Geology topics

Susan M. Haig

Publications and source records attributed to Susan M. Haig.

At least 55 records · Page 3Linked to original sources

USGS2012

Variation in migratory behavior influences regional genetic diversity and structure among American kestrel populations (Falco sparverius) in North America

Birds employ numerous strategies to cope with seasonal fluctuations in high-quality habitat availability. Long distance migration is a common tactic; however, partial migration is especially common among broadly distributed species. Under partial migration systems, a portion of a species migrates, whereas the remainder inhabits breeding grounds year round. In this study, we identified effects of migratory behavior variation on genetic structure and diversity of American Kestrels (Falco sparverius), a widespread partial migrant in North America. American Kestrels generally migrate; however, a resident group inhabits the southeastern United States year round. The southeastern group is designated as a separate subspecies (F. s. paulus) from the migratory group (F. s. sparverius). Using mitochondrial DNA and microsatellites from 183 and 211 individuals, respectively, we illustrate that genetic structure is stronger among nonmigratory populations, with differentiation measures ranging from 0.060 to 0.189 depending on genetic marker and analysis approach. In contrast, measures from western North American populations ranged from 0 to 0.032. These findings suggest that seasonal migratory behavior is also associated with natal and breeding dispersal tendencies. We likewise detected significantly lower genetic diversity within nonmigratory populations, reflecting the greater influence of genetic drift in small populations. We identified the signal of population expansion among nonmigratory populations, consistent with the recent establishment of higher latitude breeding locations following Pleistocene glacial retreat. Differentiation of F. s. paulus and F. s. sparverius reflected subtle differences in allele frequencies. Because migratory behavior can evolve quickly, our analyses suggest recent origins of migratory American Kestrel populations in North America.

Journal of Heredity↗

USGS2012

Temporal analysis of mtDNA variation reveals decreased genetic diversity in least terns

The Least Tern (Sternula antillarum) has undergone large population declines over the last century as a result of direct and indirect anthropogenic factors. The genetic implications of these declines are unknown. We used historical museum specimens (pre-1960) and contemporary (2001–2005) samples to examine range-wide phylogeographic patterns and investigate potential loss in the species' genetic variation. We obtained sequences (522 bp) of the mitochondrial gene for NADH dehydrogenase subunit 6 (ND6) from 268 individuals from across the species' range. Phylogeographic analysis revealed no association with geography or traditional subspecies designations. However, we detected potential reductions in genetic diversity in contemporary samples from California and the Atlantic coast Least Tern from that in historical samples, suggesting that current genetic diversity in Least Tern populations is lower than in their pre-1960 counterparts. Our results offer unique insights into changes in the Least Tern's genetic diversity over the past century and highlight the importance and utility of museum specimens in studies of conservation genetics.

The Condor↗

USGS2012

Evidence for population bottlenecks and subtle genetic structure in the yellow rail

The Yellow Rail (Coturnicops noveboracencis) is among the most enigmatic and least studied North American birds. Nesting exclusively in marshes and wetlands, it breeds largely east of the Rocky Mountains in the northern United States and Canada, but there is an isolated population in southern Oregon once believed extirpated. The degree of connectivity of the Oregon population with the main population is unknown. We used mitochondrial DNA sequences (mtDNA) and six microsatellite loci to characterize the Yellow Rail's genetic structure and diversity patterns in six areas. Our mtDNA-based analyses of genetic structure identified significant population differentiation, but pairwise comparison of regions identified no clear geographic trends. In contrast, microsatellites suggested subtle genetic structure differentiating the Oregon population from those in the five regions sampled in the Yellow Rail's main breeding range. The genetic diversity of the Oregon population was also the lowest of the six regions sampled, and Oregon was one of three regions that demonstrated evidence of recent population bottlenecks. Factors that produced population reductions may include loss of wetlands to development and agricultural conversion, drought, and wildfire. At this time, we are unable to determine if the high percentage (50%) of populations having experienced bottlenecks is representative of the Yellow Rail's entire range. Further genetic data from additional breeding populations will be required for this issue to be addressed.

