Geology topics

Tamara A. Smith

Publications and source records attributed to Tamara A. Smith.

5 recordsLinked to original sources

USGS2025

Integrating data to assess occupancy patterns of an endangered bumble bee

There is growing interest in integrating community science data with structured monitoring data to estimate changes in distribution patterns of imperiled species, including pollinators. However, significant challenges remain in determining how unstructured community science data should be incorporated into formal analyses of species distributions. We developed a dynamic framework for combining community science and structured monitoring data of bumble bees to estimate changes in occupancy of rusty-patched bumble bees ( Bombus affinis ), a federally endangered species in the United States. We applied traditional metapopulation theory and accounted for imperfect detection to estimate site-specific extirpation risk and colonization rates across the known distribution of B. affinis in the Upper Midwest (USA). Despite a 144% increase in presence-only detections from 2017 to 2022, occupancy probabilities and the estimated number of occupied sites remained static or declined slightly across a 4-state region during this period. Our results provide preliminary evidence that the probability of local extirpation risk of B. affinis increased in response to drought, but that effect was tempered with a high number of neighboring patches occupied by B. affinis (i.e., rescue effect). Our framework can be used by managers to track population recovery goals for B. affinis and other bumble bees of conservation concern. In addition, our study highlights the importance of accounting for imperfect detection and addressing spatial sampling biases in bumble bee monitoring efforts, particularly those for which a portion of the monitoring data are generated from community science projects.

Illinois, Iowa, Minnesota, Wisconsin↗

USGS2024

Range-wide genetic analysis of an endangered bumble bee (Bombus affinis, Hymenoptera: Apidae) reveals population structure, isolation by distance, and low colony abundance

Declines in bumble bee species range and abundances are documented across multiple continents and have prompted the need for research to aid species recovery and conservation. The rusty patched bumble bee ( Bombus affinis ) is the first federally listed bumble bee species in North America. We conducted a range-wide population genetics study of B. affinis from across all extant conservation units to inform conservation efforts. To understand the species’ vulnerability and help establish recovery targets, we examined population structure, patterns of genetic diversity, and population differentiation. Additionally, we conducted a site-level analysis of colony abundance to inform prioritizing areas for conservation, translocation, and other recovery actions. We find substantial evidence of population structuring along an east-to-west gradient. Putative populations show evidence of isolation by distance, high inbreeding coefficients, and a range-wide male diploidy rate of ~15%. Our results suggest the Appalachians represent a genetically distinct cluster with high levels of private alleles and substantial differentiation from the rest of the extant range. Site-level analyses suggest low colony abundance estimates for B. affinis compared to similar datasets of stable, co-occurring species. These results lend genetic support to trends from observational studies, suggesting that B. affinis has undergone a recent decline and exhibit substantial spatial structure. The low colony abundances observed here suggest caution in overinterpreting the stability of populations even where B. affinis is reliably detected interannually. These results help delineate informed management units, provide context for the potential risks of translocation programs, and help set clear recovery targets for this and other threatened bumble bee species.

Iowa, Illinois, Indiana, Kentucky, Michigan, Minne↗

USGS2024

Floral Composition of Pollen Collected from a Rusty Patched Bumble Bee (Bombus affinis, Cresson) Nest in Southeastern Minnesota

