Geology topics

Virginia I. Rich

Publications and source records attributed to Virginia I. Rich.

3 recordsLinked to original sources

USGS2025

STREAMS guidelines: Standards for technical reporting in environmental and host-associated microbiome studies

The interdisciplinary nature of microbiome research, coupled with the generation of complex multi-omics data, makes knowledge sharing challenging. The Strengthening the Organization and Reporting of Microbiome Studies (STORMS) guidelines provide a checklist for the reporting of study information, experimental design and analytical methods within a scientific manuscript on human microbiome research. Here, in this Consensus Statement, we present the standards for technical reporting in environmental and host-associated microbiome studies (STREAMS) guidelines. The guidelines expand on STORMS and include 67 items to support the reporting and review of environmental (for example, terrestrial, aquatic, atmospheric and engineered), synthetic and non-human host-associated microbiome studies in a standardized and machine-actionable manner. Based on input from 248 researchers spanning 28 countries, we provide detailed guidance, including comparisons with STORMS, and case studies that demonstrate the usage of the STREAMS guidelines. STREAMS, like STORMS, will be a living community resource updated by the Consortium with consensus-building input of the broader community.

Nature Microbiology↗

USGS2025

Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands

Current estimates of wetland contributions to the global methane budget carry high uncertainty, particularly in accurately predicting emissions from high methane-emitting wetlands. Microorganisms drive methane cycling, but little is known about their conservation across wetlands. To address this, we integrate 16S rRNA amplicon datasets, metagenomes, metatranscriptomes, and annual methane flux data across 9 wetlands, creating the Multi-Omics for Understanding Climate Change (MUCC) v2.0.0 database. This resource is used to link microbiome composition to function and methane emissions, focusing on methane-cycling microbes and the networks driving carbon decomposition. We identify eight methane-cycling genera shared across wetlands and show wetland-specific metabolic interactions in marshes, revealing low connections between methanogens and methanotrophs in high-emitting wetlands. Methanoregula emerged as a hub methanogen across networks and is a strong predictor of methane flux. In these wetlands it also displays the functional potential for methylotrophic methanogenesis, highlighting the importance of this pathway in these ecosystems. Collectively, our findings illuminate trends between microbial decomposition networks and methane flux while providing an extensive publicly available database to advance future wetland research.

Nature Communications↗

USGS2024

Controls on stable methane isotope signatures in northern peatlands and potential shifts in signatures under permafrost thaw scenarios

Northern peatlands are a globally significant source of methane (CH 4 ), and emissions are projected to increase due to warming and permafrost loss. Understanding the microbial mechanisms behind patterns in CH 4 production in these systems will be key to predicting annual emissions changes, with stable carbon isotopes (δ 13 C-CH 4 ) being a powerful tool for characterizing these drivers. Given that δ 13 C signatures of CH 4 are used in top-down atmospheric inversion models to partition sources, our ability to model CH 4 production pathways and associated δ 13 C-CH 4 signatures in peatland types impacted by a changing climate is critical. We sought to characterize the role of environmental conditions, including both hydrologic and vegetation patterns associated with permafrost thaw, on δ 13 C-CH 4 signatures from a diverse set of high-latitude peatlands. We measured porewater and emitted CH 4 stable isotopes, pH, and vegetation composition from five boreal-Arctic peatlands. Porewater δ 13 C-CH 4 was strongly associated with peatland type, with δ 13 C enriched values obtained from more minerotrophic fens (-61.2 ± 9.1‰) compared to permafrost-free bogs (-74.1 ± 9.4‰) and raised permafrost bogs (-81.6 ± 11.5‰). Variation in porewater δ 13 C-CH 4 was best explained by sedge cover, CH 4 concentration, and the interactive effect of peatland type and pH ( r 2 = 0.50, p < 0.001). Emitted δ 13 C-CH 4 varied greatly but was positively correlated with porewater δ 13 C-CH 4 , suggesting that porewater data can be used to predict changing emissions signatures from these systems. We calculated a weighted mean mixed atmospheric CH 4 signature for northern peatlands of -65.3 ± 7‰ and show that this signature is more sensitive to landscape drying (4 to 10 % depletion in δ 13 C) than wetting (1.5 to 5% enrichment in δ 13 C) under permafrost thaw scenarios. Our results suggest northern peatland δ 13 C-CH 4 signatures are likely to shift in the future which has important implications for source partitioning in atmospheric inversion models.

Journal of Geophysical Research: Biogeosciences↗