Geology topics

Summer M. Burdick

Publications and source records attributed to Summer M. Burdick.

At least 19 recordsLinked to original sources

USGS2026

Differences among runs of Chinook Salmon in routing probability at the Georgiana Slough-Sacramento River junction

The survival of juvenile Chinook Salmon ( Oncorhynchus tshawytscha ) depends on the specific migration route they take through the Sacramento–San Joaquin Delta. Factors such as flow magnitude, flow direction, and distribution of fish across the channel significantly affect the likelihood of their entering routes with lower survival probabilities. Management strategies to mitigate the entry of endangered winter-run and threatened spring-run Chinook Salmon into the interior Delta—particularly through Georgiana Slough—involve flow regulation and the installation of a bioacoustic fish fence. Monitoring the effectiveness of these measures has primarily relied on acoustically-tagged, juvenile, hatchery-reared, late-fall-run Chinook Salmon, which are easier to obtain and can accommodate larger tags compared to other runs. Previous studies explored how flow dynamics affect routing probabilities of late-fall-run Chinook Salmon, but there is a lack of understanding about how routing probabilities vary among runs. We leveraged data from 15 previous studies comprising 3,004 acoustically-tagged fish across all four runs, over a 12-year period, to assess the effects of run on routing probability into Georgiana Slough, while accounting for variation in flow dynamics. We employed logistic regression to model the influence of tidal flow metrics, time of day (day and night), and run type on the probability of juvenile Chinook Salmon being routed into Georgiana Slough. Our analysis revealed that reverse flow during incoming tides influenced the routing probabilities of all runs. An increased proportion of flow into Georgiana Slough, meant an increased probability for all runs to be routed into Georgiana Slough. Late-fall-run Chinook Salmon also showed a greater probability of routing into Georgiana Slough during the night than during the day, whereas the opposite was true for other runs. These differences in routing probability affect our understanding of how management actions intended to reduce routing into Georgiana Slough may differentially affect the four runs of Chinook Salmon in the Sacramento River.

Callifornia↗

USGS2026

Non-physical barrier design and environmental conditions alter routing and survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta

Pacific salmon face substantial challenges when migrating through anthropogenically modified river systems, such as the Sacramento-San Joaquin River Delta (the Delta). Non-physical behavioral barriers, such as the bioacoustic fish fence (BAFF), are one potential solution for guiding fish away from hazards without obstructing water flow. However, the effectiveness of these technologies depends on abiotic and biotic conditions. In the Delta, a BAFF was deployed at Georgiana Slough in 2011, 2012, and 2024 to deter juvenile Chinook salmon ( Oncorhynchus tshawytscha ) from migrating into the interior Delta, a region associated with lower survival than the mainstem Sacramento River. We leveraged nine years of acoustic telemetry data to evaluate BAFF performance across flow conditions and two BAFF designs (2011/2012 vs. 2024), and to assess the BAFF's contribution to improving through-Delta survival. The BAFF reduced routing into Georgiana Slough from 26.5% without a barrier to 8.9% in 2011/2012 and 15.9% in 2024. In general, routing into Georgiana Slough increased with the proportion of flow entering the channel during periods without a BAFF and during the 2024 deployment but remained constant during the 2011/2012 deployment. Additionally, BAFF effectiveness declined with increasing input flow. Ultimately, reduced routing into Georgiana Slough during the 2024 BAFF deployment resulted in an increase in estimated through-Delta survival between 0.2 and 1.6 percentage points depending on release group. Our results provide valuable insights into the role of non-physical barriers in complex river systems and inform future management strategies for protecting migrating juvenile Chinook salmon in the Sacramento-San Joaquin River Delta.

