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Research about Upper Klamath Lake

Source-linked reports with geographic coverage including Upper Klamath Lake.

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A metabolism-based whole lake eutrophication model to estimate the magnitude and time scales of the effects of restoration in Upper Klamath Lake, south-central Oregon

A whole lake eutrophication (WLE) model approach for phosphorus and cyanobacterial biomass in Upper Klamath Lake, south-central Oregon, is presented here. The model is a successor to a previous model developed to inform a Total Maximum Daily Load (TMDL) for phosphorus in the lake, but is based on net primary production (NPP), which can be calculated from dissolved oxygen, rather than scaling up a small-scale description of cyanobacterial growth and respiration rates. This phase 3 WLE model is a refinement of the proof-of-concept developed in phase 2, which was the first attempt to use NPP to simulate cyanobacteria in the TMDL model. The calibration of the calculated NPP WLE model was successful, with performance metrics indicating a good fit to calibration data, and the calculated NPP WLE model was able to simulate mid-season bloom decreases, a feature that previous models could not reproduce. In order to use the model to simulate future scenarios based on phosphorus load reduction, a multivariate regression model was created to simulate NPP as a function of the model state variables (phosphorus and chlorophyll a ) and measured meteorological and temperature model inputs. The NPP time series was split into a low- and high-frequency component using wavelet analysis, and regression models were fit to the components separately, with moderate success. The regression models for NPP were incorporated in the WLE model, referred to as the “scenario” WLE (SWLE), and the fit statistics for phosphorus during the calibration period were mostly unchanged. The fit statistics for chlorophyll a , however, were degraded. These statistics are still an improvement over prior models, and indicate that the SWLE is appropriate for long-term predictions even though it misses some of the seasonal variations in chlorophyll a . The complete whole lake SWLE model, with multivariate regression to predict NPP, was used to make long-term simulations of the response to 10-, 20-, and 40-percent reductions in tributary nutrient loads. The long-term mean water column concentration of total phosphorus was reduced by 9, 18, and 36 percent, respectively, in response to these load reductions. The long-term water column chlorophyll a concentration was reduced by 4, 13, and 44 percent, respectively. The adjustment to a new equilibrium between the water column and sediments occurred over about 30 years.

Oregon

Status and trends of adult Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) sucker populations in Upper Klamath Lake, Oregon, 2017

Executive Summary Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers (LRS; Deltistes luxatus ) and shortnose suckers (SNS; Chasmistes brevirostris ) have been captured and tagged with passive integrated transponder (PIT) tags during their spawning migrations in each year since 1995. In addition, beginning in 2005, individuals that had been previously PIT-tagged were re-encountered on remote underwater antennas deployed throughout sucker spawning areas. Captures and remote encounters during the spawning season in spring 2016 were incorporated into capture-recapture analyses of population dynamics. Cormack-Jolly-Seber (CJS) open population capture-recapture models were used to estimate annual survival probabilities, and a reverse-time analog of the CJS model was used to estimate recruitment of new individuals into the spawning populations. In addition, data on the size composition of captured fish were examined to provide corroborating evidence of recruitment. Model estimates of survival and recruitment were used to derive estimates of changes in population size over time and to determine the status of the populations through 2015. Separate analyses were done for each species and also for each subpopulation of LRS. Shortnose suckers and one subpopulation of LRS migrate into tributary rivers to spawn, whereas the other LRS subpopulation spawns at groundwater upwelling areas along the eastern shoreline of the lake. Capture-recapture analyses indicated that with a few exceptions, the survival of males and females in both Lost River sucker subpopulations was high (greater than 0.88) from 1999 to 2015. Survival was notably lower for males from the river in 2000, 2006, and 2012, and for the shoreline areas in 2002. From 2001 to 2015, the abundance of males in the lakeshore spawning subpopulation decreased by at least 64 percent and the abundance of females decreased by at least 56 percent. Capture-recapture models suggested that the abundance of both sexes in the river spawning subpopulation of LRS had increased substantially since 2006; increases were mostly due to large estimated recruitment events in 2006 and 2008. We know that the estimates in 2006 are substantially biased in favor of recruitment because of a sampling issue. We are skeptical of the magnitude of recruitment indicated by the 2008 estimates as well because (1) few small individuals that would indicate the presence of new recruits were captured in that year, and (2) recapture probabilities in recruitment models based on just physical recaptures of fish were lower than desired for robust inferences from capture-recapture models. If we assume instead that little or no recruitment occurred for this subpopulation, the abundance of both sexes in the river spawning subpopulation likely has decreased at rates similar to the rates for the lakeshore spawning subpopulation from 2002 to 2015. Shortnose suckers experienced lower and more variable annual survival than either LRS subpopulation. Annual survival of both sexes was relatively low in 2003, 2004, 2010, and 2012. In addition, female survival was low in 1999 and 2000 while male survival was low in 2002. Survival estimate precision in early years of the study; however, are poor. Capture-recapture models and size composition data indicate that recruitment of new individuals into the SNS spawning population was trivial from 2001 to 2005. Models indicate that more than 10 percent of the population was new recruits in a number of more recent years. As a result, capture-recapture modeling suggests that the abundance of adult spawning SNS was relatively stable from 2006 to 2010. We are skeptical of the estimated recruitment in 2006 because of the known sampling issue. We also are skeptical of the estimated recruitment in other recent years because few small individuals that would indicate the presence of new recruits were captured in any of those years, and recapture probabilities in recruitment models were low. The best-case scenario for SNS, based on capture-recapture recruitment modeling, indicates that the abundance of males in the spawning population decreased by 78 percent and the abundance of females decreased by 77 percent from 2001 to 2015. Decreases in abundance for both sexes are likely greater than these estimates indicate. Despite relatively high survival in most years, we conclude that both species have experienced substantial decreases in the abundance of spawning adults because losses from mortality have not been balanced by recruitment of new individuals. Although capture-recapture data indicate substantial recruitment of new individuals into the spawning populations for SNS and river spawning LRS in some years, size data do not corroborate these estimates. As a result, the status of the endangered sucker populations in Upper Klamath Lake remains distressed, especially for SNS. Our monitoring program provides a robust platform for estimating vital population parameters, evaluating the status of the populations, and assessing the effectiveness of conservation and recovery efforts.

