Geology topics

Tara Chestnut

Publications and source records attributed to Tara Chestnut.

7 recordsLinked to original sources

USGS2025

Pan-amphibia distribution of the fungal parasite Batrachochytrium dendrobatidis varies with species and temperature

Batrachochytrium dendrobatidis (Bd) is a globally distributed fungal pathogen of amphibians that has contributed to one of the largest disease-related biodiversity losses in wildlife. Bd is regularly viewed through the lens of a global wildlife epizootic because the spread of highly virulent genetic lineages has resulted in well-documented declines and extinctions of multiple amphibian species. However, the current state of Bd occurrence, host range, host impacts, and ecological drivers remains poorly understood outside of the most negatively affected amphibian species and regions. Our objective was to describe the macroecology of Bd occurrence and infection intensity on caudates (salamanders) across the United States and to compare these patterns with better-studied anurans (frogs and toads). We collected swabs from 11,183 amphibians at 609 sites from 54 species across the United States from 2015 to 2017. We analyzed the prevalence and intensity of Bd infection jointly using a Bayesian hurdle model with covariates of site-level temperature and precipitation, as well as individual characteristics and species identification. Bd was distributed widely across sites and species sampled across the spatial extent of the conterminous United States. We found that Bd prevalence and intensity were most strongly influenced by temperature in the month preceding sampling and by differences among taxon groups. We estimated that temperature had a strong and nonlinear influence on both Bd prevalence and intensity with peak infection at intermediate temperatures and lower infection at low and high temperatures. We found Caudate hosts tended to have higher prevalence than Anuran hosts and Anuran hosts tended to have higher intensity at optimal temperatures for Bd infection. Our findings suggest that Bd has an amphibian-wide host range, temperature gradients exert a strong influence on Bd, and enzootic transmission likely encompasses a much larger spatial and species distribution than previously recognized across North America.

conterminous United States↗

USGS2025

White-nose syndrome surveillance and bat monitoring activities in North Coast and Cascades Network parks 2016–2024

Pseudogymnoascus destructans (Pd), the causative agent of white-nose syndrome (WNS) in bats, has caused serious declines in bat populations across North America. We conducted WNS surveillance in five different park units in the North Coast and Cascades Network (NCCN) from 2016 to 2024, following the initial detection of Pd and WNS in Washington State in 2016. We captured and swabbed bats, swabbed roost materials, and collected guano and tested these samples for Pd DNA using qPCR. We confirmed WNS through histopathology of tissue samples and carcasses. We detected Pd at five locations in Mount Rainier National Park, starting in 2017. We confirmed WNS at four of these locations, with the first clinical signs detected in 2022. We detected Pd for the first time in Olympic and North Cascades National Parks in 2024. From these efforts, we generated information that can be compared to other datasets, helping us advance our knowledge of WNS/Pd epidemiology. We also conducted three field and laboratory-based experiments to inform early detection/rapid response (EDRR) planning. The first was a field experiment using non-infective Pd DNA to evaluate the rate of DNA degradation and the probability of detecting Pd DNA in the field. Experimental degradation rates for Pd DNA ranged from 1.6% to 8.2% and were lower in protected sites. The second was a laboratory-based experiment to understand Pd growth on four different substrates. We detected increasing levels of Pd in autoclaved guano and in plywood, suggesting these substrates may be environmental reservoirs. Pd remained stable in fresh guano but in soil it decreased, suggesting microbial interactions that may influence Pd growth in these substrates. We also collected wood shavings from a Pd positive bat box in June and August to evaluate viable Pd persistence in wood in a summer roost. Despite the characterization that Pd required cold conditions to persist, viable Pd was present in wood shavings collected during the summer season. Finally, we evaluated the National White-Nose Syndrome Decontamination Protocol through experiments. We found that ethanol was not effective as a sporicidal agent in any of the concentrations we tested and that a 1:10 dilution of bleach did not kill Pd spores, though higher concentrations did. These findings resulted in changes to the national protocol.

Oregon, Washington↗

USGS2023

Estimating northern spotted owl (Strix occidentalis caurina) pair detection probabilities based on call-back surveys associated with long-term mark-recapture studies, 1993–2018

The northern spotted owl ( Strix occidentalis caurina ; hereinafter NSO) was listed as “threatened” under the Endangered Species Act in 1990 and population declines have continued since that listing. Given the species’ protected status, any proposed activities on Federal lands that might impact NSO require consultation with U.S. Fish and Wildlife Service and part of that consultation often includes surveys to determine presence and occupancy status of the species in the proposed activity area. The objective of this report is to present study-area specific estimates of the probability of detection for NSO pairs from twelve 2-week seasonal survey periods using data from a recent range-wide meta-analysis. These estimates were a by-product of pair occupancy modeling but might provide insight into potential changes in the effect of the invasive barred owl on NSO detection rates. We used two-species multi-season occupancy models to estimate the probability of detection for NSOs on each of 11 study areas for each 2-week survey period and relative to the range-wide effect of barred owl presence or absence. Detection probabilities within the season generally increased from the earliest surveys in March through mid-season, decreasing again in the late season on five study areas. For three other study areas, detection rates were highest during the earliest survey periods in late March or early April. Estimates of cumulative seasonal detection of NSO (across a maximum of six within-season surveys) were less than 0.90 when barred owls (BO) were present on all but one study area, regardless of when surveys were conducted within a season. However, despite low detection rates, the probability that a territory was occupied when an NSO pair was not detected over six within-season surveys was also very low. When BO are not present on a territory, a six-survey protocol had a high probability of detecting an NSO pair at least once during the season on all study areas, except for the very lowest per-survey estimates. Conducting most surveys earlier in the season, when the probability of detecting pairs is highest (through May on most areas) could improve seasonal detection rates. However, alternative methods of population monitoring—such as the use of passive acoustic recorders—may be needed to continue monitoring NSO for research and management.