California↗

USGS2026

Assessing hatchery infrastructure for invasive Dreissenid mussel vulnerability in eastern Washington

Zebra ( Dreissena polymorpha ) and quagga ( Dreissena rostriformis bugensis ) mussels have caused the highest economic costs among all aquatic invasive species in the United States (Washington Department of Fish and Wildlife (WDFW) 2016). Officials estimate that if zebra and quagga mussels become established in Washington, removal and management costs could exceed $100 million annually (WDFW 2024a). The Pacific Northwest’s first confirmed detection of quagga mussels occurred in September 2023, when quagga mussel larvae were identified in the Snake River near Twin Falls, Idaho, approximately 280 river kilometers upstream of the Washington border and 680 river kilometers upstream of the Snake-Columbia River confluence (Washington Invasive Species Council 2023). Subsequently, quagga mussel larvae have been detected in Idaho waters at Shoshone Falls Pool, Pillar Falls, and Twin Falls Reservoir located upriver of the Twin Falls hydroelectric facility (Idaho State Department of Agriculture 2024). Additionally, zebra mussels were found in aquarium moss balls at pet stores in Washington in 2021 and 2024. However, neither zebra nor quagga mussels have been detected in Washington’s natural waterways (WDFW 2024b).

Washington↗

USGS2025

Seasonal movements and demographics of the endangered White River Spinedace to inform restoration and translocation

Objective Translocation is a tool being explored to restart extirpated populations or facilitate new populations of endangered spring-dependent fish populations. Our objective was to provide information on habitat requirements for endangered White River Spinedace Lepidomeda albivallis during all seasons of the year and the population demographics that are necessary to plan conservation translocations of this species Methods We tagged and released White River Spinedace with passive integrated transponders during four twice-a-year events. Fish were subsequently recaptured or detected on six passive antennas placed throughout the Flag Springs Complex, Nevada. We evaluated movement data to understand seasonal habitat use patterns, used a Barker model to estimate monthly survival rates, adjusted counts to account for capture probability and estimate abundance, and applied reverse-time mark–recapture models to estimate recruitment to 70 mm total length. Results White River Spinedace were more active but used similar habitats during spawning seasons than during nonspawning seasons. Median life expectancy was about 5 months after tagging, and only 1% of adult White River Spinedace survived 3–4 years posttagging. The estimated population size in the Flag Springs Complex during our sampling period (November 2020 to June 2022) was fewer than a thousand White River Spinedace, and this estimate has been steady or slightly increasing. Conclusions Complex spring habitats with water temperatures ranging about 13°C to 21°C that are free from piscivorous fish are appropriate for White River Spinedace. The White River Spinedace population at Flag Springs is small but stable or increasing in size.

Transactions of the American Fisheries Society↗

USGS2025

Effect of oxygenation and location on survival and growth of endangered Lost River Suckers in net pens

Acclimation of captively reared fishes to their release environment through soft releases and cage culture can improve survival. Recovery strategies for imperiled Lost River Suckers Deltistes luxatus includes soft releases of captive reared juveniles in net pens in Upper Klamath Lake, Oregon. However, intermittent and sometimes extreme hypoxia in the lake can reduce juvenile fish survival in net pets. To ensure juvenile fish receive adequate oxygen for growth and survival, net pens can be placed in areas of higher oxygen concentration or oxygen can be supplemented. We experimented with a low-cost oxygenation system in Upper Klamath Lake net pens and its effects on survival and growth of juvenile Lost River Suckers. Pairs of net pens, one with supplemental oxygen and one without, were located at a deep offshore site with historically higher oxygen concentration called Mid North and a shallow near shore site with historically lower oxygen concentration called Fish Banks. Survival of passive integrated transponder tagged juvenile Lost River Suckers was monitored and evaluated with Kaplan-Meier survival analyses. We measured two full water column hypoxia events at Fish Banks during the study period, but none at the Mid North site. Oxygenation decreased the number of hours oxygen concentration was less than and pH was greater than known lethal and sublethal thresholds for juvenile Lost River Suckers. For juvenile Lost River Suckers that survived the entire July to September study period, growth was faster at Mid North than Fish Banks. Additionally, there was faster growth at the oxygenated than non-oxygenated Fish Bank’s site, whereas growth was faster at the non-oxygenated than oxygenated Mid North site. Survival did not differ between Mid North net pens, and the Fish Banks oxygenated net pen had greater survival compared to the non-oxygenated Fish Banks net pen during our study. Lost River Sucker growth and survival are dependent on net pen site selection and a low-cost oxygenation system can prevent mass mortality because of summertime hypoxia in shallow freshwater ecosystems.

