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Yu-Chun Kao

Publications and source records attributed to Yu-Chun Kao.

At least 19 recordsLinked to original sources
USGS2025

Exploring the importance of metapopulation dynamics with population control strategies for invasive silver carp in the upper Mississippi River

Invasive bigheaded carps (Bighead Carp Hypophthalmichthys nobilis , Silver Carp Hypophthalmichthys molitrix , and their hybrids Hypophthalmichthys spp.) currently infest the Mississippi River Basin. Bigheaded carps can outcompete native species in invaded waters and can also transform the surrounding environment. Currently, resource managers seek to limit the population abundance of bigheaded carps and their range expansion into additional regions of the Upper Mississippi River (UMR) but lack a tool to evaluate different control strategies. Here, we present an application of a Silver Carp spatial population model in the UMR to fill this gap. We used the model to explore how simulated control strategies could affect Silver Carp metapopulation dynamics. More specifically, we assessed and compared the importance of movement deterrents, removal locations, and recruitment areas on Silver Carp population abundances across the UMR. Strategies that included a combination of removal efforts and deterrents resulted in the largest decreases in Silver Carp abundance in the upper pools of the UMR. Furthermore, scenarios that targeted source populations of Silver Carp rather than sink populations resulted in larger decreases in Silver Carp abundance at the invasion front. The effectiveness of these combined simulated strategies also depended on the location of Silver Carp recruitment. Our work suggests that an understanding of Silver Carp metapopulation dynamics may be important for control efforts and could help to inform the management of Silver Carp in the UMR.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗
USGS2025

Are we heading towards a global decrease in coregonine catches?

Coregonines have specific ecological needs, making them potentially very vulnerable to changes in lake conditions. A contemporary concern is that many lakes worldwide are experiencing environmental changes due to anthropogenic pressure and climate warming. Here, we compiled long-term data of coregonine catches from 27 lakes from three continents in the northern hemisphere. Declines in catch were observed in 67% of the lakes during the first two decades of the 21 st century, with a significant trend (p-value<0.05) in 44% of the cases. An analysis to determine whether trends are globally linked to environmental conditions and specific lake attributes was carried out on 26 lakes for the period 2000–2019. Several local declines in catches had already been documented in the literature and are likely to be due to local forcing such as nutrients, species invasions and changes in fishing practices. Nevertheless, on a global scale, our results indicate that lakes, which exhibited a significant decrease in catch were larger and more nutrient-poor than other lakes. The rate of change in catches appeared to be related to the trophic state of the lake. The specific effect of warming is difficult to determine during the studied period. When warming occurred outside the period of egg incubation, decreasing trends were more frequently observed in nutrient-poor than in mesotrophic lakes. In conclusion, our findings suggest that achieving oligo- or ultraoligotrophic conditions, as required in developed countries to control phytoplankton blooms and enhance water quality, could pose significant challenges for future management of coregonine fisheries.

International Journal of Limnology↗
USGS2025

Archive of morphological data for the Coregonus artedi species complex of the Great Lakes, Lake Nipigon and Great Slave Lake

This publication is a user guide for an archive of morphological data recorded by various authors from North American ciscoes of the Coregonus artedi species complex (subfamily Coregoninae ). The archive is accessible from the Great Lakes Fishery Commission’s (GLFC) server, is open access, and contains data for the Laurentian Great Lakes; Lake Nipigon, Ontario; and Great Slave Lake, Northwest Territories. The archive comprises morphometrics and meristics (together metrics) for 6,700 individual Cisco of which 1,400 are accompanied by images. In addition, the archive contains metrics presented as arrays by W. N. Koelz, Coregonid fishes of the Great Lakes, Bulletin of the U.S. Bureau of Fisheries 43(2):297-643, which were based on 10,000 individuals. Spreadsheets in the Metrics folder of the archive are divided broadly into Contemporary and Historical subfolders and the Contemporary subfolder is further divided into Cisco Monograph and Extra Monograph subfolders to encourage statistical assessment of findings in GLFC Miscellaneous Publication 2023. The Images folder is organized into subfolders by lake. Tables in this user guide allow for quick determination of the availability of data by lake, subspecies, author, and year.

