Xuefei Chen | Geology Reports

USGS2026

CoralCache: A virtual coral core repository for transparent and reproducible annual growth rate analyses

As science fields enter the Big Data revolution, open-access repositories are essential for addressing larger-scale questions than are possible for single researchers by making data findable, accessible, interoperable, and reusable (FAIR). Furthermore, transparent data and code are increasingly important for reproducible research, especially for data types that inherently require subjective human interpretations. These ideas are applicable to coral sclerochronology, as the field has long been characterized by individual researchers collecting and analyzing coral skeletal cores from their study sites without substantial data sharing or archiving of the core images to meet FAIR principles. Here, we present CoralCache, a virtual coral core repository that not only archives image datasets (i.e., digitized X-rays and computed tomography scans), but also observer interpretations of the density banding patterns. CoralCache is linked to a graphical user interface, CoralCT, which together offer a way forward for coral growth rate analysis that is reproducible and collaborative. The data organization systems presented here could also be readily applied to related archives such as tree rings or bivalve shells.

Earth System Science Data↗

USGS2024

International Ocean Discovery Program Expedition 389 preliminary report: Hawaiian drowned reefs

Our understanding of the mechanisms controlling eustatic sea level and global climate changes has been hampered by a lack of appropriate fossil coral records over the last 500 ky, particularly into and out of the glacial periods. This problem was addressed by International Ocean Discovery Program Expedition 389 by drilling a unique succession of Hawaiian drowned coral reefs now at 110–1300 meters below sea level (mbsl). The four objectives are to investigate (1) the timing, rate, and amplitude of sea level variability to examine cryosphere and geophysical processes, including the assessment of abrupt sea level change events; (2) the processes that determine changes in mean and high-frequency (seasonal–interannual) climate variability from times with different boundary conditions (e.g., ice sheet size, p CO 2 , and solar forcing); (3) the response of coral reef systems to abrupt sea level and climate changes; and (4) the variation through space and time of the subsidence and the volcanic evolution of the island. To achieve these objectives, 35 holes at 16 sites ranging 131.9–1241.8 mbsl were drilled during the expedition. A total of 425 m of core was recovered, comprising reef (83%) and volcanic (17%) material. Average core recoveries were 66%, with numerous intervals characterized by very well preserved mixtures of coralgal and microbialite frameworks with recoveries >90%. Some science-critical shallow sites were not drilled due to a failure to secure permits to operate in Hawaiian state waters. Furthermore, apart from one site the target penetration depths were not achieved. Preliminary radiometric dates indicate that the recovered reef deposits are from 488 to 13 ka in age. The Onshore Science Party took place in February 2024. Cores were CT and hyperspectral scanned and described. Standard measurements were made, and samples were taken for postcruise research. Preliminary assessment of the age and quality of the reef and basalt cores suggest that many of the expedition objectives will be met.

Hawaii↗