Oregon↗

USGS2024

Adult green sturgeon (Acipenser medirostris) movements in the Sacramento–San Joaquin River Delta, California, December 2020–January 2023

The U.S. Army Corps of Engineers American River Watershed Common Features project (ACRF) seeks to reduce flood risk for the City of Sacramento, California, and surrounding areas. The project includes levee-remediation measures to address seepage, stability, erosion, and height concerns as well as the widening of the Sacramento Weir and Bypass. The project reach is in the lower extent of the Sacramento River migration corridor for the federally threatened southern Distinct Population Segment of North American green sturgeon ( Acipenser medirostris ). To establish baseline migratory behavior, we examined adult green sturgeon transit through the project area prior to construction. Biologists from the U.S. Army Corps of Engineers collected and tagged 55 adult green sturgeon with acoustic and passive integrated transponders, near Hamilton City, California, at river kilometer 332 of the Sacramento River each fall from 2020 to 2022. To evaluate fish movements, we deployed five acoustic detection sites at river kilometers 101, 90, 76, and 21 on the Sacramento River and in Tule Canal near the Sacramento Bypass at river kilometer 101 of the Sacramento River. The acoustic receivers detected nearly all tagged fish moving downstream through the ARCF study area during the same water year (October 1–September 30) in which they were tagged. Three fish released in October of 2020 arrived at the ARCF study area more than 362 days later in October 2021. The timing of tagged fish movements was associated with increases in river flow and not hour of day. Adult green sturgeon moved downstream from January to August when streamflows exceeded 15,000 cubic feet per second. During water year 2023 and the critically dry water year 2022, fish moved with the first peaks in flow occurring from mid-October to early January. Fish tagged in the critically dry water year 2021 entered the ARCF study area over an extended period from January to October, when flows remained around 10,000 cubic feet per second all year. Fish moved quickly between sites within the ARCF study area and generally spent less than 1 hour at each detection site.

California↗

USGS2024

A machine learning tool for design of behavioral fish barriers in the Sacramento-San Joaquin River Delta