Laurentian↗
USGS2024

Historical and morphological evidence for a remnant population of Lake Erie cisco Coregonus artedi (albus) in Crystal Lake, Pennsylvania

The cisco ( Coregonus artedi ) population in Crystal Lake, Pennsylvania, is of great scientific interest as it either originated from Lake Erie or Lake Ontario. Cisco in Lake Erie once supported the largest freshwater fishery in the world, but populations were extirpated by 1960. We conducted a morphological analysis of Crystal Lake cisco to determine whether it was consistent with a distinctive Lake Erie form ( albus ), which was also historically documented, albeit rarely, in western Lake Ontario. Using principal component analysis, we compared eight morphometric ratios and one meristic from our Crystal Lake cisco collection with historical and contemporary collections of cisco from Lakes Erie and Ontario. Maximum likelihood ellipse overlaps between Crystal Lake cisco and presumed albus (the dominant Lake Erie form prior to extirpation) collections averaged 54%. For all groups, the greatest morphological overlap (73.9%) occurred between Crystal Lake and 1957 Lake Erie cisco, which only differed from Crystal Lake cisco in dorsal fin length. Alternatively, overlap between Crystal Lake cisco and all other Lake Ontario collections averaged 3.2%. Our results demonstrate that Crystal Lake cisco are likely an albus form; furthermore, historical documentation and our morphological results suggest a Lake Erie origin. Substantial overlap between Crystal Lake cisco and Lake Ontario albus collected in 1917 is likely explained by continuous entrainment of Lake Erie larvae into Lake Ontario. We suspect this created an albus metapopulation spanning Lakes Erie and Ontario, yet albus are no longer observed in either lake today.

Pennsylvania↗
USGS2024

Declines and shifts in morphological diversity of ciscoes (Coregonus spp.) in lakes Huron and Michigan, 1917–2019

Ciscoes ( Coregonus spp . ) were historically abundant and ecologically important in Laurentian Great Lakes ecosystems. Despite well-documented declines in their abundance and taxonomic diversity, declines in morphological diversity remain understudied. This knowledge gap is especially pertinent for lakes Michigan and Huron, which have each lost six of eight historical species. Improved understanding of historical and contemporary morphological diversity of Great Lakes ciscoes can inform ongoing restoration efforts and further elucidate the factors that contributed to declines. Our goal was to characterize shifts in morphological diversity of ciscoes in lakes Michigan and Huron over a century (1917–2019). We analyzed size-corrected morphometric and meristic measurements from three periods: Early (1917–1923), Middle (1950–1972), and Contemporary (2015–2019). We then identified morphologically distinct clusters while remaining agnostic to species identifications. We found that morphological diversity and the number of distinct clusters declined over time. We then leveraged species identifications to highlight key species losses and examine morphological shifts among extant species. Our findings provide insights into the historical and contemporary morphological diversity of ciscoes and will inform restoration efforts.

Lake Huron, Lake Michigan↗
USGS2024

Impacts of artificial rearing on cisco Coregonus artedi morphology, including pugheadedness

Cisco ( Coregonus artedi Lesueur, 1818) in the Laurentian Great Lakes declined throughout the 19th and 20th centuries. Managers are attempting to restore Great Lakes cisco and other coregonines using multiple approaches, including stocking. A potential obstacle to these efforts is that artificially reared coregonines can display deformities and morphological differences compared to wild fish, but the impacts of artificial rearing on cisco morphology are not well understood. We compared morphologies of wild cisco to their artificially reared offspring, including one family that was exposed to three rearing temperature treatments. We found that artificially reared cisco had smaller eyes, shallower bodies, fewer gill rakers, and longer paired fins than their wild parents. We also found that artificially reared cisco were pugheaded, and this result held for another cisco population and rearing facility. Across the temperature treatments we tested, rearing temperatures did not impact the degree of pugheadedness or other morphological differences. Our results have important implications for coregonine restoration efforts. Future work should evaluate whether morphological differences that arise through artificial rearing affect cisco fitness in the wild.

