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Research about San Diego, California

Source-linked reports with geographic coverage including San Diego, California.

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Response study of a tall San Diego, California building inferred from the M7.1 July 5, 2019 Ridgecrest, California earthquake motions

The shaking of a new 24-story tall building in San Diego, California, was recorded by its seismic monitoring array during the M7.1 Ridgecrest, California earthquake of July 5, 2019. The building is located ~340 km from the epicenter of the event. The building is a special moment framed (SMF) steel structure with reduced beam sections (RBS) and viscous damper systems (DS). Peak accelerations recorded by the array indicate 0.007 g at the basement level and 0.044 g at the roof level. Spectral analyses and system identification methods indicate coupled NS, EW, and torsinal fundamental modes at ~ 0.30 Hz frequency and critical damping percentages < 5%. For the EW and fundamental torsional modes, critical damping percentages are < 2.5%. At the low-level shaking, the computed largest average drift ratio is ~ 0.065%, less than 0.5% of the value considered to be the starting threshold of nonlinear behavior or damage.

California

Projecting climate dependent coastal flood risk with a hybrid statistical dynamical model

Numerical models for tides, storm surge, and wave runup have demonstrated ability to accurately define spatially varying flood surfaces. However these models are typically too computationally expensive to dynamically simulate the full parameter space of future oceanographic, atmospheric, and hydrologic conditions that will constructively compound in the nearshore to cause both extreme event and nuisance flooding during the 21st century. A surrogate modeling framework of waves, winds, and tides is developed in this study to efficiently predict spatially varying nearshore and estuarine water levels contingent on any combination of offshore forcing conditions. The surrogate models are coupled with a time-dependent stochastic climate emulator that provides efficient downscaling for hypothetical iterations of offshore conditions. Together, the hybrid statistical-dynamical framework can assess present day and future coastal flood risk, including the chronological characteristics of individual flood and wave-induced dune overtopping events and their changes into the future. The framework is demonstrated at Naval Base Coronado in San Diego, CA, utilizing the regional Coastal Storm Modeling System (CoSMoS; composed of Delft3D and XBeach) as the dynamic simulator and Gaussian process regression as the surrogate modeling tool. Validation of the framework uses both in-situ tide gauge observations within San Diego Bay, and a nearshore cross-shore array deployment of pressure sensors in the open beach surf zone. The framework reveals the relative influence of large-scale climate variability on future coastal flood resilience metrics relevant to the management of an open coast artificial berm, as well as the stochastic nature of future total water levels.

California

Detection and measurement of land subsidence and uplift using interferometric synthetic aperture radar, San Diego, California, USA, 2016–2018

Land subsidence associated with groundwater-level declines is stipulated as an “undesirable effect” in California’s Sustainable Groundwater Management Act (SGMA), and has been identified as a potential issue in San Diego, California, USA. The United States Geological Survey (USGS), the Sweetwater Authority, and the City of San Diego, undertook a cooperative study to better understand the hydromechanical response of the coastal aquifer system using Interferometric Synthetic Aperture Radar (InSAR) techniques. Three periods of interest were analyzed for this study that correspond to the periods before and after two substantial changes were made to the location and volume of pumpage: (1) April–August 2016 when groundwater levels and land surface elevation were relatively stable during normal pumping, (2) September 2016–May 2017 when groundwater levels recovered and the land surface uplifted during a period of substantially reduced pumping, (3) June 2017–October 2018 when groundwater levels declined and land subsidence occurred when pumpage resumed and expanded to new wells. Spatial and temporal characterization of the hydromechanical response to changes in pumpage is important for managing land subsidence. Further study using InSAR techniques, especially when combined with ground-based geodetic and monitoring-well networks, will provide water managers information to help effectively manage groundwater resources as stipulated in the SGMA.

