Geology topics

Research about Sacramento-San Joaquin Delta

Source-linked reports with geographic coverage including Sacramento-San Joaquin Delta.

49 records · Page 3Linked to original sources

USGS2011

Characterizing land surface change and levee stability in the Sacramento-San Joaquin Delta using UAVSAR radar imagery

The islands of the Sacramento-San Joaquin Delta have been subject to subsidence since they were first reclaimed from the estuary marshlands starting over 100 years ago, with most of the land currently lying below mean sea level. This area, which is the primary water resource of the state of California, is under constant threat of inundation from levee failure. Since July 2009, we have been imaging the area using the quad-polarimetric UAVSAR L-band radar, with eighteen data sets collected as of April 2011. Here we report results of our polarimetric and differential interferometric analysis of the data for levee deformation and land surface change.

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USGS2009

Peat accretion histories during the past 6,000 years in the marshes of the Sacramento-San Joaquin Delta, CA, USA

The purpose of this study was to determine how vertical accretion rates in marshes vary through the millennia. Peat cores were collected in remnant and drained marshes in the Sacramento–San Joaquin Delta of California. Cubic smooth spline regression models were used to construct age–depth models and accretion histories for three remnant marshes. Estimated vertical accretion rates at these sites range from 0.03 to 0.49 cm year −1 . The mean contribution of organic matter to soil volume at the remnant marsh sites is generally stable (4.73% to 6.94%), whereas the mean contribution of inorganic matter to soil volume has greater temporal variability (1.40% to 7.92%). The hydrogeomorphic position of each marsh largely determines the inorganic content of peat. Currently, the remnant marshes are keeping pace with sea level rise, but this balance may shift for at least one of the sites under future sea level rise scenarios.

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USGS2009

The legacy of wetland drainage on the remaining peat in the Sacramento-San Joaquin Delta, California, USA

Throughout the world, many extensive wetlands, such as the Sacramento-San Joaquin Delta of California (hereafter, the Delta), have been drained for agriculture, resulting in land-surface subsidence of peat soils. The purpose of this project was to study the in situ effects of wetland drainage on the remaining peat in the Delta. Peat cores were retrieved from four drained, farmed islands and four relatively undisturbed, marsh islands. Core samples were analyzed for bulk density and percent organic carbon. Macrofossils in the peat were dated using radiocarbon age determination. The peat from the farmed islands is highly distinct from marsh island peat. Bulk density of peat from the farmed islands is generally greater than that of the marsh islands at a given organic carbon content. On the farmed islands, increased bulk density, which is an indication of compaction, decreases with depth within the unoxidized peat zone, whereas, on the marsh islands, bulk density is generally constant with depth except near the surface. Approximately 55–80% of the original peat layer on the farmed islands has been lost due to landsurface subsidence. For the center regions of the farmed islands, this translates into an estimated loss of between 2900-5700 metric tons of organic carbon/hectare. Most of the intact peat just below the currently farmed soil layer is over 4000 years old. Peat loss will continue as long as the artificial water table on the farmed islands is held below the land surface.

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USGS2008

A note on the effect of wind waves on vertical mixing in Franks Tract, Sacramento-San Joaquin Delta, California, USA

A one-dimensional numerical model that simulates the effects of whitecapping waves was used to investigate the importance of whitecapping waves to vertical mixing at a 3-meter-deep site in Franks Tract in the Sacramento-San Joaquin Delta over an 11-day period. Locally-generated waves of mean period approximately 2 s were generated under strong wind conditions; significant wave heights ranged from 0 to 0.3 m. A surface turbulent kinetic energy flux was used to model whitecapping waves during periods when wind speeds > 5 m s-1 (62% of observations). The surface was modeled as a wind stress log-layer for the remaining 38% of the observations. The model results demonstrated that under moderate wind conditions (5–8 m s-1 at 10 m above water level), and hence moderate wave heights, whitecapping waves provided the dominant source of turbulent kinetic energy to only the top 10% of the water column. Under stronger wind (> 8 m s-1), and hence larger wave conditions, whitecapping waves provided the dominant source of turbulent kinetic energy over a larger portion of the water column; however, this region extended to the bottom half of the water column for only 7% of the observation period. The model results indicated that phytoplankton concentrations close to the bed were unlikely to be affected by the whitecapping of waves, and that the formation of concentration boundary layers due to benthic grazing was unlikely to be disrupted by whitecapping waves. Furthermore, vertical mixing of suspended sediment was unlikely to be affected by whitecapping waves under the conditions experienced during the 11-day experiment. Instead, the bed stress provided by tidal currents was the dominant source of turbulent kinetic energy over the bottom half of the water column for the majority of the 11-day period.