Canadian Journal of Zoology↗
USGS2023

Morphological differences between wild and hatchery-reared Bloater (Coregonus hoyi) from Lake Michigan, USA

Coregonines (ciscoes and whitefishes) are economically, ecologically, and culturally important fishes that are distributed throughout the Northern Hemisphere. In the Laurentian Great Lakes, coregonines declined throughout the 19th and 20th centuries, and managers have prioritized their restoration. A key restoration tool is reintroduction via stocking. However, hatchery-reared coregonines can display different morphologies than wild fish, which could affect their fitness. Unfortunately, our understanding of these differences is limited because previous work did not adequately remove allometric effects in morphological analyses. We compared morphologies between wild and hatchery-reared Bloater ( Coregonus hoyi ) from the same stock using appropriate size corrections. Hatchery-reared fish had shorter heads, shorter dorsal fins, and shallower bodies than wild fish. Moreover, some characters differed across wild fish collections. Our results improve our understanding of how artificial rearing can impact coregonine morphology, and we recommend future studies on what causes these differences and whether they impact fitness.

Fisheries Management and Ecology↗
USGS2023

Comparison of traditional and geometric morphometrics using Lake Huron ciscoes of the Coregonus artedi complex

Here we determine how traditional morphometrics (TM) compares with geometric morphometrics (GM) in discriminating among morphologies of four forms of ciscoes of the Coregonus artedi complex collected from Lake Huron. One of the forms comprised two groups of the same deepwater cisco separated by capture depth, whereas the other three forms were shallow-water ciscoes. Our three groups of shallow-water ciscoes were better separated (3% versus 19% overlap) in Principle Component Analysis (PCA) with TM data than with GM data incorporating semilandmarks (evenly spaced nonhomologous landmarks used to bridge between widely separated homologous landmarks). Our two deepwater cisco groups, comprising a putatively single form collected from different depths, separated more in PCAs with GM data (33% overlap) than in PCAs with TM data (66% overlap), an anomaly caused by greater decompression of the swimbladder and deformation of the body wall in the group captured at greater depths. Separation of the two deepwater cisco groups captured at different depths was not affected by the removal of semilandmarks. Assignment of forms using canonical variate analysis (CVA) accurately assigned 86% of individuals using TM data, 98% of individuals using GM data incorporating semilandmarks, and 100% of individuals using GM data without semilandmarks. However, we considered assignments from the same form of deepwater cisco into separate groups as misassignments resulting from different capture depths, which reduced the accuracy of assignments with GM data to 66% with semilandmarks. Our study implies that TM will continue to have an important role in morphological discrimination within Coregonus and other fishes similarly shaped.

Lake Huron↗
USGS2022

Distributions of Cisco (Coregonus artedi) in the upper Great Lakes in the mid-twentieth century, when populations were in decline

The restoration of the once abundant Cisco ( Coregonus artedi ) is a management interest across the Laurentian Great Lakes. To inform the restoration, we (1) described historical distributions of Cisco and (2) explored whether non-indigenous Rainbow Smelt ( Osmerus mordax ) and Alewife ( Alosa pseudoharengus ) played a role in the decline of Cisco populations across the upper Great Lakes (i.e., Lakes Superior, Michigan, and Huron). Our source data were collected from fishery-independent surveys conducted by the U.S. Fish and Wildlife Service’s research vessel R/V Cisco in 1952–1962. By analyzing data collected by gill-net surveys, we confirmed the importance of embayment and shallow-water habitats to Cisco. We found that Cisco was abundant in Whitefish Bay and Keweenaw Bay, Lake Superior, and in Green Bay, Lake Michigan, but we also found a sign of Cisco extirpation in Saginaw Bay, Lake Huron. Our results also showed that Ciscoes generally stayed in waters <80 m in bottom depth throughout the year. However, a substantial number of Ciscoes stayed in very deep waters (>150 m in bottom depth) in summer and fall in Lake Michigan, although we cannot exclude the possibility that these Ciscoes had hybridized with the other Coregonus species. By comparing complementary data collected from bottom-trawl surveys, we concluded that the spatiotemporal overlap between Rainbow Smelt and Cisco likely occurred across the upper Great Lakes throughout 1952–1962. These data were consistent with the hypothesis that Rainbow Smelt played a role in the decline of Cisco populations across the upper Great Lakes in the period. We also found that the spatiotemporal overlap between Alewife and Cisco likely occurred only in Saginaw Bay in fall 1956 and in Lake Michigan after 1960. Thus, any potential recovery of Cisco after the 1950s could have been inhibited by Alewife in Lakes Michigan and Huron.