Oregon

Health and condition of endangered young-of-the-year Lost River and Shortnose suckers relative to water quality in Upper Klamath Lake, Oregon, 2014–2015

Most mortality of endangered Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) suckers in Upper Klamath Lake, Oregon, occurs within the first year of life. Juvenile suckers in Clear Lake Reservoir, California, survive longer and may even recruit to the spawning populations. In a previous (2013–2014) study, the health and condition of juvenile suckers and the dynamics of water quality between Upper Klamath Lake and Clear Lake Reservoir were compared. That study found that apparent signs of stress or exposure to irritants, such as peribiliary cuffing in liver tissue and mild inflammation and necrosis in gill tissues, were present in suckers from both lakes and were unlikely to be clues to the cause of differential mortality between lakes. Seasonal trends in energy storage as glycogen and triglycerides were also similar between lakes, indicating prey limitation was not a likely factor in differential mortality. To better understand the relationship between juvenile sucker health and water quality, we examined suckers collected in 2014–2015 from Upper Klamath Lake, where water quality can be dynamic and, at times, extreme. While there were notable differences in water quality and fish health between years, we were not able to identify any specific water-quality-related causes for differential fish condition. Water quality was generally better in 2014 than in 2015. When considered together afflictions and abnormalities generally indicated healthier suckers in 2014 than 2015. Low dissolved-oxygen events (< 4 milligrams per liter) were less frequent and occurred earlier; high pH events (≥ 9.5) were less frequent and shorter in duration; large diel fluctuations in pH (≥ 1.4) were less frequent; water temperatures were warmer, particularly in July and September; and concentrations of microcystin in both large and small fractions of samples were lower in 2014 than in 2015. Total and therefore also un-ionized ammonia were low in 2014–2015 relative to concentrations known to affect suckers. Petechial hemorrhages of the skin, attached Lernaea spp. and eosinophilic hyaline droplets in the kidney tubules were less prevalent in 2014 than in 2015; however, hyperplastic and hypertrophic gill tissue and trichodinids on the gills were observed more frequently in 2014. There were more suckers with normal liver color and texture in 2014 than in 2015. The prevalence of suckers with liver inflammation was greater in 2014 and only observed in suckers collected after August 5, whereas liver inflammation occurred intermittently in 2015. Liver glycogen among suckers decreased in late-August 2014 and increased from early August to mid-September 2015. Lost River suckers had greater whole-body triglyceride content but a larger proportion with an absence of visceral fat observed in 2014 than in 2015. In contrast, shortnose suckers were similar between years in regard to both whole-body triglyceride and visceral fat. Black-spot-forming parasites (trematode metacercariae) were observed in a higher prevalence on shortnose suckers but not Lost River suckers in 2014 than in 2015. Opercular deformities were less prevalent in both species in 2014 than in 2015. Neither gross nor histological examination revealed a high prevalence of abnormalities in suckers that clearly indicate a primary mechanism for juvenile mortality in Upper Klamath Lake. Histological abnormalities were almost always focal and minimal or mild except where associated with parasites. Mild to severe focal abnormalities associated with Lernaea sp. attachment sites and encysted digenean (trematode) metacercariae are unlikely to be associated with mortality. Severe and diffuse inflammation and hyperplasia of the gills associated with Ichthyobodo sp. on one Lost River sucker, may indicate a potential cause of mortality. High mortality may have primarily occurred outside our study period (for example, in spring or over winter), or was caused by a factor that could not be detected with our methods (for example, predation). Alternatively, abnormalities in a small percentage of passively captured suckers in Upper Klamath Lake may indicate health-related issues that were more prevalent in populations than in our samples. Temporary decreases in liver glycogen stores may also indicate periods of stress, which may eventually lead to mortality of young suckers.

Oregon

Status and trends of adult Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) sucker populations in Upper Klamath Lake, Oregon, 2015

Executive Summary Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers (LRS; Deltistes luxatus ) and shortnose suckers (SNS; Chasmistes brevirostris ) have been captured and tagged with passive integrated transponder (PIT) tags during their spawning migrations in each year since 1995. In addition, beginning in 2005, individuals that had been previously PIT-tagged were re-encountered on remote underwater antennas deployed throughout sucker spawning areas. Captures and remote encounters during the spawning season in spring 2015 were incorporated into capture-recapture analyses of population dynamics. Cormack-Jolly-Seber (CJS) open population capture-recapture models were used to estimate annual survival probabilities, and a reverse-time analog of the CJS model was used to estimate recruitment of new individuals into the spawning populations. In addition, data on the size composition of captured fish were examined to provide corroborating evidence of recruitment. Separate analyses were done for each species and also for each subpopulation of LRS. Shortnose suckers and one subpopulation of LRS migrate into tributary rivers to spawn, whereas the other LRS subpopulation spawns at groundwater upwelling areas along the eastern shoreline of the lake. Characteristics of the spawning migrations in 2015, such as the effects of temperature on the timing of the migrations, were similar to past years. Capture-recapture analyses for the LRS subpopulation that spawns at the shoreline areas included encounter histories for 13,617 individuals, and analyses for the subpopulation that spawns in the rivers included 39,321 encounter histories. With a few exceptions, the survival of males and females in both subpopulations was high (greater than or equal to 0.86) between 1999 and 2013. Survival was notably lower for males from the rivers in 2000, 2006, and 2012. Survival probabilities were lower for males from the shoreline areas in 2002. Between 2001 and 2014, the abundance of males in the lakeshore spawning subpopulation decreased by at least 59 percent and the abundance of females decreased by at least 53 percent. By combining information from capture-recapture models and size composition data, we concluded that the abundance of both sexes in the river spawning subpopulation of LRS likely has decreased at rates similar to the rates for the lakeshore spawning subpopulation between 2002 and 2014. Capture-recapture analyses for SNS included encounter histories for 20,981 individuals. Most annual survival estimates between 2005 and 2009 were high (greater than 0.88), but both sexes of SNS experienced lower and more variable survival in 2001–04 and 2010–13. The best-case scenario for SNS, based on capture-recapture recruitment modeling, indicates that the abundance of males in the spawning population decreased by 77 percent and the abundance of females decreased by 74 percent between 2001 and 2014. Decreases in abundance for both sexes likely are greater than these estimates indicate. Despite relatively high survival in most years, we conclude that both species have experienced substantial decreases in the abundance of spawning adults because losses from mortality have not been balanced by recruitment of new individuals. The status of the endangered sucker populations in Upper Klamath Lake remains worrisome, especially for SNS.