California

Deglacial water-table decline in Southern California recorded by noble gas isotopes

Constraining the magnitude of past hydrological change may improve understanding and predictions of future shifts in water availability. Here we demonstrate that water-table depth, a sensitive indicator of hydroclimate, can be quantitatively reconstructed using Kr and Xe isotopes in groundwater. We present the first-ever measurements of these dissolved noble gas isotopes in groundwater at high precision (≤0.005‰ amu −1 ; 1σ), which reveal depth-proportional signals set by gravitational settling in soil air at the time of recharge. Analyses of California groundwater successfully reproduce modern groundwater levels and indicate a 17.9 ± 1.3 m (±1 SE) decline in water-table depth in Southern California during the last deglaciation. This hydroclimatic transition from the wetter glacial period to more arid Holocene accompanies a surface warming of 6.2 ± 0.6 °C (±1 SE). This new hydroclimate proxy builds upon an existing paleo-temperature application of noble gases and may identify regions prone to future hydrological change.

California

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, Southern California—2018 data summary

We surveyed for Least Bell’s Vireos ( Vireo bellii pusillus ; vireo) and Southwestern Willow Flycatchers ( Empidonax traillii extimus ; flycatcher) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2018. Surveys were conducted from April 17 to July 16 (vireo) and from May 16 to July 27 (flycatcher). We found 148 vireo territories, at least 90 of which were occupied by pairs. Six additional transient vireos were detected. Vireos used six different habitat types in the survey area: mixed willow, willow-cottonwood, riparian scrub, willow-sycamore, upland scrub, and non-native habitat. Forty-one percent of the vireos were detected in habitat characterized as mixed willow, and 97 percent of the vireos were detected in habitat with greater than 50 percent native plant cover. Of 10 banded vireos detected in the survey area, 5 had been given full color-band combinations prior to 2018. Four other vireos with single (natal) federal bands were recaptured, identified, and color banded in 2018. One vireo with a single dark blue federal band, indicating that it was banded as a nestling on the lower San Luis Rey River, could not be recaptured for identification. One resident flycatcher and eight transient flycatchers of unknown subspecies were observed in the survey area in 2018. The resident flycatcher (male) was detected in a territory of mixed willow habitat with greater than 95 percent native plant cover. He was detected as a single male from May 24 to July 17, 2018, and no evidence of pairing or nesting was observed. The male flycatcher, detected with a single natal band, was recaptured, identified, and given a unique color combination in 2018. The male flycatcher was originally banded as a nestling on the middle San Luis Rey River in 2016. The eight transient flycatchers were detected from May 25 to June 8, 2018, in mixed willow riparian, willow-cottonwood, and riparian scrub habitat with greater than 95 percent native plant cover.

California

Non-invasive genetic sampling of Southern Mule Deer ( Odocoileus hemionus fuliginatus ) reveals limited movement across California State Route 67 in San Diego County

&mdash;The Southern Mule Deer is a mobile but non-migratory large mammal found throughout southern California and is a covered species in the San Diego Multi-Species Conservation Plan. We assessed deer movement and population connectivity across California State Route 67 and two smaller roads in eastern San Diego County using non-invasive genetic sampling. We collected deer scat pellets between April and November 2015, and genotyped pellets at 15 microsatellites and a sex determination marker. We successfully genotyped 71 unique individuals from throughout the study area and detected nine recapture events. Recaptures were generally found close to original capture locations (within 1.5 km). We did not detect recaptures across roads; however, pedigree analysis detected 21 first order relative pairs, of which approximately 20% were found across State Route 67. Exact tests comparing allele frequencies between groups of individuals in pre-defined geographic clusters detected significant genetic differentiation across State Route 67. In contrast, the assignment-based algorithm of STRUCTURE supported a single genetic cluster across the study area. Our data suggest that State Route 67 may reduce, but does not preclude, movement and gene flow of Southern Mule Deer.

