry habitat for two contrasting channel morphologies and across a broad range of streamflows. Estimates of Coho Salmon fry habitat at increasingly coarser resolutions led to 20%–50% reductions in weighted usable habitat area (WUA) across several streamflow scenarios for a complex channel type, but did not impact estimates in a confined, flume-like channel. Additionally, flow-to-habitat area relationships were not congruent at a given streamflow when resolution coarsened. Along with almost 500% more high-quality habitat area estimated in the complex channel type over the confined, discrepancies in habitat area increased with higher flows in areas defined as optimal for rearing Coho Salmon fry. Considering that complex channel types contain critical habitat for Coho Salmon fry, this study suggests coarse 2DHM resolutions may exclude important wetted edge and off-channel habitats from environmental flow assessments.

Explore related subjects

River Research and Applications Article

Source-reported bounding extent: 40.99630781093455° to 41.83088947125944° latitude; -124.0773085299801° to -122.45499088828635° longitude. This indicates report coverage, not an exact sampling location. View area on OpenStreetMap.

Keep this discovery

Explore connections, maps & timelines

BibTeX RIS

Reuben B. Smit, Damon H. Goodman, Josh Boyce, Nicholas A. Som. 2024-07-07. Effects of 2D hydrodynamic model resolution on habitat estimates for rearing Coho Salmon in contrasting channel forms. https://doi.org/10.1002/rra.4341

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

USGS2026

Non-physical barrier design and environmental conditions alter routing and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta

Pacific salmon face substantial challenges when migrating through anthropogenically modified river systems, such as the Sacramento-San Joaquin River Delta (the Delta). Non-physical behavioral barriers, such as the bioacoustic fish fence (BAFF), are one potential solution for guiding fish away from hazards without obstructing water flow. However, the effectiveness of these technologies depends on abiotic and biotic conditions. In the Delta, a BAFF was deployed at Georgiana Slough in 2011, 2012, and 2024 to deter juvenile Chinook salmon ( Oncorhynchus tshawytscha ) from migrating into the interior Delta, a region associated with lower survival than the mainstem Sacramento River. We leveraged nine years of acoustic telemetry data to evaluate BAFF performance across flow conditions and two BAFF designs (2011/2012 vs. 2024), and to assess the BAFF's contribution to improving through-Delta survival. The BAFF reduced routing into Georgiana Slough from 26.5% without a barrier to 8.9% in 2011/2012 and 15.9% in 2024. In general, routing into Georgiana Slough increased with the proportion of flow entering the channel during periods without a BAFF and during the 2024 deployment but remained constant during the 2011/2012 deployment. Additionally, BAFF effectiveness declined with increasing input flow. Ultimately, reduced routing into Georgiana Slough during the 2024 BAFF deployment resulted in an increase in estimated through-Delta survival between 0.2 and 1.6 percentage points depending on release group. Our results provide valuable insights into the role of non-physical barriers in complex river systems and inform future management strategies for protecting migrating juvenile Chinook salmon in the Sacramento-San Joaquin River Delta.

California↗

USGS2026

Population dynamics of Northern Pearl Dace Margariscus nachtriebi in anthropogenically altered headwater streams of the Nebraska Sandhills Ecoregion

Empirical evidence of population demographic responses to environmental perturbations is a major knowledge gap for aquatic vertebrate populations. Extensive habitat alteration including channelization of headwater streams influences the habitat template on which small-bodied fish are dependent to carry out distinct life stages and maintain or increase population growth. The objectives of this study were to (1) determine differences in geomorphic characteristics, and instream habitat (i.e., mesohabitat availability, water depth, and macrophyte coverage) in channelized and unchannelized stream sites, and (2) estimate survival of Northern Pearl Dace Margariscus nachtriebi in channelized and unchannelized stream sites. A capture-mark-recapture robust design study was conducted where a total of 1994 Northern Pearl Dace were double tagged and 853 were recaptured over the 374-day field study. Geomorphic characteristics and instream habitat in channelized and unchannelized stream sites differed (Pillai's Trace = 0.950, F (8, 6) = 14.228, p = 0.002). Specifically, mean sinuosity index ( F (1, 13) = 20.723, p = 0.0005) and the percentage of pool mesohabitat ( F (1, 13) = 4.929, p = 0.045) were both reduced in channelized versus unchannelized stream sites. Northern Pearl Dace seasonal survival was lower in channelized sites (Ŝ Spring to Summer = 0.34; SE = 0.06) compared to unchannelized sites (Ŝ Spring to Summer = 0.93; SE = 0.03) during spring to summer. Annual survival differed between channelized sites (Ŝ = 0.001; SE = 0.009) and unchannelized sites (Ŝ = 0.047; SE = 0.024). Channelization in headwater streams influenced population demographic parameters of stream fish. Northern Pearl Dace exhibited reduced survival in channelized sections of headwater streams flowing through the largest intact grassland ecosystem in North America. Mitigating channelization in streams may benefit persistence of native prairie fishes by increasing survival and subsequently aid in the restoration of headwater streams that flow through grassland ecosystems in North America.

Nebraska↗

USGS2026

Development and assessment of fluorescent-dyed, preserved invasive grass carp (Ctenopharyngodon idella) eggs as surrogates for live eggs in transport and dispersal control experiments

Invasive species such as grass carp ( Ctenopharyngodon idella ) pose substantial ecological threats to North American freshwater ecosystems. Understanding their early life stage behavior is critical for management efforts. From spawning to hatching, invasive carp eggs must remain suspended in the water column while drifting downstream for the best chance of survival. This highly vulnerable life stage is a potential target for population control to reduce recruitment. However, studying egg transport and potential dispersal control techniques is challenging, because the availability of live eggs and time period for experimentation are extremely limited. Additionally, accurately replicating the physical characteristics and transport mechanisms of fish eggs using surrogates in laboratory and field studies is not trivial. This study presents a novel method to create fluorescein-dyed, preserved grass carp eggs as surrogates for live eggs in transport and dispersal control experiments. This technique enables year-round studies of grass carp egg transport, offering managers a reliable tool for developing and testing dispersal control and passive sampling methods for invasive carp eggs. In this study, we rehydrate and dye preserved grass carp eggs in varying concentrations of aqueous fluorescein for a range of rehydration times, evaluate dye retention and egg visibility under ultraviolet light (UV-A), and measure diameters and settling velocities for comparison with live eggs. Eggs rehydrated in 0.100 g per liter fluorescein for 30 min maintain adequate brightness for up to 40 min in mixed conditions and exhibit mean settling velocities and densities similar to live eggs, making them ideal for laboratory experiments using quantitative imaging techniques.

River Research and Applications↗