Lake Huron, Lake Michigan, Lake Superior↗
USGS2021

Replacement of the typical artedi form of Coregonus artedi in Lake Huron by endemic shallow-water Ciscoes, including putative hybrids

Various ecomorphs of shallow-water Cisco Coregonus artedi were the dominant fish planktivores in each of the Great Lakes until invasive species and over fishing resulted in extirpations and extinctions. In this paper we describe the present morphological diversity and distribution of shallow-water Ciscoes in each of Lake Huron’s three basins: the main basin, Georgian Bay, and North Channel. Typical artedi , a formerly widespread ecomorph, which had supported the lake’s largest fishery, appears to have been extirpated from all three basins. Three types of shorthead ciscoes, a recently described and variable ecomorph, were extant. One type was morphologically robust and abundant along the north rim of the lake. The second type was large bodied, terete, short finned, and collected at only one location in the main basin. The third type consisted of putative shorthead cisco × typical artedi hybrids, which were widespread in Georgian Bay and the North Channel. Only the putative hybrids were regularly collected in midwater trawls, suggesting they were more-pelagic, which we attribute to an inferred partial ancestry with typical artedi . The putative shorthead cisco × typical artedi hybrids of Georgian Bay and the North Channel have replaced typical artedi to some degree, while shorthead ciscoes in the main basin, though possibly more abundant now than in the past, have not measurably replaced typical artedi . Even with the apparent extirpation of typical artedi , Lake Huron has a greater diversity of shallow-water Ciscoes than any of the other Great Lakes, which we attribute to its more-complex topography.

Lake Huron↗
USGS2020

Describing historical habitat use of a native fish-Cisco (Coregonus artedi)-In Lake Michigan between 1930 and 1932

With the global-scale loss of biodiversity, current restoration programs have been often required as part of conservation plans for species richness and ecosystem integrity. The restoration of pelagic-oriented cisco ( Coregonus artedi ) has been an interest of Lake Michigan managers because it may increase the diversity and resilience of the fish assemblages and conserve the integrity of the ecosystems in a changing environment. To inform restoration, we described historical habitat use of cisco by analyzing a unique fishery-independent dataset collected in 1930–1932 by the U.S. Bureau of Fisheries’ first research vessel Fulmar and a commercial catch dataset reported by the State of Michigan in the same period, both based on gear fished on the bottom. Our results confirmed that the two major embayments, Green Bay and Grand Traverse Bay, were important habitats for cisco and suggest that cisco could complete the entire lifecycle within either of the Bays as there was no lack of summer feeding and fall spawning habitats. Seasonally, our results showed that cisco stayed in nearshore waters in spring, migrated to offshore waters in summer, and then migrated back to nearshore waters in fall for spawning. The results also suggest that in summer, most ciscoes were in waters with bottom depths of 20–70 m, but the highest cisco density occurred in waters with a bottom depth around 40 m. We highlight the importance of embayment habitats to cisco restoration and the seasonal migration pattern of cisco identified in this study, which suggests that a restored cisco population can diversify the food web by occupying different habitats from the exotic fishes that now dominate the pelagic waters of Lake Michigan.

Lake Michigan↗
USGS2018

Assessing the influence of watershed characteristics on chlorophyll a in waterbodies at global and regional scales