Understanding the forage diets of imperiled bumble bees can improve conservation planning and habitat restoration efforts. In this study, we describe the taxonomic composition of bee-collected pollen from 2 Rusty Patched Bumble Bee ( Bombus affinis , Cresson) nests located in southeastern Minnesota. This is the first published reporting of pollen collected from active B. affinis nests. We also compared pollen identification via traditional palynological light microscopy with genetic identification via ITS metabarcoding. Among the 49 pollen samples analyzed, we detected 41 and 56 distinct taxa via light microscopy and metabarcoding, respectively. Furthermore, 27 of 47 total genera overlapped between the 2 methods. Bittersweet Nightshade ( Solanum dulcamara , Linnaeus) was the most detected species for both metabarcoding and microscopy identification for pollen prevalence. Pollen volume from the microscopy data showed that Lesser Burdock ( Arctium minus , Bernhardi), Alfalfa ( Medicago sativa , Linnaeus), Bittersweet Nightshade ( Solanum dulcamara , Linnaeus), Plumeless Thistle ( Carduus acanthoides , Linnaeus), and Red Clover ( Trifolium pratense , Linnaeus) together comprised more than half of the total volume of pollen. Light microscopy and metabarcoding revealed compositionally distinct plant communities when analyzed at the species level. Methodological concordance improved when analyzing pollen data at genus level, but both methods still reveal marginally distinct groupings. Our study highlights specific plant taxa that are important components of B. affinis pollen diets and provides actionable research for conservation efforts in urban systems. Our study also supports that B. affinis is a generalist forager and will collect pollen from a variety of native and non-native host plants.

Minnesota↗

USGS2022

Addressing detection uncertainty in Bombus affinis (Hymenoptera: Apidae) surveys can improve inferences made from monitoring

The U.S. Fish and Wildlife Service developed national guidelines to track species recovery of the endangered rusty patched bumble bee [ Bombus affinis Cresson (Hymenoptera: Apidae)] and to investigate changes in species occupancy across space and time. As with other native bee monitoring efforts, managers have specifically acknowledged the need to address species detection uncertainty and determine the sampling effort required to infer species absence within sites. We used single-season, single-species occupancy models fit to field data collected in four states to estimate imperfect detection of B. affinis and to determine the survey effort required to achieve high confidence of species detection. Our analysis revealed a precipitous, seasonal, decline in B. affinis detection probability throughout the July through September sampling window in 2021. We estimated that six, 30-min surveys conducted in early July are required to achieve a 95% cumulative detection probability, whereas >10 surveys would be required in early August to achieve the same level of confidence. Our analysis also showed B. affinis was less likely to be detected during hot and humid days and at patches of reduced habitat quality. Bombus affinis was frequently observed on Monarda fistulosa (Lamiales: Lamiaceae), followed by [ Pycnanthemum virginianum Rob. and Fernald (Lamiales: Lamiaceae)] , Eutrochium maculatum Lamont (Asterales: Asteraceae), and Veronicastrum virginicum Farw. (Lamiales: Plantaginaceae). Although our research is focused on B. affinis , it is relevant for monitoring other bumble bees of conservation concern, such as B. occidentalis Greene (Hymenoptera: Apidae) and B. terricola Kirby (Hymenoptera: Apidae) for which monitoring efforts have been recently initiated and occupancy is a variable of conservation interest.

Illinois, Iowa, Minnesota, Wisconsin↗

USGS2020

A century of pollen foraging by the endangered rusty patched bumble bee (Bombus affinis): Inferences from molecular sequencing of museum specimens

In 2017 the rusty patched bumble bee ( Bombus affinis ) became the first bee listed under the Endangered Species Act in the continental United States due to population declines and an 87% reduction in the species’ distribution. Bombus affinis decline began in the 1990s, predating modern bee surveying initiatives, and obfuscating drivers of decline. While understood to be a highly generalist forager, little is known about the role that resource limitation or shifting floral community composition could have played in B. affinis decline. Determining which floral species support B. affinis could assist conservation efforts where B. affinis persists and identify floral species for restoration efforts. We constructed a historical foraging profile of B. affinis via DNA sequencing of pollen from museum specimens spanning seven states collected from 1913 to 2013. Molecular analysis revealed no temporal changes in the floral richness or composition of B. affinis pollen samples across our sampling period. Likewise, we found no temporal changes in the presence or proportion of native vs. introduced species in pollen samples, though we observed much greater use of introduced floral species than previously determined for B. affinis . Floral community composition was regionally dissimilar, inconsistent with patterns of B. affinis decline by state. Our results suggest B. affinis decline was unlikely to have been driven by spatial or temporal limitations of specific floral species. This work greatly expands the known forage of B. affinis and will provide managers with insight to aid the conservation of B. affinis .

Biodiversity and Conservation↗