California

Demography and movement patterns of leopard sharks (Triakis semifasciata) aggregating near the head of a submarine canyon along the open coast of southern California, USA

The demography, spatial distribution, and movement patterns of leopard sharks (Triakis semifasciata) aggregating near the head of a submarine canyon in La Jolla, California, USA, were investigated to resolve the causal explanations for this and similar shark aggregations. All sharks sampled from the aggregation site ( n =140) were sexually mature and 97.1 % were female. Aerial photographs taken during tethered balloon surveys revealed high densities of milling sharks of up to 5470 sharks ha -1 . Eight sharks were each tagged with a continuous acoustic transmitter and manually tracked without interruption for up to 48 h. Sharks exhibited strong site-fidelity and were generally confined to a divergence (shadow) zone of low wave energy, which results from wave refraction over the steep bathymetric contours of the submarine canyon. Within this divergence zone, the movements of sharks were strongly localized over the seismically active Rose Canyon Fault. Tracked sharks spent most of their time in shallow water (&le;2 m for 71.0 % and &le;10 m for 95.9 % of time), with some dispersing to deeper (max: 53.9 m) and cooler (min: 12.7 &deg;C) water after sunset, subsequently returning by sunrise. These findings suggest multiple functions of this aggregation and that the mechanism controlling its formation, maintenance, and dissolution is complex and rooted in the sharks' variable response to numerous confounding environmental factors.

California

Polyplacophora (Mollusca) from the San Diego Formation: A remarkable assemblage of fossil chitons from the Pliocene of southern Califoria

A rich chiton assemblage consisting of more than 15,000 valves (shell plates) was collected by George P. Kanakoff (1897–1973) from Pliocene exposures of the San Diego Formation just north of the U.S./Mexican border. The assemblage includes 16 extant species, three extinct species (Callistochiton sphaerae n. sp., Lepidozona kanakoffi n. sp., and Amicula solivaga n. sp.), and three indeterminate species. The collection is dominated by the genus Callistochiton and also includes the genera Leptochiton, Oldroydia, Lepidozona, Stenoplax, Amicula, Mopalia, Placiphorella, Tonicella, Dendrochiton, and Nuttallina. This assemblage expands the known stratigraphic and paleogeographic ranges of many chiton genera and species and provides information about an apparent late Cenozoic diversification of chitons along the Pacific Coast of North America. Chitons appear to have diversified in the northeastern Pacific from the middle Miocene to Pleistocene, driven in part by regional increases in productivity and environmental heterogeneity during that time. The chitons are interpreted to have been deposited at inner-neritic depths (,25 m) in the mouth of a bay or in a continental shelf environment, and the annual temperature range and seasonality are inferred to have been similar to those that occur off the nearby San Diego coast today. However, the fossil assemblages also include a mixture of taxa that today range only to the north or to the south. The large sample sizes of chiton valves allow rigorous analysis of the ratio of valve types, revealing a divergence from the expected pattern. This divergence is even greater on average than what occurs in assemblages of chiton valves in Holocene sediments, revealing that taphonomic factors bias valve ratios long after valves are disarticulated. New foraminiferan and molluscan data indicate a middle or late Pliocene age of deposition for these beds, between 3.3 to 2.5 million years ago (Ma), and possibly about 3.0 Ma.

California

Gaining the necessary geologic, hydrologic, and geochemical understanding for additional brackish groundwater development, coastal San Diego, California, USA

Local water agencies and the United States Geological Survey are using a combination of techniques to better understand the scant freshwater resources and the much more abundant brackish resources in coastal San Diego, California, USA. Techniques include installation of multiple-depth monitoring well sites; geologic and paleontological analysis of drill cuttings; geophysical logging to identify formations and possible seawater intrusion; sampling of pore-water obtained from cores; analysis of chemical constituents including trace elements and isotopes; and use of scoping models including a three-dimensional geologic framework model, rainfall-runoff model, regional groundwater flow model, and coastal density-dependent groundwater flow model. Results show that most fresh groundwater was recharged during the last glacial period and that the coastal aquifer has had recurring intrusions of fresh and saline water. These intrusions disguise the source, flowpaths, and history of ground water near the coast. The flow system includes a freshwater lens resting on brackish water; a 100-meter-thick flowtube of freshwater discharging under brackish estuarine water and above highly saline water; and broad areas of fine-grained coastal sediment filled with fairly uniform brackish water. Stable isotopes of hydrogen and oxygen indicate the recharged water flows through many kilometers of fractured crystalline rock before entering the narrow coastal aquifer.