Executive Summary Survival of out-migrating juvenile salmonids ( Oncorhynchus spp.) through the Sacramento-San Joaquin River Delta averages less than 33 percent, depending on water flow through the delta, and is partially governed by the distribution of fish among three Sacramento River distributaries: Sutter, Steamboat, and Georgiana sloughs. Behavioral altering structures in the junctions of the distributaries can effectively increase entrainment into favorable routes, thereby increasing through-delta (Verona to Chips Island, California) survival. The effectiveness of these structures, hence forth called “behavioral barriers,” are dependent on shape, length, location, barrier type, and water velocity, which is governed by Sacramento River discharge (hereinafter referred to as “flow”). We developed a machine learning tool to optimize behavioral barrier designs at up to three junctions within the Sacramento-San Joaquin Delta for improving through-delta survival of juvenile winter-run Chinook salmon ( Oncorhynchus tshawytscha ). This barrier optimization tool (BOT) works by evolving barrier solutions in one to three junctions by repeatedly simulating survival of populations of Sacramento River origin fish as they pass through the Delta. Over approximately 6,000 simulations per junction, the BOT converges on barrier designs that result in the greatest average survival given simulated environmental conditions. Survival at each iteration of the model is simulated using a modified version of the salmon travel time and routing simulation (STARS) model. In the BOT, STARS is modified by replacing probabilistic route determinations with an individual based model (IBM) that simulates fish behavior to predict the entrainment rates in each junction. The IBM allows the flexibility to explore how entrainment changes with evolving barrier designs. We used juvenile winter-run-sized Chinook salmon catch data collected at Knights Landing from 1997 to 2011 to create realistic arrival and spatial distributions of simulated fish within the BOT that varied among water years (hereafter years). We demonstrated the capabilities of the BOT by comparing optimized barrier solutions and their resulting simulated improvement in survival among three scenarios that differed in the number of junctions with barriers (Georgiana Slough, Steamboat Slough, or both) and the barrier operational period (early: November 1–March 15, or late: January 1–April 30). In this initial demonstration of the BOT we only considered a bioacoustic fish fence (BAFF) at Georgiana Slough and a floating fish guidance structure (FFGS) at Steamboat Slough. The increase in simulated through-delta fish survival ranged from 1.0 to 6.3 percent among the optimized barrier designs. The most effective Georgiana Slough barrier design predicted improved survival by 6.3 percent and was chosen by the California Department of Water Resources (DWR) as the Georgiana Slough salmon migratory barrier planned for operation annually from 2023 to 2030 at Georgiana Slough in response to the 2020 California Department of Fish and Wildlife’s (CDFW) Incidental Take Permit Minimization Measure 8.9.1 (California Department of Fish and Wildlife [CDFW], 2020). When barriers were simulated in both junctions, the percentages of simulated winter-run Chinook salmon interacting with a barrier at Steamboat or Georgiana sloughs were 95 percent given the early operational period and 48 percent given the late operational period. When barriers were simulated at both sloughs, the optimal barrier at Steamboat Slough effectively routed fish into the Sacramento River. This is because the Georgiana Slough barrier reduced routing into Georgiana Slough where survival is low, which resulted in higher survival for fish routed down the Sacramento River at Steamboat Slough than fish routed down Steamboat Slough. Whereas when no barrier was simulated at Georgiana Slough, the optimized barrier at Steamboat Slough routed fish into Steamboat Slough. This is because survival was higher through Steamboat Slough than the Sacramento River and Georgiana Slough combined. The greatest improvement in survival (6.3 percent) was predicted over the earlier operational period with only a barrier at Georgiana Slough.

California↗

USGS2023

Does release size into net-pens affect survival of captively reared juvenile endangered suckers in Upper Klamath Lake?

Objective High juvenile mortality prevents recruitment into the adult populations of endangered Shortnose Sucker Chasmistes brevirostris and Lost River Sucker Deltistes luxatus in Upper Klamath Lake, Oregon. To address the lack of recruitment, the U.S. Fish and Wildlife Service implemented the Sucker Assisted Rearing Program (SARP). Managers developing the rearing program lack information about how length at release relates to survival. To determine how initial length affects survival of captively reared juvenile suckers, we introduced juvenile suckers from the SARP into three net-pens in Upper Klamath Lake. Methods The juvenile suckers ranged from 102 to 284 mm standard length, and each fish was tagged with a passive integrated transponder (PIT) tag. Fish were monitored continuously by PIT antennas and mortality was inferred when movements ceased. Result Estimated survival over 57 days was high in all net-pens (0.79–1.00) and remained high at two net-pens for 76 and 86 days. Adjusted survival curves resulting from a stratified Cox model with standard length as a covariate, indicated that length positively influenced predicted survival by as much as 41% at one site. During the study, pH and dissolved oxygen regularly exceeded no-effect thresholds at two sites and briefly reached lethal thresholds at the same two sites but did not coincide with the observed mortalities. Slower growth and the lowest survival were observed at the third site, where water quality never exceeded thresholds. Conclusion A larger release size and the location of the net-pen can improve the survivability of juvenile suckers in net-pens in Upper Klamath Lake.

