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T.R. Stanley

Publications and source records attributed to T.R. Stanley.

17 recordsLinked to original sources

Host and viral ecology determine bat rabies seasonality and maintenance

Rabies is an acute viral infection that is typically fatal. Most rabies modeling has focused on disease dynamics and control within terrestrial mammals (e.g., raccoons and foxes). As such, rabies in bats has been largely neglected until recently. Because bats have been implicated as natural reservoirs for several emerging zoonotic viruses, including SARS-like corona viruses, henipaviruses, and lyssaviruses, understanding how pathogens are maintained within a population becomes vital. Unfortunately, little is known about maintenance mechanisms for any pathogen in bat populations. We present a mathematical model parameterized with unique data from an extensive study of rabies in a Colorado population of big brown bats (Eptesicus fuscus) to elucidate general maintenance mechanisms. We propose that life history patterns of many species of temperate-zone bats, coupled with sufficiently long incubation periods, allows for rabies virus maintenance. Seasonal variability in bat mortality rates, specifically low mortality during hibernation, allows long-term bat population viability. Within viable bat populations, sufficiently long incubation periods allow enough infected individuals to enter hibernation and survive until the following year, and hence avoid an epizootic fadeout of rabies virus. We hypothesize that the slowing effects of hibernation on metabolic and viral activity maintains infected individuals and their pathogens until susceptibles from the annual birth pulse become infected and continue the cycle. This research provides a context to explore similar host ecology and viral dynamics that may explain seasonal patterns and maintenance of other bat-borne diseases.

Proceedings of the National Academy of Sciences of

Bat ecology and public health surveillance for rabies in an urbanizing region of Colorado

We describe use of Fort Collins, Colorado, and nearby areas by bats in 2001–2005, and link patterns in bat ecology with concurrent public health surveillance for rabies. Our analyses are based on evaluation of summary statistics, and information-theoretic support for results of simple logistic regression. Based on captures in mist nets, the city bat fauna differed from that of the adjacent mountains, and was dominated by big brown bats ( Eptesicus fuscus ). Species, age, and sex composition of bats submitted for rabies testing locally and along the urbanizing Front Range Corridor were similar to those of the mist-net captures and reflected the annual cycle of reproduction and activity of big brown bats. Few submissions occurred November- March, when these bats hibernated elsewhere. In summer females roosted in buildings in colonies and dominated health samples; fledging of young corresponded to a summer peak in health submissions with no increase in rabies prevalence. Roosting ecology of big brown bats in buildings was similar to that reported for natural sites, including colony size, roost-switching behavior, fidelity to roosts in a small area, and attributes important for roost selection. Attrition in roosts occurred from structural modifications of buildings to exclude colonies by citizens, but without major effects on long-term bat reproduction or survival. Bats foraged in areas set aside for nature conservation. A pattern of lower diversity in urban bat communities with dominance by big brown bats may occur widely in the USA, and is consistent with national public health records for rabies surveillance.

Colorado

Estimating the breeding population of long-billed curlew in the United States

Determining population size and long-term trends in population size for species of high concern is a priority of international, national, and regional conservation plans. Long-billed curlews (Numenius americanus) are a species of special concern in North America due to apparent declines in their population. Because long-billed curlews are not adequately monitored by existing programs, we undertook a 2-year study with the goals of 1) determining present long-billed curlew distribution and breeding population size in the United States and 2) providing recommendations for a long-term long-billed curlew monitoring protocol. We selected a stratified random sample of survey routes in 16 western states for sampling in 2004 and 2005, and we analyzed count data from these routes to estimate detection probabilities and abundance. In addition, we evaluated habitat along roadsides to determine how well roadsides represented habitat throughout the sampling units. We estimated there were 164,515 (SE = 42,047) breeding long-billed curlews in 2004, and 109,533 (SE = 31,060) breeding individuals in 2005. These estimates far exceed currently accepted estimates based on expert opinion. We found that habitat along roadsides was representative of long-billed curlew habitat in general. We make recommendations for improving sampling methodology, and we present power curves to provide guidance on minimum sample sizes required to detect trends in abundance.