California, Oregon, Washington↗

USGS2021

Range-wide declines of northern spotted owl populations in the Pacific Northwest: A meta-analysis

The northern spotted owl ( Strix occidentalis caurina ) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls ( Strix varia ), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted owl territories. We found that northern spotted owl populations experienced significant declines of 6–9% annually on 6 study areas and 2–5% annually on 5 other study areas. Annual declines translated to ≤35% of the populations remaining on 7 study areas since 1995. Barred owl presence on spotted owl territories was the primary factor negatively affecting apparent survival, recruitment, and ultimately, rates of population change. Analysis of spotted and barred owl detections in an occupancy framework corroborated the capture-recapture analyses with barred owl presence increasing territorial extinction and decreasing territorial colonization of spotted owls. While landscape habitat components reduced the effect of barred owls on these rates of decline, they did not reverse the negative trend. Our analyses indicated that northern spotted owl populations potentially face extirpation if the negative effects of barred owls are not ameliorated while maintaining northern spotted owl habitat across their range.

California, Oregon, Washington↗

USGS2020

Batrachochytrium salamandrivorans (Bsal) not detected in an intensive survey of wild North American amphibians

The salamander chytrid fungus (Batrachochytrium salamandrivorans [Bsal]) is causing massive mortality of salamanders in Europe. The potential for spread via international trade into North America and the high diversity of salamanders has catalyzed concern about Bsal in the U.S. Surveillance programs for invading pathogens must initially meet challenges that include low rates of occurrence on the landscape, low prevalence at a site, and imperfect detection of the diagnostic tests. We implemented a large-scale survey to determine if Bsal was present in North America designed to target taxa and localities where Bsal was determined highest risk to be present based on species susceptibility and geography. Our analysis included a Bayesian model to estimate the probability of occurrence of Bsal given our prior knowledge of the occurrence and prevalence of the pathogen. We failed to detect Bsal in any of 11,189 samples from 594 sites in 223 counties within 35 U.S. states and one site in Mexico. Our modeling indicates that Bsal is highly unlikely to occur within wild amphibians in the U.S. and suggests that the best proactive response is to continue mitigation efforts against the introduction and establishment of the disease and to develop plans to reduce impacts should Bsal establish.

Continental United States↗

USGS2019

Barred Owls reduce occupancy and breeding propensity of Northern Spotted Owl in a Washington old-growth forest

Protected lands like national parks are important refuges for threatened and endangered species as environmental pressures on wildlife and their habitats increase. The Northern Spotted Owl ( Strix occidentalis caurina ), a species designated as threatened under the Endangered Species Act, occurs on public lands throughout the western United States including Mount Rainier National Park (MRNP), Washington. With virtually no history of timber harvest or large forest disturbance within MRNP boundaries since the park’s creation in 1899, MRNP provides an ideal place to evaluate potential impacts of climate change and invasive Barred Owls ( Strix varia ) on the Northern Spotted Owl. We used a multi-state, multi-season occupancy model to investigate how Northern Spotted Owl occupancy dynamics and breeding propensity are related to the presence of Barred Owls, local and regional weather, and habitat characteristics at MRNP from 1997 to 2016. Historical occupancy of Northern Spotted Owl breeding territories in MRNP has declined by 50% in the last 20 yr, and territory occupancy by breeding Northern Spotted Owls also decreased, reaching a low of 25% in 2016. Occupancy rates were higher on territories with steeper terrain and breeding rates were lower when Barred Owls were detected within historical territories. Our results also indicated that breeding propensity was higher when early nesting season temperatures during March and April were higher. In addition, the ability to detect breeding Northern Spotted Owls decreased when Barred Owls were present in the territory. Habitat variables from LiDAR were not correlated with Northern Spotted Owl occupancy dynamics, likely reflecting the dominance of old-growth forest in this protected park. This study illustrates the strong relationship between Barred Owls and Northern Spotted Owl demographics and breeding site selection in a landscape where habitat loss by timber harvest and fire has not occurred.

Washington↗

USGS2017

Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA

Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has not been tested on a spatially or temporally robust number of pollen samples. Here, we compare pollen identification results derived from light microscopy and DNA sequencing techniques with samples collected from honey bee colonies embedded within a gradient of intensive agricultural landscapes in the Northern Great Plains throughout the 2010–2011 growing seasons. We demonstrate that at all taxonomic levels, DNA sequencing was able to discern a greater number of taxa, and was particularly useful for the identification of infrequently detected species. Importantly, substantial phenological overlap did occur for commonly detected taxa using either technique, suggesting that DNA sequencing is an appropriate, and enhancing, substitutive technique for accurately capturing the breadth of bee-collected species of pollen present across agricultural landscapes. We also show that honey bees located in high and low intensity agricultural settings forage on dissimilar plants, though with overlap of the most abundantly collected pollen taxa. We highlight practical applications of utilizing sequencing technology, including addressing ecological issues surrounding land use, climate change, importance of taxa relative to abundance, and evaluating the impact of conservation program habitat enhancement efforts.

Oregon↗