California

Wildfires alter rodent community structure across four vegetation types in southern California, USA

We surveyed burned and unburned plots across four habitat reserves in San Diego County, California, USA, in 2005 and 2006, to assess the effects of the 2003 wildfires on the community structure and relative abundance of rodent species. The reserves each contained multiple vegetation types (coastal sage scrub, chaparral, woodland, and grassland) and spanned from 250 m to 1078 m in elevation. Multivariate analyses revealed a more simplified rodent community structure in all burned habitats in comparison to unburned habitats. Reduction in shrub and tree cover was highly predictive of changes in post-fire rodent community structure in the burned coastal sage scrub and chaparral habitats. Reduction in cover was not predictive for the less substantially burned woodlands and grasslands, for which we hypothesized that interspecific competition played a greater role in post-fire community structure. Across vegetation types, generalists and open habitat specialists typically increased in relative abundance, whereas closed habitat specialists decreased. We documented significant increases in relative abundance of the deer mouse ( Peromyscus maniculatus Wagner) and Dulzura kangaroo rat ( Dipodomys simulans Merriam). In contrast, we found significant decreases in relative abundance for the California mouse ( Peromyscus californicus Gambel), San Diego pocket mouse ( Chaetodipus fallax Merriam), desert woodrat ( Neotoma lepida Thomas), and brush mouse ( Peromyscus boylii Baird). Currently, our research program involves assessment of whether habitat conservation plans (HCPs) in southern California provide long-term protection to HCP covered species, as well as preserve ecosystem function. The scenario of increased wildfires needs to be incorporated into this assessment. We discuss our results in relation to management and conservation planning under a future scenario of larger and more frequent wildfires in southern California.