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USGS2008

Subsidence reversal in a re-establish wetland in the Sacramento-San Joaquin Delta, California, USA

The stability of levees in the Sacramento-San Joaquin Delta is threatened by continued subsidence of Delta peat islands. Up to 6 meters of land-surface elevation has been lost in the 150 years since Delta marshes were leveed and drained, primarily from oxidation of peat soils. Flooding subsided peat islands halts peat oxidation by creating anoxic soils, but net accumulation of new material in restored wetlands is required to recover land-surface elevations. We investigated the subsidence reversal potential of two 3 hectare, permanently flooded, impounded wetlands re-established on a deeply subsided field on Twitchell Island. The shallower wetland (design water depth 25 cm) was almost completely colonized by dense emergent marsh vegetation within two years; whereas, the deeper wetland (design water depth 55 cm) which developed spatially variable depths as a result of heterogeneous colonization by emergent vegetation, still had some areas remaining as open water after nine years. Changes in land-surface elevation were quantified using repeated sedimentation-erosion table measurements. New material accumulating in the wetlands was sampled by coring. Land-surface elevations increased by an average of 4 cm/yr in both wetlands from 1997 to 2006; however, the rates at different sites in the wetlands ranged from -0.5 to +9.2 cm/yr. Open water areas of the deeper wetland without emergent vegetation had the lowest rates of land-surface elevation gain. The greatest rates occurred in areas of the deeper wetland most isolated from the river water inlets, with dense stands of emergent marsh vegetation (tules and cattails). Vegetated areas of the deeper wetland in the transition zones between open water and mature emergent stands had intermediate rates of land-surface gain, as did the entire shallower wetland. These results suggest that the dominant component contributing to land-surface elevation gain in these wetlands was accumulation of organic matter, rather than mineral sediment, and that accumulation of organic matter in emergent marshes is strongly affected by hydrologic factors. Re-established, non-tidal wetlands with managed hydrology can produce significant increases in land-surface elevations, which can help to improve levee stability and protect subsided islands from future flooding.

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USGS2007

Effects of flow diversions on water and habitat quality: Examples from California's highly manipulated Sacramento–San Joaquin Delta

We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estuary. Each source has distinct water-quality characteristics, and the contribution of each source varies in response to natural hydrologic variability and water diversions. We use simulations with a tidal hydrodynamic model to reveal how three diversion events, as case studies, influence water quality through their alteration of Delta-wide water circulation patterns and flushing time. Reduction of export pumping decreases the proportion of Sacramento- to San Joaquin-derived fresh water in the central Delta, leading to rapid increases in salinity. Delta Cross Channel gate operations control salinity in the western Delta and alter the freshwater source distribution in the central Delta. Removal of the head of Old River barrier, in autumn, increases the flushing time of the Stockton Ship Channel from days to weeks, contributing to a depletion of dissolved oxygen. Each shift in water quality has implications either for habitat quality or municipal drinking water, illustrating the importance of a systems view to anticipate the suite of changes induced by flow manipulations, and to minimize the conflicts inherent in allocations of scarce resources to meet multiple objectives.

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USGS2003

Potential effects of organic carbon production on ecosystems and drinking water quality

Restoration of tidal wetlands in the Sacramento-San Joaquin Delta (Delta) is an important component of the Ecosystem Restoration Program of the CALFED Bay-Delta Program (CALFED). CALFED is a collaborative effort among state and federal agencies to restore the ecological health and improve water management of the Delta and San Francisco Bay (Bay). Tidal wetland restoration is intended to provide valuable habitat for organisms and to improve ecosystem productivity through export of various forms of organic carbon, including both algae and plant detritus. However, the Delta also provides all or part of the drinking water for over 22 million Californians. In this context, increasing sources of organic carbon may be a problem because of the potential increase in the production of trihalomethanes and other disinfection by-products created during the process of water disinfection. This paper reviews the existing information about the roles of organic carbon in ecosystem function and drinking water quality in the Bay-Delta system, evaluates the potential for interaction, and considers major uncertainties and potential actions to reduce uncertainty. In the last 10 years, substantial progress has been made on the role of various forms of organic carbon in both ecosystem function and drinking water quality; however, interactions between the two have not been directly addressed. Several ongoing studies are beginning to address these interactions, and the results from these studies should reduce uncertainty and provide focus for further research.