Prediction of primary production of lentic water bodies (i.e., lakes and reservoirs) is valuable to researchers and resource managers alike, but is very rarely done at the global scale. With the development of remote sensing technologies, it is now feasible to gather large amounts of data across the world, including understudied and remote regions. To determine which factors were most important in explaining the variation of chlorophyll a (Chl- a ), an indicator of primary production in water bodies, at global and regional scales, we first developed a geospatial database of 227 water bodies and watersheds with corresponding Chl- a , nutrient, hydrogeomorphic, and climate data. Then we used a generalized additive modeling approach and developed model selection criteria to select models that most parsimoniously related Chl- a to predictor variables for all 227 water bodies and for 51 lakes in the Laurentian Great Lakes region in the data set. Our best global model contained two hydrogeomorphic variables (water body surface area and the ratio of watershed to water body surface area) and a climate variable (average temperature in the warmest model selection criteria to select models that most parsimoniously related Chl- a to predictor variables quarter) and explained ~ 30% of variation in Chl- a . Our regional model contained one hydrogeomorphic variable (flow accumulation) and the same climate variable, but explained substantially more variation (58%). Our results indicate that a regional approach to watershed modeling may be more informative to predicting Chl- a , and that nearly a third of global variability in Chl- a may be explained using hydrogeomorphic and climate variables.

Inland Waters↗
USGS2017

Assessing the global distribution of river fisheries harvest: A systematic map protocol

Background Although surface freshwater comprises < 0.01% of the total water volume of earth, freshwater inland capture fisheries and aquaculture represent 40% of the global reported finfish harvest. While the social, economic, and ecological importance of inland fish and fisheries is difficult to overstate, they are often undervalued and underappreciated. Accurate information about these highly dispersed fisheries is inherently difficult to acquire, often unreported, and not collected in a standardized format globally. A standardized river fishery database is needed for managing aquatic systems as well as for defining relevant development policies. Here, we describe our methodology to search, identify, and describe available river fisheries information to create a harmonized global database of river fisheries harvest. This database will provide the first global database of spatially and temporally explicit river fisheries data. The database can be used to identify locations, hotspots of data collection, and gaps in existing knowledge and will be especially important to inform studies and management at larger spatial scales (i.e., watershed, regional, or global scales). This database will also be critical for developing fish biomass models for rivers, which can provide managers with information critical for decision-making, such as improved valuation methods for river fish and fisheries. Methods This systematic map protocol describes the methodology to search, identify, and describe available information on river fish and fisheries across the globe. We define river fisheries as “both capture and aquaculture of river finfish species for food, income, or recreation”. River fish species are those finfish that live part, or all of their lives in rivers. The searches will be conducted for the period from 1950 to present using bibliographic databases and grey literature sources. To identify relevant evidence, pre-defined inclusion and exclusion criteria will be used to screen articles at title, abstract, and full text. A searchable database containing extracted meta-data from relevant included studies will be developed and presented as a geodatabase. The final systematic map will consist of a descriptive narrative report of the distribution and content of river fish literature including a geodatabase of available information.

Environmental Evidence↗
USGS2017

Evaluating stocking efficacy in an ecosystem undergoing oligotrophication

Oligotrophication has negatively affected fisheries production in many freshwater ecosystems and could conceivably reduce the efficacy of stockings used to enhance fisheries. In Lake Michigan, offshore oligotrophication has occurred since the 1970s, owing to reductions in total phosphorus (TP) inputs and nearshore sequestration of TP by nonindigenous dreissenid mussels. We evaluated simultaneous effects of stock enhancement and oligotrophication on salmonine species (Chinook salmon Oncorhynchus tshawytscha , lake trout Salvelinus namaycush , and steelhead O. mykiss ) that support valuable recreational fisheries. We employed a novel application of an Ecopath with Ecosim model by conducting a full factorial simulation experiment. Our design included multiple levels of salmonine stocking, consumption by invasive quagga mussels ( Dreissena bugensis ), and TP that were informed by manager interests. Under all levels of TP and quagga mussel consumption, our results showed that stock enhancement could still increase salmonine biomass, but positive responses were stronger for lake trout and steelhead than Chinook salmon. Simulations showed that quagga mussel consumption has deleterious effects on pelagic-oriented prey fishes and Chinook salmon, which feed almost exclusively on the pelagic-oriented alewife ( Alosa pseudoharengus ). In summary, results from our simulation experiment suggested that lake trout and steelhead are better suited to the current ecosystem than Chinook salmon, and therefore, stock enhancement provides the highest gains for these two species. Furthermore, simulated biomass of all recreational salmonine species increased with increasing TP, indicating the need for managers to consider how potential future oligotrophication will limit the carrying capacity of salmonine biomass in Lake Michigan