The Condor↗

USGS2011

Will an "island" population of voles be recolonized if eradicated? Insights from molecular genetic analyses

We performed genetic analyses of Microtus longicaudus populations within the Crook Point Unit of the Oregon Islands National Wildlife Refuge. A M. longicaudus population at Saddle Rock (located approx. 65 m off‐shore from the Crook Point mainland) is suspected to be partially responsible for declines of a Leach's storm‐petrel colony at this important nesting site. Using Amplified Fragment Length Polymorphism markers and mitochondrial DNA, we illustrate that Saddle Rock and Crook Point function as separate island and mainland populations despite their close proximity. In addition to genetic structure, we also observed reduced genetic diversity at Saddle Rock, suggesting that little individual movement occurs between populations. If local resource managers decide to perform an eradication at Saddle Rock, we conclude that immediate recolonization of the island by M. longicaudus would be unlikely. Because M. longicaudus is native to Oregon, we also consider the degree with which the differentiation of Saddle Rock signifies the presence of a unique entity that warrants conservation rather than eradication

Oregon↗

USGS2011

Seasonal movement, residency, and migratory patterns of Wilson's Snipe (Gallinago delicata)

Cross-seasonal studies of avian movement establish links between geographically distinct wintering, breeding, and migratory stopover locations, or assess site fidelity and movement between distinct phases of the annual cycle. Far fewer studies have investigated individual movement patterns within and among seasons over an annual cycle. Within western Oregon's Willamette Valley throughout 2007, we quantified intra- and interseasonal movement patterns, fidelity (regional and local), and migratory patterns of 37 radiomarked Wilson's Snipe ( Gallinago delicata ) to elucidate residency in a region of breeding- and wintering-range overlap. Telemetry revealed complex regional population structure, including winter residents (74%), winter transients (14%), summer residents (9%), and one year-round resident breeder (3%). Results indicated a lack of connectivity between winter and summer capture populations, some evidence of partial migration, and between-season fidelity to the region (winter-resident return; subsequent fall). Across seasons, the extent of movements and use of multiple wetland sites suggested that Wilson's Snipe were capable of exploratory movements but more regularly perceived local and fine-scale segments of the landscape as connected. Movements differed significantly by season and residency; individuals exhibited contracted movements during late winter and more expansive movements during precipitation-limited periods (late spring, summer, fall). Mean home-range size was 3.5 ± 0.93 km 2 (100% minimum convex polygon [MCP]) and 1.6 ± 0.42 km 2 (95% fixed kernel) and did not vary by sex; however, home range varied markedly by season (range of 100% MCPs: 1.04–7.56 km 2 ). The results highlight the need to consider seasonal and interspecific differences in shorebird life histories and space-use requirements when developing regional wetland conservation plans.

Oregon↗

USGS2011

Genetic applications in avian conservation

A fundamental need in conserving species and their habitats is defining distinct entities that range from individuals to species to ecosystems and beyond (Table 1; Ryder 1986, Moritz 1994, Mayden and Wood 1995, Haig and Avise 1996, Hazevoet 1996, Palumbi and Cipriano 1998, Hebert et al. 2004, Mace 2004, Wheeler et al. 2004, Armstrong and Ball 2005, Baker 2008, Ellis et al. 2010, Winker and Haig 2010). Rapid progression in this interdisciplinary field continues at an exponential rate; thus, periodic updates on theory, techniques, and applications are important for informing practitioners and consumers of genetic information. Here, we outline conservation topics for which genetic information can be helpful, provide examples of where genetic techniques have been used best in avian conservation, and point to current technical bottlenecks that prevent better use of genomics to resolve conservation issues related to birds. We hope this review will provide geneticists and avian ecologists with a mutually beneficial dialogue on how this integrated field can solve current and future problems.

