Empirical model of Skeletonema costatum photosynthetic rate, with applications in the San Francisco Bay estuary

James E. Cloern

doi:10.1016/0309-1708(78)90040-4

Home/Archive/USGS

USGS · 70012492

Empirical model of Skeletonema costatum photosynthetic rate, with applications in the San Francisco Bay estuary

James E. Cloern

View original source ↗Export metadata ↓

Abstract

An empirical model of Skeletonema costatum photosynthetic rate is developed and fit to measurements of photosynthesis selected from the literature. Because the model acknowledges existence of: 1) a light-temperature interaction (by allowing optimum irradiance to vary with temperature), 2) light inhibition, 3) temperature inhibition, and 4) a salinity effect, it accurately estimates photosynthetic rates measured over a wide range of temperature, light intensity, and salinity. Integration of predicted instantaneous rate of photosynthesis with time and depth yields daily net carbon assimilation (pg C cell −1 day −1 ) in a mixed layer of specified depth, when salinity, temperature, daily irradiance and extinction coefficient are known. The assumption of constant carbon quota (pg C cell −1 ) allows for prediction of mean specific growth rate (day −1 ), which can be used in numerical models of Skeletonema costatum population dynamics. Application of the model to northern San Francisco Bay clearly demonstrates the limitation of growth by low light availability, and suggests that large population densities of S. costatum observed during summer months are not the result of active growth in the central deep channels (where growth rates are consistently predicted to be negative). But predicted growth rates in the lateral shallows are positive during summer and fall, thus offering a testable hypothesis that shoals are the only sites of active population growth by S. costatum (and perhaps other neritic diatoms) in the northern reach of San Francisco Bay.

Explore related subjects

Advances in Water Resources Article

Source-reported bounding extent: 37.3957605043622° to 38.24440703031118° latitude; -122.57745968735097° to -121.22039965621613° longitude. This indicates report coverage, not an exact sampling location. View area on OpenStreetMap.

Keep this discovery

Explore connections, maps & timelines

BibTeX RIS

James E. Cloern. 1978. Empirical model of Skeletonema costatum photosynthetic rate, with applications in the San Francisco Bay estuary. https://doi.org/10.1016/0309-1708(78)90040-4

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related USGS reports

USGS2025

Karhunen–Loève deep learning method for surrogate modeling and approximate Bayesian parameter estimation

We evaluate the performance of the Karhunen–Loève Deep Neural Network (KL-DNN) framework for surrogate modeling and approximate Bayesian parameter estimation in partial differential equation models. In the surrogate model, the Karhunen–Loève (KL) expansions are used for the dimensionality reduction of the number of unknown parameters and variables, and a deep neural network is employed to relate the reduced space of parameters to that of the state variables. The KL-DNN surrogate model is used to formulate a maximum-a-posteriori-like least-squares problem, which is randomized to draw samples of the posterior distribution of the parameters. We test the proposed framework for a hypothetical unconfined aquifer via comparison with the forward MODFLOW and inverse PEST++ iterative ensemble smoother (IES) solutions as well as the state-of-the-art Fourier neural operator (FNO) and deep operator networks (DeepONets) operator learning surrogate models. Our results show that the KL-DNN surrogate model outperforms FNO and DeepONet for forward predictions. For solving inverse problems, the randomized algorithm provides the same or more accurate Bayesian predictions of the parameters than IES as evidenced by the higher log predictive probability of both the estimated parameter field and the forecast hydraulic head. The posterior mean obtained from the randomized algorithm is closer to the reference parameter field than that obtained with FNO as the maximum a posteriori estimate.

Advances in Water Resources↗

USGS2025

The acoustic-Doppler current profiler (ADCP): A comprehensive tool for river-reach hydromorphodynamics

This paper introduces the use of acoustic Doppler current profiler (ADCP) measurements as input for the Acoustic Mapping Velocimetry (AMV) method, a technique for characterizing the dynamics of riverine bedforms. The performance of this new approach, ADCP-AMV, is compared with input from a multibeam echosounder through a field study conducted on the Mississippi River (USA). A virtual ADCP tool has been created to support the ADCP-AMV measurements with optimal data density predictions. To the authors’ knowledge, this is the first time ADCP measurements have been used in conjunction with the AMV dune-tracking method. Subsequently, the paper discusses the coupling of ADCP-AMV measurements with ancillary data extracted from the ADCP. These ancillary data are processed using previously developed protocols to characterize hydrodynamics and the suspended sediment distribution in the water column. This paper emphasizes the capability of ADCPs to characterize open-channel river hydromorphodynamic parameters with high spatiotemporal resolution. Recommendations to accurately and efficiently acquire these multi-variable measurements and derived datasets are discussed.

Tennessee↗

USGS2024

Precipitation uncertainty estimation and rainfall-runoff model calibration using iterative ensemble smoothers

The introduction of iterative ensemble smoothers (IES) for parameter calibration opens avenues for expanding parameter space in surface water hydrologic modeling. Here, we have introduced independent parameters into a model calibration experiment to estimate errors in rainfall forcing data. This approach has the potential to estimate rainfall errors using other hydrological observations and to improve model calibration. Using high-resolution rain gauge data, we estimated “real” rainfall errors across the Turkey River watershed at storm and daily scales. Tests on synthetic and real-world scenarios successfully estimated errors correlated with observed values – even at daily scales. However, a bias remained from model parameter compensation, and identifying errors was challenging for low precipitation and snowfall. Despite synthetic results showing good error correlation, the biases in parameter identification masked potential improvements in hydrological calibration. This study highlights the potential of IES to provide additional information on rainfall errors, even only using streamflow observations.

Advances in Water Resources↗