Oregon

Using high-throughput DNA sequencing, genetic fingerprinting, and quantitative PCR as tools for monitoring bloom-forming and toxigenic cyanobacteria in Upper Klamath Lake, Oregon, 2013 and 2014

Monitoring the community structure and metabolic activities of cyanobacterial blooms in Upper Klamath Lake, Oregon, is critical to lake management because these blooms degrade water quality and produce toxic microcystins that are harmful to humans, domestic animals, and wildlife. Genetic tools, such as DNA fingerprinting by terminal restriction fragment length polymorphism (T-RFLP) analysis, high-throughput DNA sequencing (HTS), and real-time, quantitative polymerase chain reaction (qPCR), provide more sensitive and rapid assessments of bloom ecology than traditional techniques. The objectives of this study were (1) to characterize the microbial community at one site in Upper Klamath Lake and determine changes in the cyanobacterial community through time using T-RFLP and HTS in comparison with traditional light microscopy; (2) to determine relative abundances and changes in abundance over time of toxigenic Microcystis using qPCR; and (3) to determine relative abundances and changes in abundance over time of Aphanizomenon , Microcystis , and total cyanobacteria using qPCR. T-RFLP analysis of total cyanobacteria showed a dominance of only one or two distinct genotypes in samples from 2013, but results of HTS in 2013 and 2014 showed more variations in the bloom cycle that fit with the previous understanding of bloom dynamics in Upper Klamath Lake and indicated that potentially toxigenic Microcystis was more prevalent in 2014 than in years prior. The qPCR-estimated copy numbers of all target genes were higher in 2014 than in 2013, when microcystin concentrations also were higher. Total Microcystis density was shown with qPCR to be a better predictor of late-season increases in microcystin concentrations than the relative proportions of potentially toxigenic cells. In addition, qPCR targeting Aphanizomenon at one site in Upper Klamath Lake indicated a moderate bloom of this species (corresponding to chlorophyll a concentrations between approximately 75 and 200 micrograms per liter) from mid-June to mid-August, 2014. After August 18, the Aphanizomenon bloom was overtaken by Microcystis late in the season as microcystin concentrations peaked. Overall, results of this study showed how DNA-based, genetic methods may provide rapid and sensitive diagnoses for the presence of toxigenic cyanobacteria and that they are useful for general monitoring or ecological studies and identification of cyanobacterial community members in complex aquatic habitats. These same methods can also be used to simultaneously address spatial (horizontal and vertical) and temporal variation and under different conditions. Additionally, with some modifications, the same techniques can be applied to different sample types, including water, sediment, and tissue.

Oregon

Evaluating external nutrient and suspended-sediment loads to Upper Klamath Lake, Oregon, using surrogate regressions with real-time turbidity and acoustic backscatter data

Executive Summary Suspended-sediment and total phosphorus loads were computed for two sites in the Upper Klamath Basin on the Wood and Williamson Rivers, the two main tributaries to Upper Klamath Lake. High temporal resolution turbidity and acoustic backscatter data were used to develop surrogate regression models to compute instantaneous concentrations and loads on these rivers. Regression models for the Williamson River site showed strong correlations of turbidity with total phosphorus and suspended-sediment concentrations (adjusted coefficients of determination [Adj R 2 ]=0.73 and 0.95, respectively). Regression models for the Wood River site had relatively poor, although statistically significant, relations of turbidity with total phosphorus, and turbidity and acoustic backscatter with suspended sediment concentration, with high prediction uncertainty. Total phosphorus loads for the partial 2014 water year (excluding October and November 2013) were 39 and 28 metric tons for the Williamson and Wood Rivers, respectively. These values are within the low range of phosphorus loads computed for these rivers from prior studies using water-quality data collected by the Klamath Tribes. The 2014 partial year total phosphorus loads on the Williamson and Wood Rivers are assumed to be biased low because of the absence of data from the first 2 months of water year 2014, and the drought conditions that were prevalent during that water year. Therefore, total phosphorus and suspended-sediment loads in this report should be considered as representative of a low-water year for the two study sites. Comparing loads from the Williamson and Wood River monitoring sites for November 2013–September 2014 shows that the Williamson and Sprague Rivers combined, as measured at the Williamson River site, contributed substantially more suspended sediment to Upper Klamath Lake than the Wood River, with 4,360 and 1,450 metric tons measured, respectively. Surrogate techniques have proven useful at the two study sites, particularly in using turbidity to compute suspended-sediment concentrations in the Williamson River. This proof-of-concept effort for computing total phosphorus concentrations using turbidity at the Williamson and Wood River sites also has shown that with additional samples over a wide range of flow regimes, high-temporal-resolution total phosphorus loads can be estimated on a daily, monthly, and annual basis, along with uncertainties for total phosphorus and suspended-sediment concentrations computed using regression models. Sediment-corrected backscatter at the Wood River has potential for estimating suspended-sediment loads from the Wood River Valley as well, with additional analysis of the variable streamflow measured at that site. Suspended-sediment and total phosphorus loads with a high level of temporal resolution will be useful to water managers, restoration practitioners, and scientists in the Upper Klamath Basin working toward the common goal of decreasing nutrient and sediment loads in Upper Klamath Lake.