The Auk↗

USGS2010

Status of the California condor (Gymnogyps californianus) and efforts to achieve its recovery

The California Condor ( Gymnogyps californianus ; hereafter "condor"; Fig. 1) has long been symbolic of avian conservation in the United States. Its large size, inquisitiveness, and association with remote places make it highly charismatic, and its decline to the brink of extinction aroused a continuing public interest in its plight. By 1982, only 22 individuals remained of this species whose range once encompassed much of North America. The last wild bird was trapped and brought into captivity in 1987, which rendered the species extinct in the wild (Snyder and Snyder 1989). In the 1980s, some questioned whether viable populations could ever again exist in the natural environment, and whether limited conservation funds should be expended on what they viewed as a hopeless cause (Pitelka 1981). Nevertheless, since that low point, a captive-breeding and release program has increased the total population by an order of magnitude, and condors fly free again in California, Arizona, Utah, and Baja California, Mexico (Fig. 2). At this writing (summer 2009), more than 350 condors exist, 180 of which are in the wild (J. Grantham pers. comm.). The free-living birds face severe challenges, however, and receive constant human assistance. The intensive management applied to the free-living populations, as well as the ongoing monitoring and captive-breeding programs, are tremendously expensive and become more so as the population grows. Thus, the program has reached a crossroads, caught between the financial and logistical pressures required to maintain an increasing number of condors in the wild and the environmental problems that preclude establishment of naturally sustainable, free-ranging populations.

The Auk↗

USGS2010

Long-Billed Curlew Breeding Success on Mid-Columbia River National Wildlife Refuges, South-Central Washington and North-Central Oregon, 2007-08

Long-billed curlew (Numenius americanus) reproductive success was evaluated on the Mid-Columbia River National Wildlife Refuges of south-central Washington and north-central Oregon during the 2007 and 2008 breeding seasons. Additionally, we assisted the U.S. Fish and Wildlife Service in collecting information on distribution, abundance, and brood habitat for this shorebird species of conservation concern. A total of 32 breeding pairs were located on the refuges in 2007 and 35 pairs were located in 2008. We monitored 17 nests in 2007 and 23 nests in 2008. Curlew pairs were most abundant on Hanford Reach National Monument in 2007 but more nests were located on Umatilla National Wildlife Refuge in both years, with Columbia National Wildlife Refuge supporting few pairs. Nest success was 23.6 percent in 2007 and 32.9 percent in 2008 after taking into account exposure time and combining data for all the refuges. We were unable to detect any relationship between nest success and habitat type or habitat variables measured. However, our study was the first to document use of agricultural fields on the refuge as curlew nest habitat. We collected 39 and 28 brood locations in 2007 and 2008, respectively, and many observations were likely resightings of the same brood. Broods used a similar variety of habitats as nesting curlew and no clear habitat use pattern was detected.

Open-File Report↗

USGS2010

Analysis of California Condor (Gymnogyps californianus) use of six management units using location data from global positioning system transmitters, southern California, 2004-09-Initial report