Journal of Wildlife Management

Land use and small mammal predation effects on shortgrass prairie birds

Grassland birds endemic to the central shortgrass prairie ecoregion of the United States have experienced steep and widespread declines over the last 3 decades, and factors influencing reproductive success have been implicated. Nest predation is the major cause of nest failure in passerines, and nesting success for some shortgrass prairie birds is exceptionally low. The 3 primary land uses in the central shortgrass prairie ecoregion are native shortgrass prairie rangeland (62), irrigated and nonirrigated cropland (29), and Conservation Reserve Program (CRP, 8). Because shortgrasscropland edges and CRP may alter the community of small mammal predators of grassland bird nests, I sampled multiple sites on and near the Pawnee National Grasslands in northeast Colorado, USA, to evaluate 1) whether small mammal species richness and densities were greater in CRP fields and shortgrass prairiecropland edges compared to shortgrass prairie habitats, and 2) whether daily survival probabilities of ground-nesting grassland bird nests were negatively correlated with densities of small mammals. Small mammal species richness and densities, estimated using trapping webs, were generally greater along edges and on CRP sites compared to shortgrass sites. Vegetation did not differ among edges and shortgrass sites but did differ among CRP and shortgrass sites. Daily survival probabilities of artificial nests at edge and CRP sites and natural nests at edge sites did not differ from shortgrass sites, and for natural nests small mammal densities did not affect nest survival. However, estimated daily survival probability of artificial nests was inversely proportional to thirteen-lined ground squirrel (Spermophilus tridecemlineatus) densities. In conclusion, these data suggest that although land-use patterns on the shortgrass prairie area in my study have substantial effects on the small mammal community, insufficient data existed to determine whether land-use patterns or small mammal density were affecting grassland bird nest survival. These findings will be useful to managers for predicting the effects of land-use changes in the shortgrass prairie on small mammal communities and avian nest success. ?? 2010 The Wildlife Society.

Journal of Wildlife Management

Estimating length of avian incubation and nestling stages in afrotropical forest birds from interval-censored nest records

In the East Usambara Mountains in northeast Tanzania, research on the effects of forest fragmentation and disturbance on nest survival in understory birds resulted in the accumulation of 1,002 nest records between 2003 and 2008 for 8 poorly studied species. Because information on the length of the incubation and nestling stages in these species is nonexistent or sparse, our objectives in this study were (1) to estimate the length of the incubation and nestling stage and (2) to compute nest survival using these estimates in combination with calculated daily survival probability. Because our data were interval censored, we developed and applied two new statistical methods to estimate stage length. In the 8 species studied, the incubation stage lasted 9.6-21.8 days and the nestling stage 13.9-21.2 days. Combining these results with estimates of daily survival probability, we found that nest survival ranged from 6.0% to 12.5%. We conclude that our methodology for estimating stage lengths from interval-censored nest records is a reasonable and practical approach in the presence of interval-censored data. ?? 2010 The American Ornithologists' Union.