Oregon↗

USGS2023

Validating a non-lethal method of aging endangered juvenile Lost River and Shortnose Suckers

Populations of imperiled Lost River Deltistes luxatus and Shortnose Chasmistes brevirostris suckers in Upper Klamath Lake, Oregon, are experiencing long-term decreases in abundance due to limited recruitment of juvenile suckers into the adult populations. Researchers use estimated ages based on fin rays to study environmental factors affecting year-class formation, generate annual juvenile sucker survival indices, and study variations in early life history. Biased or imprecise age estimates can lead to erroneous conclusions and have implications for age-based survival estimates, indications of recruitment, and growth estimators. We examined fin rays collected from individual suckers captured on multiple occasions and determined that juvenile suckers deposit a translucent increment on fin rays annually. Size-at-age data for suckers first captured as young as age 0 corroborated our finding of annual increment formation and indicate that the first increments are formed at age 1. We used edge and marginal increment analysis conducted on fin rays to determine the timing of annual increment formation. Our results indicate that increment formation occurs on fin rays of juvenile suckers from October to May and peaks between February and April.

Oregon↗

USGS2023

Water and endangered fish in the Klamath River Basin: Do Upper Klamath Lake surface elevation and water quality affect adult Lost River and Shortnose Sucker survival?

In the western United States, water allocation decisions often incorporate the needs of endangered fish. In the Klamath River basin, an understanding of temporal variation in annual survival rates of Shortnose Suckers Chasmistes brevirostris and Lost River Suckers Deltistes luxatus and their relation to environmental drivers is critical to water management and sucker recovery. Extinction risk is high for these fish because most individuals in the populations are approaching their maximum life span and recruitment of new fish into the adult populations has never exceeded mortality losses in the past 22 years. We used a time series of mark–recapture data from the years 1999–2021 to analyze the relationship between lake level, water quality covariates, and survival of adult Shortnose Suckers and two spawning populations of Lost River Suckers in Upper Klamath Lake, Oregon. We compared competing model hypotheses in a maximum likelihood framework using Akaike's information criterion and then ran the top environmental covariates in a Bayesian framework to estimate how much of the variation in survival was explained by these covariates as compared to random variation. The complementary analyses found almost unequivocal support for our base model without environmental covariates. Estimated adult sucker survival was high across the time series and consistent with sucker life history (mean annual survival = 0.82–0.91). This suggests that adult suckers were generally robust to interannual variation in lake levels as well as consistently poor water quality within the years of our data set. Recovery time is limited, as a declining survival trend for adult suckers in recent years may be due to the onset of senescence. The successful recovery of suckers in Upper Klamath Lake may rely on shifting research from the causes of adult mortality and its relationship with lake surface elevation to the causes of poor recruitment into adult populations.

California, Oregon↗

USGS2023

Endangered Klamath suckers

Since Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) hatched in the early 1990s, almost none of the fish have survived to adulthood. When full grown, Lost River suckers are the largest of the Klamath suckers, averaging about two and a half feet long, whereas shortnose suckers are at around twenty-one inches. Rather than an inability to spawn, these species are limited by very high mortality within the first year or two of life. There are many hypothesized causes of high juvenile sucker mortality, including poor water quality, diseases aggravated by warming water temperatures, and the reduction in wetland habitat that provides food and cover. The number of adult endangered Lost River and shortnose suckers in Upper Klamath Lake, the primary remaining habitat for these species, declined by 65 to 85 percent between 2001 and 2020. Extinction is increasingly likely for these species unless their population trajectories can be changed. The Klamath Tribes, the U.S. government, the State of Oregon, and several nonprofits are working together to prevent sucker extinction in the Klamath Basin.