This report provides an analysis of California Condor (Gymnogyps californianus) space use of six management units in southern California (Hopper Mountain and Bitter Creek National Wildlife Refuges, Wildlands Conservancy-Wind Wolves Preserve, Tejon Mountain Village Specific Plan, California Condor Study Area, and the Tejon Ranch excluding Tejon Mountain Village Specific Plan and California Condor Study Area). Space use was analyzed to address urgent management needs using location data from Global Positioning System transmitters. The U.S. Fish and Wildlife Service provided the U.S. Geological Survey with location data (2004-09) for California Condors from Global Positioning System transmitters and Geographic Information System data for the six management units in southern California. We calculated relative concentration of use estimates for each management unit for each California Condor (n = 21) on an annual basis (n = 39 annual home ranges) and evaluated resource selection for the population each year using the individual as our sampling unit. The most striking result from our analysis was the recolonization of the Tejon Mountain Village Specific Plan, California Condor Study Area, and Tejon Ranch management units during 2008. During 2004-07, the home range estimate for two (25 percent) California Condors overlapped the Tejon Mountain Village Specific Plan, California Condor Study Area, and Tejon Ranch management units (n = 8), and use within the annual home range generally was bimodal and was concentrated on the Bitter Creek and Hopper Mountain National Wildlife Refuges. However, 10 (77 percent) California Condor home ranges overlapped the Tejon Mountain Village Specific Plan, California Condor Study Area, and Tejon Ranch management units during 2008 (n = 13), and by 2009, the home range of every condor carrying a Global Positioning System transmitter (n = 14) overlapped these management units. Space use was multimodal within the home range during 2008-09 and was concentrated on Hopper Mountain Refuge in the south, Bittercreek Refuge and the Wind Wolves Preserve in the northwest, and the Tejon Mountain Village Specific Plan, California Condor Study Area, and Tejon Ranch management units in the northeast. Recolonization of the Tejon Mountain Village Specific Plan, California Condor Study Area, and Tejon Ranch management units reestablished traditional condor movement and foraging patterns in southern California and provides the travel corridor (approximately 20 kilometers wide) for recolonization of the northeastern part of the species historical range.

Open-File Report↗

USGS2010

Seasonal movements, winter range use, and migratory connectivity of the Black Oystercatcher

The Black Oystercatcher ( Haematopus bachmani ) is an intertidal obligate along North America's Pacific coast and a species of high conservation concern (population size 8900–11 000 individuals). Understanding birds' movements and space use throughout the annual cycle has become paramount in the face of changing environmental conditions, and intertidal species may be particularly vulnerable to habitat change due to anticipated sea-level rise associated with climate change and increasing coastal development. Conservation of the Black Oystercatcher is hindered by a lack of information on the species' nonbreeding distribution, seasonal movements, and habitat connectivity. Using satellite ( n = 19) and VHF ( n = 19) radio transmitters, we tracked Black Oystercatchers from five breeding sites (Vancouver Island, British Columbia; Kodiak Island, Prince William Sound, Middleton Island, and Juneau, Alaska) through one and one half annual cycles (May 2007–Dec 2008). We documented medium- to long-distance migration (range of migration distance 130–1667 km) in three populations (Prince William Sound, Middleton Island, and Juneau) and year-round residency in two others (Kodiak and Vancouver Island). We observed variation in the timing and length of migration by study site, and individual birds demonstrated fidelity to breeding and nonbreeding sites. We did not observe strong migratory connectivity. Migratory oystercatchers distributed themselves widely along the coasts of British Columbia and southeast Alaska during winter. Results provide baseline information on the Black Oystercatcher's movements and space use throughout the annual cycle.

Alaska↗

USGS2010

7.2.3 Land Birds

Explore the source record for details and available documents.

Oregon↗

USGS2009

Data from the 2006 International Piping Plover Census

This report presents the results of the 2006 International Census of Piping Plovers (Charadrius melodus). Two sets of tabular data are reported: one for distribution and abundance of wintering Piping Plovers, the other for distribution and abundance of breeding Piping Plovers. The winter census resulted in the observation of 3,884 Piping Plovers at 546 sites. The breeding census resulted in the observation of 8,092 adult piping plovers at 1,925 sites. An appendix provides census reports for each location surveyed. This report was prepared to meet an immediate need of the U.S. Fish and Wildlife Service for census data for Piping Plovers.