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USGS2003

Organic carbon trends, loads, and yields to the Sacramento-San Joaquin Delta, California, water years 1980 to 2000

Organic carbon, nutrient, and suspended sediment concentration data were analyzed for the Sacramento and San Joaquin River Basins for the period 1980-2000. The data were retrieved from three sources: the U.S. Geological Survey's National Water Information System, the U.S. Environmental Protection Agency's Storage and Retrieval System, and the California Interagency Ecological Program's relational database. Twenty sites were selected, all of which had complete records of daily streamflow data. These data met the minimal requirements of the statistical programs used to estimate trends, loads, and yields. The seasonal Kendall program was used to estimate trends in organic carbon, nutrient, and suspended sediment. At all 20 sites, analyses showed that in the 145 analyses for the seven constituents, 95 percent of the analyses had no significant trend. Dissolved organic carbon (DOC) concentrations were significant only for four sites: the American River at Sacramento, the Sacramento River sites near Freeport, Orestimba Creek at River Roads near Crows Landing, and the San Joaquin River near Vernalis. Loads were calculated using two programs, ESTIMATOR and LOADEST2. The 1998 water year was selected to describe loads in the Sacramento River Basin. Organic carbon, nutrient, and suspended sediment loads at the Sacramento River sites near Freeport included transported loads from two main upstream sites: the Sacramento River at Verona and the American River at Sacramento. Loads in the Sacramento River Basin were affected by the amount of water diverted to the Yolo Bypass (the amount varies annually, depending on the precipitation and streamflow). Loads at the Sacramento River sites near Freeport were analyzed for two hydrologic seasons: the irrigation season (April to September) and the nonirrigation season (October to March). DOC loads are lower during the irrigation season then they are during the nonirrigation season. During the irrigation season, water with low concentrations of DOC is released from reservoirs and used for irrigation. On the other hand, during the nonirrigation season, streamflow results from surface water runoff and has higher concentrations of organic carbon, nutrients, and suspended sediment. The 1986 and 1987 water years were selected to describe loads in the San Joaquin River Basin. Organic carbon, nutrient, and suspended sediment loads in the San Joaquin River near Vernalis included transported loads from upstream sites, such as the Mud and Salt Sloughs, the Merced River at River Roads Bridge near Newman, the Tuolumne River at Modesto, and the Stanislaus River at Ripon. Loads at the San Joaquin River near Vernalis also were analyzed for the two seasons. The DOC load for the San Joaquin River at Vernalis is slightly higher during the irrigation season. Yields were calculated in an attempt to rank the subbasins in the Sacramento and San Joaquin River Basins. Five sites delivered streamflow from agricultural and urban sources that had relatively high yields of organic carbon: Sacramento Slough near Knights Landing, Arcade Creek near Del Paso Heights, Salt Slough, Mud Slough, and Colusa Basin Drain at Road 99E near Knights Landing.

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USGS2000

Primary food resources in the Sacramento-San Joaquin Delta

The Sacramento-San Joaquin River Delta, a complex mosaic of tidal freshwater habitats, is now a focus of ecosystem rehabilitation because of changes in critical functions associated with its geographic location at the landestuary interface. One of these functions is the production, transport, and transformation of organic matter that constitutes the “primary food supply,” that is, the food supply to the base of the food web. Interest in the primary food supply is motivated by evidence for sub-optimal food quantity or quality at trophic levels that support fish recruitment, including primary consumers such as clams, mysids, cladocerans, rotifers, and native copepods. We used the historical data set to examine the magnitudes of the most important organic matter sources for the Delta, the factors underlying their interannual and longer-term variability, and the implications of ecosystem rehabilitation actions for these sources. Here, we present a summary of the first phase of the analysis, including the quantitative importance of different organic matter sources and some of the hydrological controls on their year-to-year variability. The full report of this first phaseincluding data sources, the methods of calculation, and references, is in press elsewhere (Jassby and Cloern forthcoming). The historical data analysis is part of a larger project in which measurements of stable isotopes and biogeochemical markers, and experiments on organic matter biodegradation and zooplankton growth rates, are being used collectively to define the primary food resources and their quality.

