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USGS · 70125279

Guidelines for use of fishes in research

Abstract

The 2004 and 2014 Guidelines were developed to provide a structure that advances appropriate attention toward valid experimental designs and procedures with aquatic animals while ensuring humane treatment of the experimental subjects. At a practical level, the Guidelines are intended to provide general recommendations on field and laboratory endeavors, such as sampling, holding, and handling fishes; to offer information on administrative matters, including regulations and permits; and to address typical ethical concerns, such as perceptions of pain or discomfort experienced by experimental subjects. These Guidelines must be recognized as guidelines . They are not intended to provide detailed instructions but rather to alert investigators to a broad array of topics and concerns to consider prior to initiating study. At a comprehensive level, the principles upon which these Guidelines are based are broadly applicable, and many of the described practices and approaches can be adapted to situations involving other aquatic animal species and conditions. Understanding the differences between fishes and other vertebrates, especially mammals, is critically important to conducting scientifically sound research with fishes. Disparities in life histories and mortality rates in fishes versus other vertebrates are critical in designing sustainable sampling levels in fish populations. The UFR Committee points out that (1) compared to mammalian populations, adult populations of many fish species persist despite very high natural mortality rates in juvenile stages by virtue of the fact that most species lay thousands or tens of thousands of eggs; (2) because of these mortality patterns, research on fishes, especially field research or research on early life stages, can involve, and often requires, much larger numbers of research subjects than does research on mammals; and (3) the animal handling and husbandry requirements for fishes are fundamentally different from those for mammals and other vertebrates, in general. Policies, regulations, and recommendations developed for research on mammals, birds, reptiles, or even amphibians are frequently inappropriate for research with fishes. The Guidelines also address some of the ethical concerns that motivate guidelines used for research with other vertebrates, while being mindful of the unique physiology and general nature of fishes. The Guidelines were developed for general use by investigators within the United States; therefore, the roles, responsibilities, and informational needs of Institutional Animal Care and Use Committees (IACUCs) were given specific attention. All United States institutions that use vertebrate animals for research, teaching, research training, and biological testing are required to create an IACUC to oversee and evaluate all aspects of the institution’s animal care and use program. Investigators from other nations who read this document may disregard specific references to U.S. state and federal laws and regulations, as their institutional infrastructure and processes may differ from those of an internal committee such as IACUCs. The principles described herein, however, are applicable to research on fishes regardless of geographic location. Investigators in other nations may benefit by modifying any of the specific provisions pertaining to the United States, thereby adopting guidelines consistent with the laws and regulations of their own government. The UFR Committee urges that the Guidelines be endorsed and adopted (adapted, where necessary) by those state and federal authorities with regulatory responsibilities for fishes, offices with federal oversight (e.g., National Institutes of Health, Office of Laboratory Animal Welfare; http://grants.nih.gov/grants/olaw/olaw.htm ) as well as by universities and other institutions and authorities using fishes and aquatic animals within their research and teaching programs.

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BibTeXRIS

J. A. Jenkins, H.L. Bart, James D. Bowker, P.R. Bowser, J.R. MacMillan, J.G. Nickum, J. D. Rose, P. W. Sorenson, G.W. Whitledge, J.W. Rachlin, B.E. Warkentine, H. L. Bart. 2014. Guidelines for use of fishes in research. https://pubs.usgs.gov/publication/70125279

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Factors affecting benthic macroinvertebrate health in the City of Roanoke, Virginia, 2020–2023

Major waterways in the City of Roanoke (City) have failed to meet Virginia’s aquatic life designated use since 1996. Segments of the upper Roanoke River lack healthy benthic macroinvertebrate communities which prompted a total maximum daily load (TMDL) study by the Virginia Department of Environmental Quality (VDEQ) to identify the most probable stressor(s) causing the impairment. Excess fine sediment was identified as the most probable stressor impairing benthic macroinvertebrates on portions of the Roanoke River in 2006, and a watershed implementation plan published in 2016 required communities within the impaired watershed to implement projects that would reduce the load of fine sediment entering the Roanoke River. Additional benthic macroinvertebrate sampling and stream habitat assessments along the Roanoke River and Tinker Creek (a tributary to the Roanoke River that flows through the City) revealed continued impaired conditions, and subsequent stressor identification analysis was completed in 2023. Samples collected downstream of the City on the Roanoke River and Tinker Creek generally showed more impaired conditions relative to samples collected at locations upstream of the City. Based on this evaluation, sediment and sediment-bound polychlorinated biphenyls (PCBs) were identified as probable stressors while specific conductance, total nitrogen, and sediment metals were possible stressors in Tinker Creek; however, only a sediment TMDL target was identified to address impaired benthic macroinvertebrate communities. In the Roanoke River upstream of the Niagara Dam, sediment and total phosphorus were identified as probable stressors, sediment polycyclic aromatic hydrocarbons and sediment PCB were considered possible stressors; however, the TMDL target was only for total phosphorus. The City partnered with the U.S. Geological Survey (USGS) in 2016 to continuously monitor water quality and streamflow conditions on a major tributary of Tinker Creek, Lick Run, and by 2020, four similar monitoring stations were installed on the Roanoke River and Tinker Creek near the locations of benthic macroinvertebrate sampling. Monitored parameters included streamflow and/or gage height (water level), water temperature, pH, dissolved oxygen, specific conductance, and turbidity. Turbidity is a measure of the relative clarity of the water and was previously used to model suspended-sediment concentrations at the monitoring stations. The City also contracted Kirk Environmental, LLP (KE) to collect benthic macroinvertebrate samples and stream habitat assessments near the locations of the water-quality monitoring stations. Identified benthic macroinvertebrates were used to calculate the Virginia Stream Condition Index (SCI), a multi-metric index composed of eight biological attributes that represent elements of the structure and function of the benthic macroinvertebrate community that measure diversity, composition, and tolerance to pollution. Study objective: In this report, benthic macroinvertebrate samples and stream habitat assessment scores collected at four locations on the Roanoke River and Tinker Creek by KE and the VDEQ between 2020 and 2023 were compared to measured water-quality and streamflow conditions prior to sampling to evaluate patterns between benthic macroinvertebrate health, water quality, and hydrology.

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