Data Series↗

USGS2009

Molecular Population Genetic Structure in the Piping Plover

The Piping Plover (Charadrius melodus) is a migratory shorebird currently listed as Endangered in Canada and the U.S. Great Lakes, and threatened throughout the remainder of its U.S. breeding and winter range. In this study, we undertook the first comprehensive molecular genetic-based investigation of Piping Plovers. Our primary goals were to (1) address higher level subspecific taxonomic issues, (2) characterize population genetic structure, and (3) make inferences regarding past bottlenecks or population expansions that have occurred within this species. Our analyses included samples of individuals from 23 U.S. States and Canadian Provinces, and were based on mitochondrial DNA sequences (580 bp, n = 245 individuals) and eight nuclear microsatellite loci (n = 229 individuals). Our findings illustrate strong support for separate Atlantic and Interior Piping Plover subspecies (C. m. melodus and C. m. circumcinctus, respectively). Birds from the Great Lakes region were allied with the Interior subspecies group and should be taxonomically referred to as C. m. circumcinctus. Population genetic analyses suggested that genetic structure was stronger among Atlantic birds relative to the Interior group. This pattern indicates that natal and breeding site fidelity may be reduced among Interior birds. Furthermore, analyses suggested that Interior birds have previously experienced genetic bottlenecks, whereas no evidence for such patterns existed among the Atlantic subspecies. Likewise, genetic analyses indicated that the Great Lakes region has experienced a population expansion. This finding may be interpreted as population growth following a previous bottleneck event. No genetic evidence for population expansions was found for Atlantic, Prairie Canada, or U.S. Northern Great Plains individuals. We interpret our population history insights in light of 25 years of Piping Plover census data. Overall, differences observed between Interior and Atlantic birds may reflect differences in spatiotemporal stability of Piping Plover nesting habitat between regions.

Open-File Report↗

USGS2008

Identification of kin structure among Guam rail founders: A comparison of pedigrees and DNA profiles

Kin structure among founders can have a significant effect on subsequent population structure. Here we use the correlation between DNA profile similarity and relatedness calculated from pedigrees to test hypotheses regarding kin structure among founders to the captive Guam rail ( Rallus owstoni ) population. Five different pedigrees were generated under the following hypotheses: (i) founders are unrelated; (ii) founders are unrelated except for same-nest chicks; (iii) founders from the same major site are siblings; (iv) founders from the same local site are siblings; and (v) founders are related as defined by a UPGMA cluster analysis of DNA similarity data. Relatedness values from pedigrees 1, 2 and 5 had the highest correlation with DNA similarity but the correlation between relatedness and similarity were not significantly different among pedigrees. Pedigree 5 resulted in the highest correlation overall when using only relatedness values that changed as a result of different founder hypotheses. Thus, founders were assigned relatedness based on pedigree 5 because it had the highest correlations with DNA similarity, was the most conservative approach, and incorporated all field data. The analyses indicated that estimating relatedness using DNA profiles remains problematic, therefore we compared mean kinship , a measure of genetic importance, with mean DNA profile similarity to determine if genetic importance among individuals could be determined via use of DNA profiles alone. The significant correlation suggests this method may provide more information about population structure than was previously thought. Thus, DNA profiles can provide a reasonable explanation for founder relatedness and mean DNA profile similarity may be helpful in determining relative genetic importance of individuals when detailed pedigrees are absent.

Guam↗

USGS2008

Avian movements and wetland connectivity in landscape conservation

The current conservation crisis calls for research and management to be carried out on a long-term, multi-species basis at large spatial scales. Unfortunately, scientists, managers, and agencies often are stymied in their effort to conduct these large-scale studies because of a lack of appropriate technology, methodology, and funding. This issue is of particular concern in wetland conservation, for which the standard landscape approach may include consideration of a large tract of land but fail to incorporate the suite of wetland sites frequently used by highly mobile organisms such as waterbirds (e.g., shorebirds, wading birds, waterfowl). Typically, these species have population dynamics that require use of multiple wetlands, but this aspect of their life history has often been ignored in planning for their conservation. We outline theoretical, empirical, modeling, and planning problems associated with this issue and suggest solutions to some current obstacles. These solutions represent a tradeoff between typical in-depth single-species studies and more generic multi-species studies. They include studying within- and among-season movements of waterbirds on a spatial scale appropriate to both widely dispersing and more stationary species; multi-species censuses at multiple sites; further development and use of technology such as satellite transmitters and population-specific molecular markers; development of spatially explicit population models that consider within-season movements of waterbirds; and recognition from funding agencies that landscape-level issues cannot adequately be addressed without support for these types of studies.