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USGS1998

Dissolved organic carbon concentrations and compositions, and trihalomethane formation potentials in waters from agricultural peat soils, Sacramento-San Joaquin Delta, California; implications for drinking-water quality

Water exported from the Sacramento-San Joaquin River delta (Delta) is an important drinking-water source for more than 20 million people in California. At times, this water contains elevated concentrations of dissolved organic carbon and bromide, and exceeds the U.S. Environmental Protection Agency's maximum contaminant level for trihalomethanes of 0.100 milligrams per liter if chlorinated for drinking water. About 20 to 50 percent of the trihalomethane precursors to Delta waters originates from drainage water from peat soils on Delta islands. This report elucidates some of the factors and processes controlling and affecting the concentration and quality of dissolved organic carbon released from peat soils and relates the propensity of dissolved organic carbon to form trihalomethanes to its chemical composition. Soil water was sampled from near-surface, oxidized, well-decomposed peat soil (upper soil zone) and deeper, reduced, fibrous peat soil (lower soil zone) from one agricultural field in the west central Delta over 1 year. Concentrations of dissolved organic carbon in the upper soil zone were highly variable, with median concentrations ranging from 46.4 to 83.2 milligrams per liter. Concentrations of dissolved organic carbon in samples from the lower soil zone were much less variable and generally slightly higher than samples from the upper soil zone, with median concentrations ranging from 49.3 to 82.3 milligrams per liter. The dissolved organic carbon from the lower soil zone had significantly higher aromaticity (as measured by specific ultraviolet absorbance) and contained significantly greater amounts of aromatic humic substances (as measured by XAD resin fractionation and carbon-13 nuclear magnetic resonance analysis of XAD isolates) than the dissolved organic carbon from the upper soil zone. These results support the conclusion that more aromatic forms of dissolved organic carbon are produced under anaerobic conditions compared to aerobic conditions. Dissolved organic carbon concentration, trihalomethane formation potential, and ultraviolet absorbance were all highly correlated, showing that trihalomethane precursors increased with increasing dissolved organic carbon and ultraviolet absorbance for whole water samples. Contrary to the generally accepted conceptual model for trihalomethane formation that assumes that aromatic forms of carbon are primary precursors to trihalomethanes, results from this study indicate that dissolved organic carbon aromaticity appears unrelated to trihalomethane formation on a carbon-normalized basis. Thus, dissolved organic carbon aromaticity alone cannot fully explain or predict trihalomethane precursor content, and further investigation of aromatic and nonaromatic forms of carbon will be needed to better identify trihalomethane precursors.

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USGS1996

Subsidence of agricultural lands in the Sacramento‐San Joaquin Delta, California: Role of aqueous and gaseous carbon fluxes

To examine the causes of land subsidence on marshes drained for agriculture, carbon fluxes and changes in land‐surface elevation were determined on three islands in the Sacramento‐San Joaquin Delta, California. Over the time period of March 1990 to May 1992, gaseous CO 2 fluxes were determined approximately monthly using closed chambers, and dissolved carbon fluxes were determined from the dissolved carbon loads of drainage ditches adjacent to each field site. Surface elevation changes were measured continuously by measuring the distance between the land surface and an elevated structure anchored beneath the organic soil layer. Gaseous CO 2 fluxes accounted for most of the permanent subsidence measured over the monitoring period. Gaseous CO 2 fluxes are strongly affected by soil temperature. Net subsidence rates for the three islands, which have different depths of organic soils and water‐management practices, range from 0.46 to 1.06 cm/yr. Estimates of dissolved organic carbon fluxes for all three islands were small relative to gaseous CO 2 losses and represent <1% of the measured subsidence.

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USGS1995

Land subsidence in drained histosols and highly organic mineral soils of California

This study was conducted to determine historical trends in subsidence in the Sacramento-San Joaquin Delta and their environmental controls. In the western Delta, average subsidence rates were 2.3 cm yr-1 from 1910 to 1.5 cm yr-1 from 1952 to 1988. Spatially variability in subsidence was correlated with organic matter content of the soil which in turn was related to the depositional and drainage history of the Delta. Subsidence rates appaeared to be independent of crops grown.

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USGS1982

Geologic maps of the Sacramento-San Joaquin Delta, California

The Sacramento-San Joaquin Delta, the arm of the San Francisco Bay estuary that reaches into the Central Valley of California, differs from typical coastal-plain deltas in three important respects. First, rather than meeting the ocean individually and directly, all major waterways of this delta discharge via a single constricted outlet into a chain of estuarine bays and straits. Second, in the most common vertical sequence of deposits, peat and mud deposited in tidal marshes and swamps (tidal wetlands) directly overlie alluvium or eolian sand, a sequence recording a landward spread of tidal environments rather than the seaward migration of fluvial environments that is typical of coastal-plain deltas (Cosby, 1941, p. 43; Thompson, 1957, p. 12; Shlemon and Begg, 1975, p. 259; Atwater and Belknap, 1980). Finally, intensive human use has led to a peculiar set of conflicts involving rights to water and responsibilities for flood-control levees (Kockelman and other, 1982).

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