Oregon

Benthic processes affecting contaminant transport in Upper Klamath Lake, Oregon

Executive Summary Multiple sampling trips during calendar years 2013 through 2015 were coordinated to provide measurements of interdependent benthic processes that potentially affect contaminant transport in Upper Klamath Lake (UKL), Oregon. The measurements were motivated by recognition that such internal processes (for example, solute benthic flux, bioturbation and solute efflux by benthic invertebrates, and physical groundwater-surface water interactions) were not integrated into existing management models for UKL. Up until 2013, all of the benthic-flux studies generally had been limited spatially to a number of sites in the northern part of UKL and limited temporally to 2–3 samplings per year. All of the benthic invertebrate studies also had been limited to the northern part of the lake; however, intensive temporal (weekly) studies had previously been completed independent of benthic-flux studies. Therefore, knowledge of both the spatial and temporal variability in benthic flux and benthic invertebrate distributions for the entire lake was lacking. To address these limitations, we completed a lakewide spatial study during 2013 and a coordinated temporal study with weekly sampling of benthic flux and benthic invertebrates during 2014. Field design of the spatially focused study in 2013 involved 21 sites sampled three times as the summer cyanobacterial bloom developed (that is, May 23 , June 13 , and July 3, 2013). Results of the 27-week, temporally focused study of one site in 2014 were summarized and partitioned into three periods (referred to herein as pre-bloom, bloom and post-bloom periods), each period involving 9 weeks of profiler deployments, water column and benthic sampling. Partitioning of the pre-bloom, bloom, and post-bloom periods were based on water-column chlorophyll concentrations and involved the following date intervals, respectively: April 15 through June 10 , June 17 through August 13 , and August 20 through October 16, 2014. To examine dissolved-solute (0.2-micrometer [μm] filtered) benthic flux, sets of nonmetallic pore-water profilers (U.S. Patent 8,051,727 B1) were deployed. In 2013, the deployment of profilers at 21 UKL sites occurred at the beginning of the annual cyanobacterial bloom of Aphanizomenon flos–aquae (AFA), in the middle of the bloom period, and at the peak of the bloom. Coordinated benthic invertebrate collections also were made. Based on results from 2013, weekly deployments of profilers and collection of benthic invertebrate samples from late spring to early autumn were used to estimate temporal trends in solute flux and benthic invertebrate densities. Estimates of nutrient efflux by benthic invertebrates were determined in the spring and autumn from 2011 through 2013 and three times (spring, summer, and autumn) in 2015. This work extends UKL studies that began in 2006 to quantify the importance of benthic solute sources in the lake. In 2015, piezometers and thermistor sets were deployed to quantify potential groundwater exchange with the lake water column. Analysis of the 2013 soluble reactive phosphorus (SRP) benthic flux indicated no effect of location (lake region), habitat, or sampling period, and the average lakewide flux values were consistent with earlier studies that had been confined to the northern region of UKL and adjacent wetlands. The 2014 study therefore focused on estimating temporal trends at a site within Ball Bay. During both 2013 and 2014 field studies, fluxes of macronutrients (soluble reactive phosphorus (SRP) and ammonia) and micronutrients (iron [Fe] and manganese [Mn]) were consistently positive and increased prior to the initial AFA bloom, varied or lagged with water-column chlorophyll during the summer bloom period, then decreased after the cyanobacterial blooms, only to rebound toward pre-bloom conditions in the final weeks of sampling. These four solutes exhibited benthic loads greater than maximum riverine loads estimated during the spring and early summers of 2013 and 2014. However, consistently detectable concentrations for all four solutes provide no evidence that they consistently serve as the limiting nutrient for primary production in the lake. In contrast to the four solutes (SRP, ammonia, Fe, and Mn), benthic fluxes of dissolved arsenic (As) were both negative and positive (that is, the lakebed currently serves as both a source and a sink for dissolved As, depending on season). In a further contrast with SRP, ammonia, dissolved Fe, and Mn, dissolved-As riverine loads to UKL were of similar magnitude to benthic loads. A negative relationship between dissolved-As flux and water-column As over the 2014 temporal study provides a potential advantage for the management of water-quality in contrast to solutes, like SRP or ammonia, with consistently positive flux. The mean total benthic invertebrate density during 2013 was 12,610 individuals per square meter (n=63). Although benthic invertebrate density did not change over the study period, it was higher in littoral habitats than open-lake or trench habitats and higher in the northern region compared to the central or southern regions of UKL. Mean total benthic invertebrate density during 2014 was 19,726 individuals m −2 (n=27). Density during the pre-bloom and bloom periods of April 15 to August 13, 2014 (the first two thirds of the 2014 sampling period), were similar to 2013. However, benthic invertebrate density more than doubled during the latter one-third of the study, that is, the post-bloom period between August 20 to October 16, 2014. Oligochaeta, Chironomidae and Hirudinea represented well over 90 percent of the benthic fauna; Oligochaeta were twice as abundant as Chironomidae or Hirudinea, the latter two of which were similar in density. Benthic invertebrates may enhance dissolved-nutrient (or toxicant) transport across the sediment-water interface by (1) modifying diffusion-layer thicknesses and permeability through bioturbation, (2) enhancing advective flow across the interface through bioirrigation, and (3) excreting or expelling dissolved or particulate solutes directly into the overlying water column (Boudreau and Jorgensen, 2001). We evaluated SRP efflux via excretion for approximately 15 different major taxa in UKL. Once these measures were scaled, it was evident that benthic invertebrates potentially contribute approximately 1.5 times the amount of SRP to the water column of Upper Klamath Lake as diffusive SRP flux alone, measured in profiler deployments. Sets of piezometers and temperature loggers were deployed in UKL to obtain estimates of vertical advective solute flux. The pressure transducer installations, within the piezometers, did not perform as designed, rendering the head gradient data unreliable. However, in terms of future research, this field work did demonstrate the feasibility of collecting vertical gradient data with piezometer deployments. Advective flux estimates herein are based solely on heat-flow modeling based on temperature data from four lake sites, without use of transducer data. Given the magnitudes (both positive or negative) of the heat-transfer fluxes for SRP, relative to diffusive-flux and macroinvertebrate efflux measurements (all positive but spanning the same orders of magnitude), further examination of solute advective flux is recommended as a potential transport process to integrate into existing water-quality (for example, Total Maximum Daily Load [TMDL]) models. As a complement to the biogeochemical focus of this study, initial analyses of suspended-particle (floc) characteristics and settling velocities from the water column were derived near the surface and lakebed at two UKL sites. To better understand changing particle characteristics during the AFA-bloom period, suspended particles were examined in 2015 using a LabSFLOC (LF), which is a Laboratory Spectral Flocculation Characteristics version of an In-Situ Settling Velocity instrument (INSSEV-LF). Particle characteristics and settling velocities were analyzed from the water column near the surface (sample dp_10 ) and lakebed (sample dp_90 ) at two lake sites (open-lake site ML and littoral site LS01). The term “floc” refers herein to suspended particles that may aggregate or disaggregate to change in size, composition, and settling velocity. During pre-bloom (May) conditions, where maximum suspended particulate matter concentration (SPMC) was 140 milligrams per liter (mg L −1 ) was now observed at site LS01 in close proximity to the bed, where D mean peaked at 305 μm, and the corresponding Ws mean was 3.9 millimeters per second (mm s −1 ). The high near-bed SPMC (828 mg L −1 ) experienced during post-bloom October 2015 at LS01 formed a benthic nepheloid layer (BNL) above the lake’s bed. Numerous low density, fast settling macrofloc-sized organic aggregates (D >160 μm) were observed (some up to 1 mm in size) near bed at LS01 both during the bloom and post-bloom conditions; many of these flocs displayed fibrous organic structures. In terms of mass settling fluxes, the post-bloom BNL produced a total MSF of 4,139 milligrams per square meter per second (mg m −2 s −1 ) (92.1 percent of MSF credited to the macrofloc-sized organic aggregates/cyanobacterial colonies); that was nearly three times the corresponding near-bed settling flux observed during the July 2015 bloom and 360 times greater than the pre-bloom conditions from May 2015 (98.8 percent and 14 percent of MSF credited to the macrofloc-sized fractions for those respective months). Such changes in the near-bed settling flux demonstrate the highly significant seasonal effects that the AFA bloom has on the floc depositional fluxes in UKL and highlights the importance of seasonal monitoring of these conditions in order to correctly parameterize the wide range in depositional characteristics and floc properties measured throughout UKL. Collectively, floc populations observed within UKL demonstrated a wide range in settling velocity (Ws) for a given particle size, D. Similarly, a given settling velocity was not associated with a specific particle size. This variability in particle characteristics and properties indicates the influence of varying floc effective density and its effect on mass and mass settling fluxes (MSF). The use of instruments, such as the INSSEV-LF, enables measuring the variability of settling velocity and its relation to particle density and size.