Oregon↗

USGS2022

Growth, survival, and cohort formation of juvenile Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2020 monitoring report

Executive Summary Populations of federally endangered Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir (hereinafter, Clear Lake), California, are experiencing long-term decreases in abundance. Upper Klamath Lake populations are decreasing not only because of adult mortality, which is relatively low, but also because they are not being balanced by recruitment of young adult suckers into known adult spawning aggregations. Long-term monitoring of juvenile sucker populations is conducted to (1) determine if there are annual and species-specific differences in production, survival, and growth, (2) better understand when juvenile sucker mortality is greatest, and (3) help identify potential causes of high juvenile sucker mortality particularly in Upper Klamath Lake. The U.S. Geological Survey (USGS) monitoring program, begun in 2015, tracks cohorts through summer months and among years in Upper Klamath and Clear Lakes. Data on juvenile suckers captured in trap nets are used to provide information on annual variability in age-0 sucker apparent production, juvenile sucker apparent survival, apparent growth, species composition, and health. Upper Klamath Lake indices of year-class strength suggest that the 2020 age-0 cohort is one of the lowest since standardized monitoring began. Despite apparently low over-winter survival, the relatively large 2019 cohort persisted in our 2020 samples and continues to contribute to the populations. Although the 2019 cohort age-0 suckers were composed mainly of Lost River suckers, the age-1 suckers from the 2019 cohort were mainly shortnose suckers. Lost River suckers comprised the largest proportion of the 2020 year-class and were only captured in July and August. Shortnose suckers were mainly captured in August and September and comprised a smaller proportion of the 2020 year-class. Age distribution of suckers captured in Clear Lake indicates greater juvenile survival than in Upper Klamath Lake. Most juvenile suckers captured were age-3 and age-4 suckers classified as the combination of Klamath largescale suckers ( Catostomus snyderi ) and shortnose suckers from the Lost River Basin, from the 2016 and 2017 cohorts. A lack of age-0 suckers captured in Clear Lake during years with the low inflow or lake levels initially lead us to believe that low water prevented spawning and year class formation. However, recent data indicate that some cohorts that were not captured as age-0 suckers were detected in later years at age-1 or age-2. This finding indicates that juvenile suckers in Clear Lake may spend one or more years in the tributaries or that sampling efficacy for age-0 suckers varies among years because of water depth. The first 5 years of this monitoring program indicated different patterns in recruitment and survival of juvenile suckers between Upper Klamath and Clear Lakes. Since the monitoring program began in 2015, age-0 sucker catch rates, interpreted as indices of year-class strength, were greatest in Upper Klamath Lake in 2016 and 2019. In those years Lost River suckers made up the majority of age-0 sucker catches; however, in 2017 and 2020 the age-1 sucker catches from these cohorts were mainly composed of shortnose suckers or suckers with genetic markers of both Klamath largescale and shortnose suckers, indicating a low overwinter survival for Lost River suckers even when the age-0 catches were high. Age-0 suckers do not fully recruit to our sampling gear in Upper Klamath Lake until August, experience high mortality by September, and are almost undetectable by the following July or August in most years. In Clear Lake, suckers frequently are not captured until age-1 or age-2 and annual survival appears much greater.

California, Oregon↗

USGS2021

Growth, survival, and cohort formation of juvenile Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2019 Monitoring Report