The Auk

Interaction of beaver and elk herbivory reduces standing crop of willow

Populations of beaver and willow have not thrived in riparian environments that are heavily browsed by livestock or ungulates, such as elk. The interaction of beaver and elk herbivory may be an important mechanism underlying beaver and willow declines in this competitive environment. We conducted a field experiment that compared the standing crop of willow three years after simulated beaver cutting on paired plants with and without intense elk browsing (∼85% utilization rate). Simulated beaver cutting with intense elk browsing produced willow that was small (biomass and diameter) and short, with far fewer, but longer, shoots and a higher percentage of dead biomass. In contrast, simulated beaver cutting without elk browsing produced willow that was large, tall, and leafy, with many more, but shorter, shoots (highly branched) and a lower percentage of dead biomass. Total stem biomass after three years was 10 times greater on unbrowsed plants than on browsed plants. Unbrowsed plants recovered 84% of their pre-cut biomass after only two growing seasons, whereas browsed plants recovered only 6%. Thus, the interaction of beaver cutting and elk browsing strongly suppressed the standing crop of willow. We predict that a lack of willow suitable as winter food for beaver can cause beaver populations to decline, creating a feedback mechanism that reduces beaver and willow populations. Thus, intense herbivory by ungulates or livestock can disrupt beaver–willow mutualisms that naturally occur in less competitive environments.

Ecological Applications

Small-mammal density estimation: A field comparison of grid-based vs. web-based density estimators

Statistical models for estimating absolute densities of field populations of animals have been widely used over the last century in both scientific studies and wildlife management programs. To date, two general classes of density estimation models have been developed: models that use data sets from capture–recapture or removal sampling techniques (often derived from trapping grids) from which separate estimates of population size ( NÌ‚ ) and effective sampling area ( AÌ‚ ) are used to calculate density ( DÌ‚ = NÌ‚ / AÌ‚ ); and models applicable to sampling regimes using distance-sampling theory (typically transect lines or trapping webs) to estimate detection functions and densities directly from the distance data. However, few studies have evaluated these respective models for accuracy, precision, and bias on known field populations, and no studies have been conducted that compare the two approaches under controlled field conditions. In this study, we evaluated both classes of density estimators on known densities of enclosed rodent populations. Test data sets ( n = 11) were developed using nine rodent species from capture–recapture live-trapping on both trapping grids and trapping webs in four replicate 4.2-ha enclosures on the Sevilleta National Wildlife Refuge in central New Mexico, USA. Additional “saturation” trapping efforts resulted in an enumeration of the rodent populations in each enclosure, allowing the computation of true densities. Density estimates ( DÌ‚ ) were calculated using program CAPTURE for the grid data sets and program DISTANCE for the web data sets, and these results were compared to the known true densities ( D ) to evaluate each model's relative mean square error, accuracy, precision, and bias. In addition, we evaluated a variety of approaches to each data set's analysis by having a group of independent expert analysts calculate their best density estimates without a priori knowledge of the true densities; this “blind” test allowed us to evaluate the influence of expertise and experience in calculating density estimates in comparison to simply using default values in programs CAPTURE and DISTANCE. While the rodent sample sizes were considerably smaller than the recommended minimum for good model results, we found that several models performed well empirically, including the web-based uniform and half-normal models in program DISTANCE, and the grid-based models M b and M bh in program CAPTURE (with AÌ‚ adjusted by species-specific full mean maximum distance moved (MMDM) values). These models produced accurate DÌ‚ values (with 95% confidence intervals that included the true D values) and exhibited acceptable bias but poor precision. However, in linear regression analyses comparing each model's DÌ‚ values to the true D values over the range of observed test densities, only the web-based uniform model exhibited a regression slope near 1.0; all other models showed substantial slope deviations, indicating biased estimates at higher or lower density values. In addition, the grid-based DÌ‚ analyses using full MMDM values for WÌ‚ area adjustments required a number of theoretical assumptions of uncertain validity, and we therefore viewed their empirical successes with caution. Finally, density estimates from the independent analysts were highly variable, but estimates from web-based approaches had smaller mean square errors and better achieved confidence-interval coverage of D than did grid-based approaches. Our results support the contention that web-based approaches for density estimation of small-mammal populations are both theoretically and empirically superior to grid-based approaches, even when sample size is far less than often recommended. In view of the increasing need for standardized environmental measures for comparisons among ecosystems and through time, analytical models based on distance sampling appear to offer accurate density estimation approaches for research studies involving small-mammal abundances.

Ecological Monographs

How many kilojoules does a Black-billed Magpie nest cost?