Conservation Biology↗

USGS2008

Population structure of red-cockaded woodpeckers (Picoides borealis) in south Florida: RAPDs revisited

Six south Florida populations of the endangered red-cockaded woodpecker ( Picoides borealis ) were sampled to examine genetic diversity and population structure in the southernmost portion of the species' range relative to 14 previously sampled populations from throughout the species range. Random amplified polymorphic DNA (RAPD) analyses were used to evaluate the populations ( n = 161 individuals, 13 primers, one band/primer). Results suggested that south Florida populations have significant among-population genetic differentiation ( F ST = 0.17, P < 0.000), although gene flow may be adequate to offset drift ( N m = 1.26). Comparison of Florida populations with others sampled indicated differentiation was less in Florida ( F ST for all populations = 0.21). Cluster analyses of all 20 populations did not reflect complete geographical predictions, although clustering of distant populations resulted in a significant correlation between genetic distance and geographical distance. Overall, results suggest populations in south Florida, similar to the remainder of the species, have low genetic diversity and high population fragmentation. Exact clustering of distant populations supports the ability of RAPDs to differentiate populations accurately. Our results further support past management recommendations that translocations of birds among geographically proximate populations is preferable to movement of birds between distant populations.

Florida↗

USGS2008

Genetics Show Current Decline and Pleistocene Expansion in Northern Spotted Owls

The northern spotted owl (Strix occidentalis caurina) is one of the most controversial threatened subspecies ever listed under the U.S. Endangered Species Act. Because of concern for persistence of the subspecies, logging on Federal lands in the U.S. Pacific Northwest was dramatically reduced under the Northwest Forest Plan in 1994. Despite protection of its remaining forest habitat, recent field studies show continued demographic declines of northern spotted owls. One potential threat to northern spotted owls that has not yet been shown is loss of genetic variation from population bottlenecks that can increase inbreeding depression and decrease adaptive potential. Here, we show recent genetic bottlenecks in northern spotted owls using a large genetic dataset (352 individuals from across the subspecies' range and 11 microsatellite loci). The signature of bottlenecks was strongest in Washington State, in agreement with field data. Interestingly, we also found a genetic signature of Pleistocene expansion in the same study areas where recent bottlenecks were shown. Our results provide independent evidence that northern spotted owls have recently declined, and suggest that loss of genetic variation is an emerging threat to the subspecies' persistence. Reduced effective population size (Ne), shown here in addition to field evidence for demographic decline, highlights the increasing vulnerability of this bird to extinction.

Open-File Report↗

USGS2008

Landscape Features Shape Genetic Structure in Threatened Northern Spotted Owls

Several recent studies have shown that landscape features can strongly affect spatial patterns of gene flow and genetic variation. Understanding landscape effects on genetic variation is important in conservation for defining management units and understanding movement patterns. The landscape may have little effect on gene flow, however, in highly mobile species such as birds. We tested for genetic breaks associated with landscape features in the northern spotted owl (Strix occidentalis caurina), a threatened subspecies associated with old forests in the U.S. Pacific Northwest and extreme southwestern Canada. We found little evidence for distinct genetic breaks in northern spotted owls using a large microsatellite dataset (352 individuals from across the subspecies' range genotyped at 10 loci). Nonetheless, dry low-elevation valleys and the Cascade and Olympic Mountains restrict gene flow, while the Oregon Coast Range facilitates it. The wide Columbia River is not a barrier to gene flow. In addition, inter-individual genetic distance and latitude were negatively related, likely reflecting northward colonization following Pleistocene glacial recession. Our study shows that landscape features may play an important role in shaping patterns of genetic variation in highly vagile taxa such as birds.

Open-File Report↗