California

Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project

Groundwater quality in the approximately 3,900-square-mile (mi 2 ) San Diego Drainages Hydrogeologic Province (hereinafter San Diego) study unit was investigated from May through July 2004 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in southwestern California in the counties of San Diego, Riverside, and Orange. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA San Diego study was designed to provide a statistically robust assessment of untreated-groundwater quality within the primary aquifer systems. The assessment is based on water-quality and ancillary data collected by the USGS from 58 wells in 2004 and water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer systems (hereinafter referred to as the primary aquifers) were defined by the depth interval of the wells listed in the California Department of Public Health (CDPH) database for the San Diego study unit. The San Diego study unit consisted of four study areas: Temecula Valley (140 mi 2 ), Warner Valley (34 mi 2 ), Alluvial Basins (166 mi 2 ), and Hard Rock (850 mi 2 ). The quality of groundwater in shallow or deep water-bearing zones may differ from that in the primary aquifers. For example, shallow groundwater may be more vulnerable to surficial contamination than groundwater in deep water-bearing zones. This study had two components: the status assessment and the understanding assessment. The first component of this study-the status assessment of the current quality of the groundwater resource-was assessed by using data from samples analyzed for volatile organic compounds (VOC), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. The status assessment is intended to characterize the quality of groundwater resources within the primary aquifers of the San Diego study unit, not the treated drinking water delivered to consumers by water purveyors. The second component of this study-the understanding assessment-identified the natural and human factors that affect groundwater quality by evaluating land use, well construction, and geochemical conditions of the aquifer. Results from these evaluations were used to help explain the occurrence and distribution of selected constituents in the study unit. Relative-concentrations (sample concentration divided by benchmark concentration) were used as the primary metric for relating concentrations of constituents in groundwater samples to water-quality benchmarks for those constituents that have Federal and (or) California benchmarks. For organic and special-interest constituents, relative-concentrations were classified as high (> 1.0), moderate (> 0.1 and &le;1.0), and low (&le;0.1). For inorganic constituents, relative concentrations were classified as high (> 1.0), moderate (> 0.5 and &le;1.0), and low (&le;0.5). Grid-based and spatially weighted approaches were then used to evaluate the proportion of the primary aquifers (aquifer-scale proportions) with high, moderate, and low relative-concentrations for individual compounds and classes of constituents. One or more of the inorganic constituents with health-based benchmarks were high (relative to those benchmarks) in 17.6 percent of the primary aquifers in the Temecula Valley, Warner Valley, and Alluvial Basins study areas (hereinafter also collectively referred to as the Alluvial Fill study areas because they are composed of alluvial fill aquifers), and in 25.0 percent of the Hard Rock study area. Inorganic constituents with health-based benchmarks that were frequently detected at high relative-concentrations included vanadium (V), arsenic (As), and boron (B). Vanadium and As concentrations were not significantly correlated to either urban or agricultural land use indicating natural sources as the primary contributors of these constituents to groundwater. The positive correlation of B concentration to urban land-use was significant which indicates that anthropogenic activities are a contributing source of B to groundwater. The correlation of V, As and B concentrations to pH was positive, indicating that in alkaline groundwater these constituents are being desorbed from, or being inhibited from adsorbing to, particle surfaces. Inorganic constituents with aesthetic benchmarks that were detected at high relative-concentrations include manganese (Mn), iron (Fe), and total dissolved solids (TDS). In the Alluvial Fill study areas, Mn and TDS were detected at high relative-concentrations in 13.7 percent of the primary aquifers, and Fe in 6.9 percent. In the Hard Rock study area, Mn was detected at high relative-concentrations in 33.3 percent of the primary aquifers, and TDS in 16.7 percent; Fe was not detected at high relative-concentrations. Total dissolved solids concentrations were significantly correlated to agricultural land use suggesting that agricultural practices are a contributing source of TDS to groundwater. Manganese and Fe concentrations were highest in groundwater with low dissolved oxygen and pH indicating that the reductive dissolution of oxyhydroxides may be an important mechanism for the mobilization of Mn and Fe in groundwater. TDS concentrations were highest in shallow wells and in modern (< 50 yrs) groundwater which indicates anthropogenic activities as a source of TDS concentrations in groundwater. The relative-concentrations of organic constituents with health-based benchmarks were high in 3.0 percent of the primary aquifers in the Alluvial Fill study areas. A single detection in the Alluvial Basins study area of the discontinued gasoline oxygenate methyl tert-butyl ether (MTBE) was the only organic constituent detected at a high relative-concentration; high relative-concentrations of these constituents were not detected in the Hard Rock study area. Twelve of 88 VOCs and 14 of 123 pesticides and pesticide degradates analyzed in grid wells were detected. Chloroform was the only VOC detected in more than 10 percent of the grid wells. The herbicides simazine, atrazine, and prometon were each detected in greater than 10 percent of the grid wells. Perchlorate was detected in 22 percent of the grid wells sampled. The understanding assessment showed a significant correlation of trihalomethanes (THMs) and solvents to urban land-use, indicating that detections of these constituents are more likely to occur in groundwater underlying urbanized areas of the study unit. MTBE concentrations were negatively correlated to the distance from the nearest leaking underground fuel tank, indicating that point sources are the most significant contributing factor for MTBE concentrations to groundwater in the study unit. The positive correlation of THM and herbicide concentrations to modern groundwater was significant, as was the negative correlation of herbicide concentrations to pH and anoxic groundwater. The negative correlation of herbicides to pH and anoxic groundwater was likely due to the fact that these constituents were detected more frequently in shallow wells where groundwater conditions tend to be oxic with relatively low pH.