Energetic costs of nest construction are difficult to estimate for birds, and currently estimates are available for only a handful of species. In this paper, I estimate the minimum cost of nest construction by a pair of Black-billed Magpies ( Pica hudsonia ). Data on the number of sticks and mud pellets comprising a nest were used to determine the minimum number of trips required to construct the nest, and were combined with information on distances to the nearest sources of nesting materials, data on flight speeds, and bird morphometric measures to estimate costs of transporting nesting materials. For the Black-billed Magpie pair I observed, nest construction required a minimum of 2564 trips for nesting materials, 276.2 km of commuting, 8.4 h of flight, and cost 209.1 kJ. Spreading this cost over the 40 d required to build the nest yields an estimate of 2.61 kJ/adult/day. I compared this value to published estimates of daily metabolizable energy intake for Black-billed Magpies, and calculated that breeding adults would need to increase their daily intake between 0.7% and 1.0% to cover the energetic costs of nest construction. In contrast, egg laying is estimated to require a full 23% of the daily energy expenditure of female magpies. These values suggest the energetic cost of nest building in Black-billed Magpies is relatively insignificant.

Journal of Field Ornithology

Modeling and estimation of stage-specific daily survival probabilities of nests

In studies of avian nesting success, it is often of interest to estimate stage-specific daily survival probabilities of nests. When data can be partitioned by nesting stage (e.g., incubation stage, nestling stage), piecewise application of the Mayfield method or Johnson's method is appropriate. However, when the data contain nests where the transition from one stage to the next occurred during the interval between visits, piecewise approaches are inappropriate. In this paper, I present a model that allows joint estimation of stage-specific daily survival probabilities even when the time of transition between stages is unknown. The model allows interval lengths between visits to nests to vary, and the exact time of failure of nests does not need to be known. The performance of the model at various sample sizes and interval lengths between visits was investigated using Monte Carlo simulations, and it was found that the model performed quite well: bias was small and confidence-interval coverage was at the nominal 95% rate. A SAS program for obtaining maximum likelihood estimates of parameters, and their standard errors, is provided in the Appendix.

Ecology

Nest predation on black-tailed prairie dog colonies

Nest predation is the principal cause of mortality for many grassland birds. Predation rates may be higher on prairie dog colonies because they may have less available nesting cover and may increase predator abundance. We compared 14-day nest predation rates for 1,764 artificial nests on 102 black-tailed prairie dog ( Cynomys ludovicianus ) colonies and their paired off-colony sites (similar habitat lacking prairie dogs) from 14 May to 26 June 1998 in South Dakota and Wyoming. Predation rates on colonies (66.2 ± 2.2%; x̄ ± SE) were 29.5% higher than at off-colony sites (51.1 ± 2.7%). Nesting cover on colonies was less dense and more uniform in structure and regression analysis showed differences in nest predation rates were correlated with estimates of mean nesting cover. Avian species associated with prairie dog colonies had smaller clutches and more broods/year than species associated with off-colony sites, suggesting a mechanism that may help compensate for increased risk of nest failure. Factors that influence predator-prey dynamics (e.g., habitat fragmentation) or foraging success (e.g., insect availability) also may help explain higher risk of nest predation on prairie dog colonies. Our conclusions support others in recommending protection of large, intact prairie dog ecosystems.

Colorado, South Dakota, Utah, Wyoming

A closure test for time-specific capture-recapture data

The assumption of demographic closure in the analysis of capture-recapture data under closed-population models is of fundamental importance. Yet, little progress has been made in the development of omnibus tests of the closure assumption. We present a closure test for time-specific data that, in principle, tests the null hypothesis of closed-population model M(t) against the open-population Jolly-Seber model as a specific alternative. This test is chi-square, and can be decomposed into informative components that can be interpreted to determine the nature of closure violations. The test is most sensitive to permanent emigration and least sensitive to temporary emigration, and is of intermediate sensitivity to permanent or temporary immigration. This test is a versatile tool for testing the assumption of demographic closure in the analysis of capture-recapture data.