Oregon

Juvenile sucker cohort tracking data summary and assessment of monitoring program, 2015

Populations of federally endangered Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Upper Klamath Lake, Oregon, are experiencing long-term declines in abundance. Upper Klamath Lake populations are decreasing because adult mortality, which is relatively low, is not being balanced by recruitment of young adult suckers into known adult spawning aggregations. Previous sampling for juvenile suckers indicated that most juvenile sucker mortality in Upper Klamath Lake likely occurs within the first year of life. The importance of juvenile sucker mortality to the dynamics of Clear Lake Reservoir populations is less clear, and factors other than juvenile mortality (such as access to spawning habitat) play a substantial role. For example, production of age-0 juvenile suckers, as determined by fin ray annuli and fin development, has not been detected since 2013 in Clear Lake Reservoir, whereas it is detected annually in Upper Klamath Lake. We initiated a long-term juvenile sucker monitoring program in 2015 designed to track cohorts through seasons and among years in both Upper Klamath Lake and Clear Lake Reservoir. Specifically, our goals are to track annual variability in age-0 sucker production, juvenile sucker survival, growth, and condition. In this first year of the monitoring program, we assessed assumptions that sampled fish were representative of populations of suckers in each lake. The size, age, and species composition of suckers were similar between randomly determined sites and fixed sites in each lake. We captured a wide size and age range of suckers using similar gear, indicating our gear did not exclude older and larger fish. We identified improvements that could be made in the monitoring program including increasing the number of randomly determined sample sites in both lakes, evaluation of gear-size selectivity, and validation of aging methods for juvenile Lost River and shortnose suckers. Differing age composition of juvenile suckers between lakes in our 2015 catches and as reported in previous studies indicate that juvenile suckers are produced in relatively larger numbers each year in Upper Klamath Lake than in Clear Lake Reservoir. Most (96.6 percent) of suckers captured in Upper Klamath Lake in 2015 were age-0, whereas age-0 or age-1 suckers were not captured in Clear Lake Reservoir. Despite ample effort, age-0 suckers have not been captured in Clear Lake Reservoir since 2013. Estimated ages of suckers captured in 2015 in Clear Lake Reservoir ranged from 2 to 6 years. Low flow during spawning seasons in the only known spawning tributary to Clear Lake Reservoir (Willow Creek) appears to explain the lack of age-0 sucker production in recent years. Juvenile sucker mortality is relatively higher in Upper Klamath Lake than in Clear Lake Reservoir. We compared data collected in 2015 to previously published catch rates to produce an index of annual juvenile sucker survival for these species. We calculated indices of annual apparent survival of juvenile sucker ages 0&ndash;5 years old in Clear Lake Reservoir to be between 0.37 (&plusmn;0.86 standard error [SE]) and 0.44 (&plusmn;0.84 SE). This is the first time indices of annual apparent survival for Lost River and shortnose suckers have been calculated. This estimate has the limitation of being non-species specific because not all individuals were identified to species in previous years, and suckers that were identified included both taxa. In contrast, catch rates decreased by 89 percent for juvenile Lost River suckers and decreased 50 percent for juvenile shortnose suckers in Upper Klamath Lake between August and September 2015. Very low catch rates of age-1 and older suckers in Upper Klamath Lake indicate that annual juvenile sucker survival rates are near zero. Condition of suckers was assessed in 2015 based on age-0 sucker growth rates in Upper Klamath Lake and the prevalence of externally observable afflictions on suckers from both lakes. Age-0 Lost River suckers grew an average (&plusmn; standard deviation [SD]) of 0.72 (&plusmn;0.01) millimeters [mm] standard length [SL] per day, and age-0 shortnose suckers grew an average of 0.57 (&plusmn;0.04) mm SL per day in 2015. This growth rate was similar to growth rates reported for these species in Upper Klamath Lake in previous years. Opercular deformities, skin hemorrhages, black-spot causing parasites, and Lernaea spp. parasitism were the most common afflictions observed on suckers. Observed afflictions were primarily on suckers from Upper Klamath Lake, with the exception of Lernaea spp., which occurred more frequently on suckers from Clear Lake Reservoir. Opercular deformities and black-spot causing parasites were each observed on 5 percent of age-0 suckers from Upper Klamath Lake. Petechial hemorrhaging of the skin was observed on 43 percent of age-0 Lost River suckers, 38 percent of age-0 suckers of undetermined taxa, and only 24 percent of age-0 shortnose suckers from Upper Klamath Lake. Petechial hemorrhaging of the skin was only observed on a single shortnose sucker from Clear Lake Reservoir. Within Upper Klamath Lake, the prevalence of these hemorrhages was exactly twice as high as was reported in 2014.

Oregon

Survival, movement, and health of hatchery-raised juvenile Lost River suckers within a mesocosm in Upper Klamath Lake, Oregon

The recovery of endangered Lost River suckers ( Deltistes luxatus ) in Upper Klamath Lake is limited by poor juvenile survival and failure to recruit into the adult population. Poor water quality, degradation of rearing habitat, and toxic levels of microcystin are hypothesized to contribute to low juvenile survival. Studies of wild juvenile suckers are limited in that capture rates are low and compromised individuals are rarely captured in passive nets. The goal of this study was to assess the use of a mesocosm for learning about juvenile survival, movement, and health. Hatchery-raised juvenile Lost River suckers were PIT (passive integrated transponder) tagged and monitored by three vertically stratified antennas. Fish locations within the mesocosm were recorded at least every 30 minutes and were assessed in relation to vertically stratified water-quality conditions. Vertical movement patterns were analyzed to identify the timing of mortality for each fish. Most mortality occurred from July 28 to August 16, 2014. Juvenile suckers spent daylight hours near the benthos and moved throughout the entire water column during dark hours. Diel movements were not in response to dissolved-oxygen concentrations, temperature, or pH. Furthermore, low dissolved-oxygen concentrations, high temperatures, high pH, high un-ionized ammonia, or high microcystin levels did not directly cause mortality, although indirect effects may have occurred. However, water-quality conditions known to be lethal to juvenile Lost River suckers did not occur during the study period. Histological assessment revealed severe gill hyperplasia and Ichthyobodo sp. infestations in most moribund fish. For these fish, Ichthyobodo sp. was likely the cause of mortality, although it is unclear if this parasite originated in the rearing facility because fish were not screened for this parasite prior to introduction. This study has demonstrated that we can effectively use a mesocosm equipped with antennas to learn about the timing of mortality, movement, and health of PIT-tagged hatchery-raised juvenile Lost River suckers.