California

Multibeam bathymetry and selected perspective views offshore San Diego, California

This set of two posters consists of a map on one sheet and a set of seven perspective views on the other. The ocean floor image was generated from multibeam-bathymetry data acquired by Federal and local agencies as well as academic institutions including: - U.S. Geological Survey mapped from the La Jolla Canyon south to the US-Mexico border using a Kongsberg Simrad multibeam echosounder system (MBES) (March - April 1998). Data and metadata available at http://pubs.usgs.gov/of/2004/1221/. - Woods Hole Oceanographic Institution and SCRIPPS Institution of Oceanography mapped the majority of the La Jolla Fan Valley including the sea floor to the north and south of the valley using a Seabeam 2100 MBES. Data available at http://www.ngdc.noaa.gov/mgg/bathymetry/multibeam.html. Survey ID, AT07L09, Chief Scientists, Barrie Walden and Joseph Coburn (April 2002). - California State University, Monterey Bay, mapped Scripps Canyon and the head of La Jolla Canyon using a Reson 8101 MBES (October 2001). Data and metadata available at http://seafloor.csumb.edu/SFMLwebDATA.htm. This work was funded by the California Department of Fish and Game California Coastal Conservancy, San Diego Association of Governments (SANDAG), California Department of Fish and Game, and Fugro Pelagos mapped the nearshore region out to about 35-40 m. - The sea floor within this image that has not been mapped with MBES is filled in with interpreted bathymetry gridded from single-beam data available at http://www.ngdc.noaa.gov/mgg/bathymetry/hydro.html. Depths are in meters below sea level, which is referenced to Mean Lower Low Water.

California

High-resolution boomer seismic-reflection profiles of the shelf off southern California from cruise A-1-00-SC: Santa Monica Bay to San Diego

High-resolution boomer data were collected in the California Continental Borderland as part of the southern California Earthquake Hazards Task of the Southern California Coastal and Marine Geology Regional Investigations Project. During the period from 1997 to 2002, five data-acquisition cruises collected seismic-reflection data using several different systems from offshore Santa Barbara, California, south to the Exclusive Economic Zone boundary with Mexico. A key mission of this project was to map late Quaternary deformation in addition to improving our understanding of which offshore fault zones might have potential to damage highly populated areas of southern California. State regulations concerning the use of seismic-reflection equipment within three miles of the coastline precluded the routine gathering of high-resolution multichannel data in that swath adjacent to the coast. Boomer seismic-reflection data, however, can be obtained within the state 3-mile limit provided the operation receives authorization from the California State Lands Commission. The Geopulse boomer data accessible through this report were collected on the cruise A-1-00-SC, which was the only survey where we requested permission to work inside the 3-mile limit of the State of California. These data are critical to discovering connections between onshore and offshore faults, the overall lengths of which are related to the potential size of an earthquake that might be generated along them. The 2000 survey was designed to fill the gap between onshore data and reflection data obtained in deeper water on previous cruises as well as data anticipated from future surveys. This report includes trackline maps showing the location of the data, as well as both digital data files (SEG-Y) and images of all of the profiles.

California

Metal and trace element burdens in two shorebird species at two sympatric wintering sites in southern California

In January and November, 1994, ten willets (Catoptrophorus semipalmatus) and ten black-bellied plovers (Pluvialis squatarola) were collected at a south-facing sandy beach at the North Island Naval Air Station (NASNI) and ten willets and three plovers were collected at the Tijuana Slough National Wildlife Refuge (TSNWR), 16 km to the southeast. Concentrations of 19 inorganic analytes were determined in the livers. Differences between sexes in diet or abilities to retain some analytes are indicated because male willets tend to have greater levels of Cd than females and male plovers tend to have greater levels of Fe, Hg, and Mn than females. Concentrations of Hg and Mg in willets decreased from January to November. If this decrease is a part of an annual cycle, then the birds may be acquiring those elements while at NASNI. The differences between sites shows higher levels of As and Se but lower levels of Mn in willets at NASNI while plovers have lower levels of Cu, Mg and Zn at NASNI. There were no correlations between Hg and Se concentrations in the livers of any sample group of birds.

California