Lake Michigan↗
USGS2017

Climate change as a long-term stressor for the fisheries of the Laurentian Great Lakes of North America

The Laurentian Great Lakes of North America provide valuable ecosystem services, including fisheries, to the surrounding population. Given the prevalence of other anthropogenic stressors that have historically affected the fisheries of the Great Lakes (e.g., eutrophication, invasive species, overfishing), climate change is often viewed as a long-term stressor and, subsequently, may not always be prioritized by managers and researchers. However, climate change has the potential to negatively affect fish and fisheries in the Great Lakes through its influence on habitat. In this paper, we (1) summarize projected changes in climate and fish habitat in the Great Lakes; (2) summarize fish responses to climate change in the Great Lakes; (3) describe key interactions between climate change and other stressors relevant to Great Lakes fish, and (4) summarize how climate change can be incorporated into fisheries management. In general, fish habitat is projected to be characterized by warmer temperatures throughout the water column, less ice cover, longer periods of stratification, and more frequent and widespread periods of bottom hypoxia in productive areas of the Great Lakes. Based solely on thermal habitat, fish populations theoretically could experience prolonged optimal growth environment within a changing climate, however, models that assess physical habitat influences at specific life stages convey a more complex picture. Looking at specific interactions with other stressors, climate change may exacerbate the negative impacts of both eutrophication and invasive species for fish habitat in the Great Lakes. Although expanding monitoring and research to consider climate change interactions with currently studied stressors, may offer managers the best opportunity to keep the valuable Great Lakes fisheries sustainable, this expansion is globally applicable for large lake ecosystem dealing with multiple stressors in the face of continued human-driven changes.

Great Lakes↗
USGS2017

Grand challenges in the management and conservation of North American inland fishes and fisheries

Even with long-standing management and extensive science support, North American inland fish and fisheries still face many conservation and management challenges. We used a grand challenges approach to identify critical roadblocks that if removed would help solve important problems in the management and long-term conservation of North American inland fish and fisheries. We identified seven grand challenges within three themes (valuation, governance, and externalities) and 34 research needs and management actions. The major themes identified are to (1) raise awareness of diverse values associated with inland fish and fisheries, (2) govern inland fish and fisheries to satisfy multiple use and conservation objectives, and (3) ensure productive inland fisheries given nonfishing sector externalities. Addressing these grand challenges will help the broader community understand the diverse values of inland fish and fisheries, promote open forums for engagement of diverse stakeholders in fisheries management, and better integrate the inland fish sector into the greater water and land use policy process.

Fisheries↗
USGS2017

Inland fisheries – Invisible but integral to the UN Sustainable Development Agenda for ending poverty by 2030

The United Nations’ (UN) 2030 Agenda for Sustainable Development defines the formidable challenge of integrating historically separate economic, social, and environmental goals into a unified ‘plan of action for people, planet, and prosperity.’ We highlight the substantial contribution inland fisheries can make towards preventing increased poverty and, in some cases, alleviating poverty (i.e. addressing Sustainable Development Goal [SDG] 1: No Poverty) as an opportunity to inform the next set of development agendas and their associated budgets and priorities. Overlooking the contribution of inland fisheries to poverty prevention and alleviation may undermine the capacity to successfully meet the development goals, especially in rural communities in Low-Income Food-Deficit countries. Inland fisheries are essential for food and economic security as the vast majority are small-scale operations or subsistence, predominantly used by poorer groups. Protecting inland fisheries from diverse threats from other water users and associated sectors requires robust, multi-sectoral, and multinational policies that can be brought about by global initiatives like the SDGs. Without such protection, their vital contribution towards sustainable livelihoods and poverty issues becomes uncertain. Further, integrating inland fisheries into sustainable development frameworks strengthens the likelihood of achieving the UN Agenda for Sustainable Development. In this perspective article, we posit that including inland fisheries in national policy statements and programs can prove beneficial to promoting economic and social growth for the poor, preventing further poverty, and achieving SDG 1 and other SDG targets, especially those related to food security.

Global Environmental Change↗