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Research about Wind River

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Wind River subbasin restoration: Annual report of U.S. Geological Survey activities January 2024 through December 2024

We sampled juvenile wild Oncorhynchus mykiss (Steelhead Trout) in headwater streams of the Wind River, Washington, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. Additionally, this sampling provides an index of abundance of non-native Brook Trout Salvelinus confluentus . We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over 25 years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an inadequate adult ladder and contributed to increased water temperatures, to near lethal levels for salmonids. Data from our study, and companion work by WDFW, are contributing to the Columbia Basin Fish and Wildlife Program (2009) Research, Monitoring, and Evaluation (RM&E) Strategy of Fish Population Status Monitoring. Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2024, we PIT-tagged 2,075 Steelhead Trout parr (age-0 and age-1), in the Trout Creek and upper Wind River watersheds. Age-0 and age-1 parr were at high abundance due to strong spawner numbers in 2023 and 2024 (Estimate of 932 in 2023; and a moderate number of spawners in 2024 though an estimate is not available at this time; 24-year median = 619; Charlie Cochran, WDFW Fish Biologist, personal commun., 2025). An additional 100 parr (age-0 and age-2 or older) were tagged to provide fish for estimating detection efficiencies at PTISs. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trapping, instream PTISs and Columbia River mainstem PIT-tag detection. We maintained and upgraded six instream PTISs to detect PIT-tagged Steelhead Trout parr, smolts, and adults, providing data for population assessments, and life-cycle research. Detection data from PIT-tagged adult Steelhead Trout at our four primary PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Most adult Steelhead detected were tagged by WDFW at an adult trap in the lower Wind River and some as smolts at screw traps. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during eight of the past ten years and have exceeded 97% at our primary PTIS in the Wind River during nine of the past ten years. Adult escapement estimates to tributary watersheds are helping evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. Detections at the instream PTISs have shown trends of age-0 and age-1 Steelhead Trout parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Our data suggest that most fish from a cohort that migrate downstream will do so at age-1 for additional rearing in the subbasin. We have estimated that from 15% to 56% of parr tagged as age-0 fish in headwater areas make downstream migrations at age-1 for additional rearing (median = 29%). We have estimated that from 1% to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall (median = 3.5%): this is especially pronounced in the upper Wind River portion of the watershed (median 10%). These findings raise questions about parr rearing habitat and whether migrations are density- or habitat-quality driven, and answers to such questions are long-term goals of this study as active and passive habitat restoration occurs. Repeat sampling at sites in the subbasin within and between years has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer have been similar across the subbasin, though slightly lower in the Trout Creek watershed (Trout Creek sites, 0.57 - 1.25%/day, Wind River sites = 0.94 – 2.48%/day). Summer growth rates have been lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed (Trout Creek sites, = 0.03 - 0.14%/day, Wind River sites = 0.05 – 0.19%/day). Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. During 2024 range of mean daily relative change in weight from the previous year for age-0 tagged fish was: Trout Creek sites = 0.96 – 1.41%/day, Wind River sites = 0.80 – 1.30 %/day; and for age1 tagged fish was: Trout Creek sites = 0.37 - 0.50 %/day, Wind River sites = no age-1 tagged recaptures. Non-native Brook Trout are present in the subbasin, chiefly the Trout Creek watershed. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 – 2003 to the period 2011 – 2024 (range of decrease = 19 - 82%). Percent-of-catch (of 64 samples, 52 < 10%; 3 > 20%) and number of Brook Trout at the Trout Creek sites from 2011 through 2024, though variable, have generally declined. Habitat restoration evaluation efforts are critical to ensure efficient use of money and resources but require long-term monitoring of population metrics. Detailed viable salmonid population and life-history data, such as that provided by PIT-tagging and instream PTIS networks inform fisheries policy and management and enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek and proposed major instream habitat restoration in the upper Wind River.

Washington↗

Collection of larval lampreys (Entosphenus tridentatus and Lampetra spp.) using a portable suction dredge—A pilot test