Environmental and Ecological Statistics

Do mammalian nest predators follow human scent trails in the shortgrass prairie?

Nest predation, the major cause of nest failure in passerines, has exerted a strong influence on the evolution of life history traits of birds. Because human disturbance during nest monitoring may alter predation rates, we investigated whether human scent affected the survival of artificial ground nests in shortgrass prairie. Our experiment consisted of two treatments, one in which there was no attempt to mask human scent along travel routes between artificial nests, and one in which we masked human scent with cow manure, a scent familiar to mammalian predators in the study area. We found no evidence that human scent influenced predation rates, nor that mammalian predators followed human trails between nests. We conclude that scent trails made by investigators do not result in lower nesting success of passerines of the shortgrass prairie where vegetation trampling is minimal, mammalian predators predominate, and avian predators are rare.

The Wilson Bulletin

Effects of boron and selenium on mallard reproduction and duckling growth and survival

Boron (B) and selenium (Se) sometimes occur together in high concentrations in the environment and can accumulate in plants and invertebrates consumed by waterfowl. One hundred twenty-six pairs of breeding mallards (Anas platyrhynchos) were fed diets supplemented with B (as boric acid) at 0, 450, or 900 ppm, in combination with Se (as seleno-DL-methionine) at 0, 3.5, or 7 ppm, in a replicated factorial experiment. Ducklings produced received the same treatment combination as their parents. Boron and Se accumulated in adult liver, egg, and duckling liver. In adults, B and Se caused weight loss, and B decreased hemoglobin concentration, egg weight, and egg fertility. Both B and Se reduced hatching success and duckling weight, and B reduced duckling growth and duckling production, and caused several alterations in duckling liver biochemistry. Duckling survival was not reduced by B or Se, and neither B nor Se had histopathologic effects on adult or duckling liver, kidney, or spleen. There was little evidence of interaction between B and Se. This study demonstrated that B and Se, in the chemical forms and at the dietary levels administered in this study, can adversely affect mallard reproduction and duckling growth.

Environmental Toxicology and Chemistry

Main and interactive effects of arsenic and selenium on mallard reproduction and duckling growth and survival

Arsenic (As) and selenium (Se) occur together in high concentrations in the environment and can accumulate in aquatic plants and invertebrates consumed by waterfowl. Ninety-nine pairs of breeding mallards ( Anas platyrhynchos ) were fed diets supplemented with As (sodium arsenate) at 0, 25, 100, or 400 μg/g, in combination with Se (seleno-DL-methionine) at 0 or 10 μg/g, in a replicated factorial experiment. Ducklings produced were placed on the same treatment combination as their parents. Arsenic accumulated in adult liver and egg, reduced adult weight gain and liver weight, delayed the onset of egg laying, decreased whole egg weight, and caused eggshell thinning. Arsenic did not affect hatching success and was not teratogenic. In ducklings, As accumulated in the liver and reduced body weight, growth, and liver weight. Arsenic did not increase duckling mortality, but it did decrease overall duckling production. Selenium accumulated in adult liver and egg, was teratogenic, and decreased hatching success. Selenium did not affect adult weight, liver weight, survival, onset of egg laying, egg fertility, egg weight, or eggshell thickness. In ducklings, Se accumulated in the liver and reduced body weight and growth, and increased liver weight. Selenium increased duckling mortality and decreased overall duckling production. Antagonistic interactions between As and Se occurred whereby As reduced Se accumulation in liver and egg, and alleviated the effects of Se on hatching success and embryo deformities. It was demonstrated that As and Se, in the chemical forms and at the dietary levels administered in this study, can adversely affect mallard reproduction and duckling growth and survival, and that As can alleviate toxic effects of Se.

Archives of Environmental Contamination and Toxico