Oregon

Transforming growth factor-β1 expression in endangered age-0 shortnose suckers ( Chasmistes brevirostris ) from Upper Klamath Lake, OR relative to histopathology, meristic, spatial, and temporal data

During July &ndash; September of 2008, 2009, and 2010 endangered age-0 juvenile shortnose suckers were sampled from Upper Klamath Lake, OR in a health evaluation that included the measurement of transforming growth factor &ndash; beta (TGF-&beta;) expression in spleen in combination with a histopathology assessment. This analysis was performed to determine if the expression of this immuno-regulator could be used as a component of a larger health evaluation intended to identify potential risk-factors that may help to explain why very few of these fish survive to age-1. Potential associations between TGF-&beta;1 expression, histopathological findings, meristic data as well as temporal and spatial data were evaluated using analysis-of-variance. In this analysis, the absence or presence of opercula deformity and hepatic cell necrosis were identified as significant factors in accounting for the variance in TGF-&beta;1 expression observed in age-0 shortnose suckers (n = 122, squared multiple R = 0.989). Location of sample collection and the absence or presence of anchor worms ( Lernaea spp.) were identified as significant cofactors. The actual mechanisms involved with these relationships have yet to be determined. The strength, however, of our findings support the concept of using TGF-&beta;1 expression as part of a broader fish health assessment and suggests the potential for using additional immunologic measures in future studies. Specifically, our results indicate that the measure of TGF-&beta;1 expression in age-0 shortnose sucker health assessments can facilitate the process of identifying disease risks that are associated with the documented lack of recruitment into the adult population.

Oregon

Status and trends of adult Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) sucker populations in Upper Klamath Lake, Oregon, 2014

Executive Summary Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) have been captured and tagged with passive integrated transponder (PIT) tags during their spawning migrations in each year since 1995. In addition, beginning in 2005, individuals that had been previously PIT-tagged were re-encountered on remote underwater antennas deployed throughout sucker spawning areas. Captures and remote encounters during the spawning season in spring 2014 were incorporated into capture-recapture analyses of population dynamics. Cormack-Jolly-Seber (CJS) open population capture-recapture models were used to estimate annual survival probabilities, and a reverse-time analog of the CJS model was used to estimate recruitment of new individuals into the spawning populations. In addition, data on the size composition of captured fish were examined to provide corroborating evidence of recruitment. Model estimates of survival and recruitment were used to derive estimates of changes in population size over time and to determine the status of the populations through 2013. Separate analyses were conducted for each species and also for each subpopulation of Lost River suckers (LRS). Shortnose suckers (SNS) and one subpopulation of LRS migrate into tributary rivers to spawn, whereas the other LRS subpopulation spawns at groundwater upwelling areas along the eastern shoreline of the lake. In 2014, we captured, tagged, and released 496 LRS at four lakeshore spawning areas and recaptured an additional 970 individuals that had been tagged in previous years. Across all four areas, the remote antennas detected 6,370 individual LRS during the spawning season. Spawning activity peaked in April and most individuals were encountered at Cinder Flats and Sucker Springs. In the Williamson River, we captured, tagged, and released 3,038 LRS and 267 SNS, and recaptured 762 LRS and 156 SNS that had been tagged in previous years. Remote PIT tag antennas in the traps at the weir on the Williamson River and remote antenna systems that spanned the river at three different locations on the Williamson and Sprague Rivers detected a total of 23,446 LRS and 6,259 SNS. Most LRS passed upstream in the first and second weeks of April when water temperatures were increasing and greater than 10 &deg;C. In contrast, upstream passage for SNS occurred in two pulses, one in early April and one in late April to early May, when water temperatures were increasing and near or greater than 12 &deg;C. Finally, an additional 375 LRS and 884 SNS were captured in trammel net sampling at pre-spawn staging areas in the northeastern part of the lake. Of these, 111 of the LRS and 390 of the SNS had been PIT-tagged in previous years. For LRS captured at the staging areas that had encounter histories that were informative about their spawning location, 79 percent of the fish were members of the subpopulation that spawns in the rivers. Capture-recapture analyses for the LRS subpopulation that spawns at the shoreline areas included encounter histories for more than 13,200 individuals, and analyses for the subpopulation that spawns in the rivers included more than 36,400 encounter histories. With a few exceptions, the survival of males and females in both subpopulations was high (greater than 0.88) between 1999 and 2012. Notably lower survival occurred for both sexes from the rivers in 2000, for males from the shoreline areas in 2002, and for males from the rivers in 2006 and 2012. Between 2001 and 2013, the abundance of males in the lakeshore spawning subpopulation decreased by at least 55 percent and the abundance of females decreased by at least 42 percent. Capture-recapture models suggested that the abundance of both sexes in the river spawning subpopulation of LRS had increased substantially since 2006; increases were mostly due to large estimated recruitment events in 2006 and 2008. We know that the estimates in 2006 are substantially biased in favor of recruitment because of a sampling issue. We are skeptical of the magnitude of recruitment indicated by the 2008 estimates as well because (1) few small individuals that would indicate the presence of new recruits were captured in that year, and (2) recapture probabilities in recruitment models based on just physical recaptures of fish were lower than desired for robust inferences from capture-recapture models. If we assume instead that little or no recruitment occurred for this subpopulation, the abundance of both sexes in the river spawning subpopulation likely has decreased at rates similar to the rates for the lakeshore spawning subpopulation between 2002 and 2013. Capture-recapture analyses for SNS included encounter histories for more than 19,200 individuals. Most annual survival estimates between 2001 and 2012 were high (greater than 0.80), but SNS experienced more years of low survival than either LRS subpopulation. Annual survival of both sexes was relatively low in 2004, 2010, and 2012. In addition, male survival was low in 2002. Capture-recapture models and size composition data indicate that recruitment of new individuals into the SNS spawning population was trivial between 2001 and 2005. Models indicate that more than 10 percent of the population was new recruits in a number of more recent years. As a result, capture-recapture modeling suggests that the abundance of adult spawning SNS was relatively stable between 2006 and 2010. We are skeptical of the estimated recruitment in 2006 because of the known sampling issue. We also are skeptical of the estimated recruitment in other recent years because few small individuals that would indicate the presence of new recruits were captured in any of those years, and recapture probabilities in recruitment models were low. The best-case scenario for SNS, based on capture-recapture recruitment modeling, indicates that the abundance of males in the spawning population decreased by 77 percent and the abundance of females decreased by 73 percent between 2001 and 2013. Decreases in abundance for both sexes likely are greater than these estimates indicate. Despite relatively high survival in most years, we conclude that both species have experienced substantial decreases in the abundance of spawning adults because losses from mortality have not been balanced by recruitment of new individuals. Although capture-recapture data indicate substantial recruitment of new individuals into the spawning populations for SNS and river spawning LRS in some years, size data do not corroborate these estimates. As a result, the status of the endangered sucker populations in Upper Klamath Lake remains worrisome, especially for shortnose suckers. Our monitoring program provides a robust platform for estimating vital population parameters, evaluating the status of the populations, and assessing the effectiveness of conservation and recovery efforts.