A portable suction-dredge and sluice-box system were used to collect larval lampreys ( Entosphenus tridentatus and Lampetra spp.) from fine and coarse sediment in field and laboratory tests. We evaluated the injury rate, survival, and burrowing capability of lamprey following passage through the dredge system and used collection of lamprey from water without sediment as a control. The system used a hydraulic eductor (also known as a Venturi valve) to create suction so that sediment and lamprey avoided passage through the pump impeller. For the field test, lamprey were tagged with visible elastomer implants based on small (89 millimeter [mm] or less) and large (92 mm or more) size categories and stocked into mesh enclosures over fine or coarse sediment. The dredge was used inside each enclosure to collect lamprey and they were transported to the laboratory for evaluation and holding. The mean time to burrow was recorded for each study group (3 fine, 3 coarse, 3 controls) on the day of the field test; injury was evaluated at 24 hours; and survival was evaluated at 24 hours, and at 7 and 14 days after the test. The suction dredge collected 32 lamprey in fine sediment, 21 lamprey in coarse sediment, and 28 lamprey in the control group, including 30 lamprey that were not initially stocked. One lamprey died the day of the test (fine sediment) and 24 hours later, three lamprey were found to be injured (2 in fine and 1 in coarse sediment). No injuries or mortalities occurred in the control group. Lamprey burrowing performance was similar across the two treatment groups and the controls. The mean time for all fish in a group to burrow was highly variable. For all groups in a treatment combined, the mean burrow times were fastest for the fine treatment (9.8 minutes), followed by the controls (11.4 minutes) and the coarse treatment (11.6 minutes). The mean times to burrow for the main group of fish in each treatment group (those that burrowed in quick succession) were similar: 4.3 minutes for the fine group, 4.4 minutes for the coarse group, and 4.5 minutes for the controls. The laboratory test collected 147 lamprey (73 small and 74 large size category) from coarse sediment using the same procedures as the field test. One fish (small) was killed the day of the test, and six lamprey (3 small and 3 large) were found with injuries during the 24-hour exams. No mortalities were recorded 7 days after the test, when monitoring was terminated. The overall injury rate for the laboratory test was 4.1 percent and the mortality rate was 0.7 percent. Injuries in the field and laboratory tests were localized minor hemorrhages or red, irritated areas. The suction- dredge system appears to be a safe option to collect larval lamprey from sediment and will be a useful addition to lamprey assessment and salvage tools.

Washington↗

Wind River subbasin restoration annual report of USGS activities January 2017 through December 2017

We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTISs) to investigate life-histories, populations, and efficacy of habitat restoration actions for wild Steelhead Oncorhynchus mykiss in the Wind River subbasin, WA. No hatchery Steelhead have been planted in the Wind River subbasin since 1997, and hatchery adults are estimated to be less than one percent of adults in most years (pers comm. Thomas Buehrens, Washington Department of Fish and Wildlife). Numerous restoration actions have been implemented in the subbasin, including Hemlock Dam removal on Trout Creek in 2009. Data from our study, and companion work by Washington Department of Fish and Wildlife (WDFW), are contributing to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1), specifically the substrategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild Steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. Our headwaters parr PIT tagging, WDFW parr, smolt, and adult tagging and our instream PTISs are providing data movements and life histories of parr, smolt, and adult Steelhead. During summer 2017, we PIT-tagged age-0 and age-1 Steelhead parr in headwater areas of the Wind River subbasin to characterize population traits and investigate life-history diversity, including growth and pre-smolt downstream movement. Repeat sampling and smolt traps provide opportunities for recapture, and instream PTISs and Columbia River infrastructure provide opportunity for detection of PIT-tagged fish. Throughout the year, we maintained a series of instream PTISs to monitor movement of tagged Steelhead parr, smolts, and adults. This included adding the second array to our upper Wind River PITS, increasing solar capacity and adding improved power cables to some sites. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. These data are increasing our understanding of varied life histories of juvenile Steelhead; paired with other Steelhead population work in the subbasin we hope to begin to understand factors which may influence parr movements. Long-term monitoring of PIT-tagged fish over multiple years is providing information on contribution of various life-history strategies to smolt production and adult returns. Movements of PIT-tagged adult Steelhead were also recorded at instream PTISs. These data have allowed us to assess adult returns to tributary watersheds within the Wind River subbasin. Determination of adult use of tributary watersheds is providing data to contribute to evaluation of the efficacy of the removal of Hemlock Dam on Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek was removed in summer 2009. The dam had had contributed to hydrologic impairment of Trout Creek and had potential negative effects on Steelhead. The improved upper Wind River PTIS (better site characteristics and grid power) will allow estimates of subbasin adult escapement upstream of that site. Evaluating and planning restoration efforts are of interest to many managers and agencies to ensure efficient use of resources. The evaluation of various life-histories of Lower Columbia River Steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those we operate in the Wind River subbasin, will provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

Combining genetic, isotopic, and field data to better describe the influence of dams and diversions on Burbot Movement in the Wind River Drainage, Wyoming

Dams and water diversions fragment habitat, entrain fish, and alter fish movement. Many Burbot Lota lota populations are declining, with dams and water diversions thought to be a major threat. We used multiple methods to identify Burbot movement patterns and assess entrainment into an irrigation system in the Wind River, Wyoming. We assessed seasonal movement of Burbot with a mark–recapture (PIT tagging) study, natal origins of entrained fish with otolith microchemistry, and historic movement with genotyping by sequencing. We found limited evidence of entrainment in irrigation waters across all approaches. The mark–recapture study indicated that out‐migration from potential source populations could be influenced by flow regime but was generally low. Otolith and genomic results suggested the presence of a self‐sustaining population within the irrigation network. We conclude that emigration from natural tributary populations is not the current source of the majority of Burbot found in irrigation waters. Instead, reservoir and irrigation canal construction has created novel habitat in which Burbot have established a population. Using a multi‐scale approach increased our inferential abilities and mechanistic understanding of movement patterns between natural and managed systems.

