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USGS · 70256174

NASA Champions 2024: Data strategies for when to use cloud, coding strategies for parallelization, & first examples of big science in the Cloud

Abstract

From April-May 2024, the NASA Mentors who span eleven Distributed Active Archive Centers (DAACs) co-led the third Champions Cohort with the NASA Openscapes project team, this year focusing on, teaching lessons they adapted for geospatial and cloud analysis. The Cohort included nine international research teams from academia and government that were curious about working with NASA Earthdata in the Cloud. Many teams were interested in using data from multiple DAACs. User cloud adaption takes time, given the new conceptual mindsets and technical skillsets it requires. During the ten weeks we worked together, NASA Mentors refined and extended previous lessons to focus on thinking through and planning the transition to using the Cloud for science research and applications, and initial experiments using the Cloud through our 2i2c JupyterHub. Below are these updates and YouTube clips! There were also recurring themes/questions that we have heard before, some of which remain as open questions and continue to remain a challenge. Importantly, Amazon Web Services (AWS) Cloud onboarding, when to use what resources, how to set them up, and how to discuss needs with organizational leadership and IT staff, which often falls outside the scope of NASA DAACs, yet it’s a key element of helping users adopt the Cloud and use NASA data in the Cloud. It is encouraging to hear some of the champions starting to have conversations with their institutions, IT departments, and making their needs known, which is likely a big part of the solution, too. We are thankful to NASA Openscapes Champions for informing and nudging these conversations! All of this work is underpinned by Openscapes and NASA’s commitment to open science practices and a kinder collaborative culture. This cohort is funded by NASA and is part of our NASA Openscapes Framework project.

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Michele Thornton, Catalina Taglialatela, Luis Lopez, Matt Fisher, Alexis Hunzinger, Mahsa Jami, Brianna M. Lind, Cassie Nickles, Andy Teucher, Aronne Merrelli, Erin Robinson, Julie Lowndes. 2024. NASA Champions 2024: Data strategies for when to use cloud, coding strategies for parallelization, & first examples of big science in the Cloud. https://pubs.usgs.gov/publication/70256174

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Factors affecting benthic macroinvertebrate health in the City of Roanoke, Virginia, 2020–2023

Major waterways in the City of Roanoke (City) have failed to meet Virginia’s aquatic life designated use since 1996. Segments of the upper Roanoke River lack healthy benthic macroinvertebrate communities which prompted a total maximum daily load (TMDL) study by the Virginia Department of Environmental Quality (VDEQ) to identify the most probable stressor(s) causing the impairment. Excess fine sediment was identified as the most probable stressor impairing benthic macroinvertebrates on portions of the Roanoke River in 2006, and a watershed implementation plan published in 2016 required communities within the impaired watershed to implement projects that would reduce the load of fine sediment entering the Roanoke River. Additional benthic macroinvertebrate sampling and stream habitat assessments along the Roanoke River and Tinker Creek (a tributary to the Roanoke River that flows through the City) revealed continued impaired conditions, and subsequent stressor identification analysis was completed in 2023. Samples collected downstream of the City on the Roanoke River and Tinker Creek generally showed more impaired conditions relative to samples collected at locations upstream of the City. Based on this evaluation, sediment and sediment-bound polychlorinated biphenyls (PCBs) were identified as probable stressors while specific conductance, total nitrogen, and sediment metals were possible stressors in Tinker Creek; however, only a sediment TMDL target was identified to address impaired benthic macroinvertebrate communities. In the Roanoke River upstream of the Niagara Dam, sediment and total phosphorus were identified as probable stressors, sediment polycyclic aromatic hydrocarbons and sediment PCB were considered possible stressors; however, the TMDL target was only for total phosphorus. The City partnered with the U.S. Geological Survey (USGS) in 2016 to continuously monitor water quality and streamflow conditions on a major tributary of Tinker Creek, Lick Run, and by 2020, four similar monitoring stations were installed on the Roanoke River and Tinker Creek near the locations of benthic macroinvertebrate sampling. Monitored parameters included streamflow and/or gage height (water level), water temperature, pH, dissolved oxygen, specific conductance, and turbidity. Turbidity is a measure of the relative clarity of the water and was previously used to model suspended-sediment concentrations at the monitoring stations. The City also contracted Kirk Environmental, LLP (KE) to collect benthic macroinvertebrate samples and stream habitat assessments near the locations of the water-quality monitoring stations. Identified benthic macroinvertebrates were used to calculate the Virginia Stream Condition Index (SCI), a multi-metric index composed of eight biological attributes that represent elements of the structure and function of the benthic macroinvertebrate community that measure diversity, composition, and tolerance to pollution. Study objective: In this report, benthic macroinvertebrate samples and stream habitat assessment scores collected at four locations on the Roanoke River and Tinker Creek by KE and the VDEQ between 2020 and 2023 were compared to measured water-quality and streamflow conditions prior to sampling to evaluate patterns between benthic macroinvertebrate health, water quality, and hydrology.

Virginia