Oregon

Effects of lake surface elevation on shoreline-spawning Lost River Suckers

We analyzed remote detection data from PIT-tagged Lost River Suckers Deltistes luxatus at four shoreline spawning areas in Upper Klamath Lake, Oregon, to determine whether spawning of this endangered species was affected by low water levels. Our investigation was motivated by the observation that the surface elevation of the lake during the 2010 spawning season was the lowest in 38 years. Irrigation withdrawals in 2009 that were not replenished by subsequent winter-spring inflows caused a reduction in available shoreline spawning habitat in 2010. We compared metrics of skipped spawning, movement among spawning areas, and spawning duration across 8 years (2006-2013) that had contrasting spring water levels. Some aspects of sucker spawning were similar in all years, including few individuals straying from the shoreline areas to spawning locations in lake tributaries and consistent effects of increasing water temperatures on the accumulation of fish at the spawning areas. During the extreme low water year of 2010, 14% fewer female and 8% fewer male suckers joined the shoreline spawning aggregation than in the other years. Both males and females visited fewer spawning areas within Upper Klamath Lake in 2010 than in other years, and the median duration at spawning areas in 2010 was at least 36% shorter for females and 20% shorter for males relative to other years. Given the imperiled status of the species and the declining abundance of the population in Upper Klamath Lake, any reduction in spawning success and egg production could negatively impact recovery efforts. Our results indicate that lake surface elevations above 1,262.3-1,262.5 m would be unlikely to limit the number of spawning fish and overall egg production.

Oregon

Revision and proposed modification for a total maximum daily load model for Upper Klamath Lake, Oregon

This report presents Phase 2 of the review and development of the mass balance water-quality model, originally developed in 2001, that guided establishment of the phosphorus (P) total maximum daily load (TMDL) for Upper Klamath and Agency Lakes, Oregon. The purpose of Phase 2 was to incorporate a longer (19-year) set of external phosphorus loading data into the lake TMDL model than had originally been available, and to develop a proof-of-concept method for modeling algal mortality and the consequent decrease in chlorophyll a that had not been possible with the 2001 TMDL model formulation. Using the extended 1991&ndash;2010 external phosphorus loading dataset, the lake TMDL model was recalibrated following the same procedures outlined in the Phase 1 review. The version of the model selected for further development incorporated an updated sediment initial condition, a numerical solution method for the chlorophyll a model, changes to light and phosphorus factors limiting algal growth, and a new pH-model regression, which removed Julian day dependence in order to avoid discontinuities in pH at year boundaries. This updated lake TMDL model was recalibrated using the extended dataset in order to compare calibration parameters to those obtained from a calibration with the original 7.5-year dataset. The resulting algal settling velocity calibrated from the extended dataset was more than twice the value calibrated with the original dataset, and, because the calibrated values of algal settling velocity and recycle rate are related (more rapid settling required more rapid recycling), the recycling rate also was larger than that determined with the original dataset. These changes in calibration parameters highlight the uncertainty in critical rates in the Upper Klamath Lake TMDL model and argue for their direct measurement in future data collection to increase confidence in the model predictions.

Oregon

Rhynchelmis subgenus Sutroa Eisen new rank, with two new species from western North America (Annelida, Clitellata, Lumbriculidae)

The lumbriculid Rhynchelmis subgenus Sutroa Eisen, 1888 new rank is defined for a group of Nearctic species having multiple diverticula originating at the spermathecal ducts and eversible penial bulbs. Characters are confirmed in specimens of the type species, Rhynchelmis (Sutroa) rostrata (Eisen, 1888), collected from the type locality. Rhynchelmis (Sutroa) klamathensis Fend n. sp. is described from open water benthic habitats in Upper Klamath Lake, Oregon, USA. It resembles other R. (Sutroa) species in the paired spermathecal diverticula, the spermathecal and penial bulbs, the histological structure of the atria, the nonfunctional anterior male funnels, and the arrangement of blood vessels. Rhynchelmis klamathensis differs from all Nearctic Rhynchelmis in lacking a filiform proboscis. The combination of large body size, the elongate spermathecal ducts with paired and usually unbranched diverticula, the highly contorted atria, and the complex male pores with conical penes also distinguish typical R. klamathensis from other Rhynchelmis species. Smaller specimens with otherwise similar morphology, from the Sacramento River Delta, California, are also assigned to this species. Rhynchelmis (Sutroa) diespluviae Fend n. sp. is described from several stream sites, mostly in northern Idaho, USA. Rhynchelmis diespluviae differs from closely related species in morphology of the conical penes, and in the structure and anterolateral position of the paired spermathecae.

Oregon

Demographics and run timing of adult Lost River ( Deltistes luxatus ) and short nose ( Chasmistes brevirostris ) suckers in Upper Klamath Lake, Oregon, 2012

Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) have been captured and tagged with passive integrated transponder (PIT) tags during their spawning migrations in each year since 1995. In addition, beginning in 2005, individuals that had been previously PIT-tagged were re-encountered on remote underwater antennas deployed throughout sucker spawning areas. Captures and remote encounters during spring 2012 were used to describe the spawning migrations in that year and also were incorporated into capture-recapture analyses of population dynamics. Cormack-Jolly-Seber (CJS) open population capture-recapture models were used to estimate annual survival probabilities, and a reverse-time analog of the CJS model was used to estimate recruitment of new individuals into the spawning populations. In addition, data on the size composition of captured fish were examined to provide corroborating evidence of recruitment. Model estimates of survival and recruitment were used to derive estimates of changes in population size over time and to determine the status of the populations in 2011. Separate analyses were conducted for each species and also for each subpopulation of Lost River suckers (LRS). Shortnose suckers (SNS) and one subpopulation of LRS migrate into tributary rivers to spawn, whereas the other LRS subpopulation spawns at groundwater upwelling areas along the eastern shoreline of the lake. In 2012, we captured, tagged, and released 749 LRS at four lakeshore spawning areas and recaptured an additional 969 individuals that had been tagged in previous years. Across all four areas, the remote antennas detected 6,578 individual LRS during the spawning season. Spawning activity peaked in April and most individuals were encountered at Cinder Flats and Sucker Springs. In the Williamson River, we captured, tagged, and released 3,376 LRS and 299 SNS, and recaptured 551 LRS and 125 SNS that had been tagged in previous years. Remote PIT tag antennas in the traps at the weir on the Williamson River and remote antenna systems that spanned the river at four different locations on the Williamson and Sprague Rivers detected a total of 19,321 LRS and 6,124 SNS. Most LRS passed upstream between late April and mid-May when water temperatures were increasing and greater than 10 °C. In contrast, most upstream passage for SNS occurred in early and mid-May when water temperatures were increasing and near or greater than 12 °C. Finally, an additional 1,188 LRS and 1,665 SNS were captured in trammel net sampling at pre-spawn staging areas in the northeastern part of the lake. Of these, 291 of the LRS and 653 of the SNS had been PIT-tagged in previous years. For LRS captured at the staging areas that had encounter histories that were informative about their spawning location, over 90 percent of the fish were members of the subpopulation that spawns in the rivers. Capture-recapture analyses for the LRS subpopulation that spawns at the shoreline areas included encounter histories for more than 12,150 individuals, and analyses for the subpopulation that spawns in the rivers included more than 29,500 encounter histories. With a few exceptions, the survival of males and females in both subpopulations was high (greater than 0.9) between 1999 and 2010. Notably lower survival occurred for both sexes from the rivers in 2000, for both sexes from the shoreline areas in 2002, and for males from the rivers in 2006. Between 2001 and 2011, the abundance of males in the lakeshore spawning subpopulation decreased by 53–65 percent and the abundance of females decreased by 36–48 percent. Capture-recapture models suggested that the abundance of both sexes in the river spawning subpopulation of LRS had increased substantially since 2006; increases were due to large estimated recruitment events in 2006 and 2008. We know that the estimates in 2006 are substantially biased in favor of recruitment because of a sampling issue. We are skeptical of the magnitude of recruitment indicated by the 2008 estimates as well because (1) few small individuals that would indicate the presence of new recruits were captured in that year, and (2) recapture probabilities in recruitment models based on just physical recaptures were lower than desired for robust inferences from capture-recapture models. If we assume that little or no recruitment occurred in 2006 or 2008, the abundance of both sexes in the river spawning subpopulation likely has decreased at rates similar to the rates for the lakeshore spawning subpopulation between 2002 and 2011. Capture-recapture analyses for SNS included encounter histories for more than 17,700 individuals. Most annual survival estimates between 2001 and 2010 were high (greater than 0.8), but SNS experienced more years of low survival than either LRS subpopulation. Annual survival of both sexes was particularly low in 2001, 2004, and 2010. In addition, male survival was somewhat low in 2002. Capture-recapture models and size composition data indicate that recruitment of new individuals into the SNS spawning population was trivial between 2001 and 2005. Models indicate substantial recruitment of new individuals into the SNS spawning population in 2006, 2008, and 2009. As a result, capture-recapture modeling suggests that the abundance of adult spawning SNS was relatively stable between 2006 and 2010. We are skeptical of the estimated recruitment in 2006, 2008, and 2009 because few small individuals that would indicate the presence of new recruits were captured in any of those years, and recapture probabilities in recruitment models were low. The best-case scenario for SNS, based on capture-recapture recruitment modeling, indicates that the abundance of males in the spawning population decreased by 71 percent and the abundance of females decreased by 69 percent between 2001 and 2011. The worst-case scenario, which assumes no recruitment and seems more likely, suggests an 86 percent decrease for males and an 81 percent decrease for females. Despite relatively high survival in most years, we conclude that both species have experienced substantial declines in the abundance of spawning fish because losses from mortality have not been balanced by recruitment of new individuals. Although capture-recapture data indicate substantial recruitment of new individuals into the adult spawning populations for SNS and river spawning LRS in some years, size data do not corroborate these estimates. In fact, fork length data indicate that all populations are largely comprised of fish that were present in the late 1990s and early 2000s. As a result, the status of the endangered sucker populations in Upper Klamath Lake remains worrisome, and the situation is especially dire for shortnose suckers. Future investigations should explore the connections between sucker recruitment and survival and various environmental factors, such as water quality and disease. Our monitoring program provides a robust platform for estimating vital population parameters, evaluating the status of the populations, and assessing the effectiveness of conservation and recovery efforts.

Oregon

A new species of Helobdella (Hirudinida: Glossiphoniidae) from Oregon

Helobdella bowermani n. sp. is described from specimens collected in fine sediment of open water benthos of Upper Klamath Lake, Klamath County, Oregon. The new species has pale yellow/buff coloration with scattered chromatophore blotches throughout the dorsal surface, lateral extensions or papillae only on the a2 annulus, dorsal medial row of papillae with small papilla on a1 and larger papillae on a2 and a3, and a small oval scute (rarely triangular). Helobdella bowermani n. sp. is morphologically similar to Helobdella atli and Helobdella simplex. Molecular comparison of CO-I sequence data from H. bowermani n. sp. revealed differences of 10.6%–10.8% with Helobdella californica, differences of 12.2%–13.7% with H. atli, and differences of 12.7%–13.2% with H. simplex.

Oregon

Assessing movement and sources of mortality of juvenile catostomids using passive integrated transponder tags, Upper Klamath Lake, Oregon - Summary of 2012 effort

Executive Summary Survival of juvenile endangered Lost River and shortnose suckers is thought to limit recruitment into the adult populations and ultimately limit the recovery of these species in Upper Klamath Lake, Oregon. Although many hypotheses exist about the sources of mortality, the contribution of each speculated source of mortality has not been examined. To examine causes of mortality, validate estimated age to maturity, and examine movement patterns for juvenile suckers in Upper Klamath Lake, passive integrated transponder (PIT) tags and remote tag detection systems were used. Age-1 suckers were opportunistically tagged in 2009 and 2010 during another study on juvenile sucker distribution. After the distribution study concluded in 2010, USGS redirected sampling efforts to target age-1 suckers for tagging. Tags were redetected using an existing infrastructure of remote PIT tag readers and tag scanning surveys at American white pelican ( Pelecanus erythrorhynchos ), double-crested cormorant ( Phalacrocorax auritus ), and Forster&rsquo;s tern ( Sterna forsteri ) breeding and loafing areas. Individual fish histories are used to describe the distance, direction, and timing of juvenile sucker movement. Sucker PIT tag detections in the Sprague and Williamson Rivers in mid-summer and in autumn indicate tagged juvenile suckers use these tributaries outside of the known spring spawning season. PIT tags detected in bird habitats indicate predation by birds was a cause of mortality.

Oregon

Tagging age-1 Lost River and shortnose suckers with passive integrated transponders, Upper Klamath Lake, Oregon&ndash;Summary of 2009&ndash;11 effort

A passive integrated transponder (PIT) tagging study was initiated in 2009 for age-1 endangered Lost River and shortnose suckers in Upper Klamath Lake, Oregon, for the purpose of examining causes of mortality, validating estimated age to maturity, and examining movement patterns. This study, which was done opportunistically in 2009 and 2010, received funding in 2011 for a directed tagging effort. Tags were redetected using an existing infrastructure of remote PIT tag readers and tag scanning surveys at American white pelican and double-crested cormorant breeding and loafing areas. Individual fish histories are used to describe the distance, direction, and timing of age-1 sucker movement. Sucker PIT tag detections in the Sprague and Williamson rivers in mid-summer and in autumn indicate age-1 suckers use these tributaries outside of the known spring spawning season. PIT tags detected in bird habitats indicate predation by birds may have been a cause of mortality in 2009. Field conditions prevented scanning bird breeding and loafing areas in Upper Klamath Wildlife National Refuge for tags in 2011, however, limiting our ability to make inferences about bird predation in those years.

Oregon