Wyoming↗

Wind River subbasin restoration: U.S. Geological Survey annual report November 2012 through December 2013

Executive Summary The Wind River subbasin in southwest Washington State provides habitat for a population of wild Lower Columbia River steelhead Oncorhynchus mykiss . There have been no hatchery steelhead planted in the Wind River subbasin since 1994, and hatchery adults are estimated to be less than one percent of adults in any year (pers comm. Thomas Buehrens, Washington Department of Fish and Wilflife). We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTIS) to investigate life-histories, populations, and efficacy of habitat restoration actions for these steelhead. Data from our study, and companion work by Washington Department of Fish and Wildlife (WDFW), will contribute to Bonneville Power Administration&rsquo;s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring ( www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1 ), specifically the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to uncertainties research regarding differing life histories of a wild steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer 2013, we PIT-tagged parr steelhead in headwater areas of the Wind River subbasin to investigate variable life-histories, specifically to compare fate of those juvenile steelhead that move downstream prior to smolting with those that remain in their natal areas until smolting. A series of instream PTISs monitored movement of these fish. Detections at the instream PTISs showed trends of parr emigration during summer and fall, in addition to the expected movement of parr and smolts in spring. Long-term monitoring of PIT-tagged fish over multiple years will provide information on contribution of various life-history strategies to smolt production and adult returns, as well as helping to identify factors influencing parr movement. Movements of PIT-tagged adult steelhead were tracked with our instream PTISs. These data have provided information on timing of adult movements to various parts of the watershed, which is allowing us to assess adult returns to tributary watersheds within the Wind River subbasin. Determination of adult use of tributary watersheds has provided data that will contribute to evaluating the efficacy of the removal of Hemlock Dam from Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek was removed in summer 2009 and had contributed to hydrologic impairment of Trout Creek. Evaluating restoration efforts is of interest to many managers and agencies so that funding and time are allocated for best results. The evaluation of various life-histories of Lower Columbia River steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those we are building and operating in the Wind River subbasin, will provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

Wild Steelhead and introduced spring Chinook Salmon in the Wind River, Washington: Overlapping populations and interactions

We investigated interactions of introduced juvenile spring Chinook salmon Oncorhynchus tshawytscha with wild juvenile steelhead O. mykiss in the upper Wind River watershed (rkm 24.6 to rkm 43.8), Washington. Our objective was to determine if the presence of introduced spring Chinook salmon influenced populations of wild juvenile steelhead and if other biotic or abiotic factors influenced distribution and populations of these species. We snorkeled to assess distribution and abundance in one to six stream reaches per year during 2001 through 2007. Juvenile steelhead were found in each sampled reach each year, but juvenile Chinook salmon were not. The upstream extent of distribution of juvenile Chinook salmon varied from rkm 29.7 to 42.5. Our analyses suggest that juvenile Chinook salmon distribution was much influenced by flow during the spawning season. Low flow appeared to limit access of escaped adult Chinook salmon to upper stream reaches. Abundance of juvenile Chinook salmon was also influenced by base flow during the previous year, with base flow occurring post spawn in late August or early September. There were no relationships between juvenile Chinook salmon abundance and number of Chinook salmon spawners, magnitude of winter flow that might scour redds, or abundance of juvenile steelhead. Abundance of age-0 steelhead was influenced primarily by the number of steelhead spawners the previous year, and abundance of age-1 steelhead was influenced primarily by abundance of age-0 steelhead the previous year. Juvenile steelhead abundance did not show a relationship with base or peak flows, nor with number of escaped Chinook salmon adults during the previous year. We did not detect a negative influence of the relatively low abundance of progeny of escaped Chinook salmon on juvenile steelhead abundance. This low abundance of juvenile Chinook salmon was persistent throughout our study and is likely a result of hatchery management and habitat conditions. Should one or both change in the future, the potential for negative interactions with wild steelhead could change.

Washington↗

Wind River Watershed Restoration: Annual Report April 2005 - March 2006

This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during the period April 2005 through March 2006 under Bonneville Power Administration (BPA) contract 22095. During this period, we collected temperature, flow, and habitat data to characterize habitat condition and variation within and among tributaries and mainstem sections in the Wind River subbasin. We also conducted electrofishing and snorkeling surveys to determine juvenile salmonid populations within select study areas throughout the subbasin. Portions of this work were completed with additional funding from U.S. Fish and Wildlife Service (USFWS) and the Lower Columbia Fish Enhancement Group (LCFEG).

Washington↗