Populations of federally endangered Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir (hereinafter, Clear Lake), California, are experiencing long-term decreases in abundance. Upper Klamath Lake populations are decreasing not only due to adult mortality, which is relatively low, but also because they are not being balanced by recruitment of young adult suckers into known adult spawning aggregations. Long-term monitoring of juvenile sucker populations is conducted to (1) determine if there are annual and species-specific differences in production, survival, and growth, (2) better understand when juvenile sucker mortality is greatest, and (3) help identify potential causes of high juvenile sucker mortality particularly in Upper Klamath Lake. The U.S. Geological Survey monitoring program, that began in 2015, tracks cohorts through summer months and among years in Upper Klamath and Clear Lakes. Data on juvenile suckers captured in trap nets are used to provide information on annual variability in age-0 sucker apparent production, juvenile sucker apparent survival, apparent growth, species composition, and health. Upper Klamath Lake indices of year-class strength indicated that the 2019 year-class was the strongest in the past 5 years of monitoring. Low detections of age-1 and older suckers indicate that the 2018 cohort experienced poor survival within the first year of life. Shortnose suckers constituted the smallest proportion and suckers with uncertain species identification constituted the largest proportion of the 2019 year-class. Small numbers of Lost River sucker were captured consistently throughout the sampling season. The relative abundance of age-0 suckers is not a good indicator of year-class strength in Clear Lake. There were no age-0 suckers captured in Clear Lake during the 2015 and 2019 sampling seasons. Most suckers captured were age-1 Klamath largescale/shortnose suckers, which indicated a relatively strong 2018 cohort. Four-year old juveniles from the 2015 cohort were present in 2019 in Clear Lake. Cohorts that do not recruit to our sampling gear until a year or more of age seem to indicate that (1) a stream resident life history is contributing to the lake population and (2) juvenile suckers occupy the Willow Creek drainage for a full year or more. Although these suckers could be either the non-endangered Klamath largescale or the endangered shortnose suckers, a stream resident life history is consistent with these fish being Klamath largescale suckers. Survival of all distinguishable taxa of juvenile suckers is much higher in Clear Lake than in Upper Klamath Lake, with non-trivial numbers of suckers surviving to join spawning aggregations in most years.

California, Oregon↗

USGS2021

Water quality, instream habitat, and the distribution of suckers in the upper Lost River watershed of Oregon and California, summer 2018

Executive Summary Endangered Lost River ( Deltistes luxatus) and shortnose ( Chasmistes brevirostris ) suckers primarily use lotic habitats during the spring spawning season in the Upper Klamath Lake watershed. However, summer-time surveys of the upper Lost River watershed in 1972, 1975 and 1989–90 indicated that adults of both endangered species use tributaries of Clear Lake Reservoir (hereafter: Clear Lake) year-round. Adult shortnose suckers have also been documented to use tributaries of Gerber Reservoir year-round. We surveyed the tributaries of Clear Lake and Gerber Reservoir to provide up-to-date information on the timing, distribution, and habitat use within the upper Lost River drainage by these two endangered sucker species. Contrary to previous studies, this study did not capture any Lost River suckers in the Clear Lake tributaries. Genetics samples from suckers collected during this study were used to verify that no Lost River suckers were captured. At the time of this study, genetics could not identify the differences between shortnose and the non-endangered Klamath largescale suckers ( Catostomus snyderi ), therefore, morphology was used to separate these two species. Furthermore, the shortnose suckers and the Klamath largescale suckers documented in the upper Lost River drainage are more similar to Klamath largescale suckers than shortnose suckers that exist in the Upper Klamath Lake recovery unit. Therefore, the suckers we documented during our surveys were most likely Klamath largescale suckers. We captured suckers, age-0 to age-9, in the Clear Lake tributaries within stream pools and flooded meadows behind water retention structures. However, no suckers were collected in small reservoirs sampled upstream of Clear Lake. Suckers were found in habitats with mud and fine substrate at depths of 0.5–3.0 meters, with most captured at 1.0 meter or less. Suckers co-occurred with nonnative species, which were more abundant in our survey than in previous surveys in the tributaries to Clear Lake. Gerber Reservoir tributaries yielded more suckers per unit effort than Clear Lake tributaries. All suckers captured in the tributaries of Gerber Reservoir were identified as Klamath Largescale suckers. The suckers in tributaries to Gerber Reservoir were collected in similar habitat as those in Clear Lake tributaries and were age-0 to age-6.

California, Oregon↗

USGS2021

Dynamics of endangered sucker populations in Clear Lake Reservoir, California

Executive Summary In collaboration with the Bureau of Reclamation, the U.S. Geological Survey began a consistent monitoring program for endangered Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Clear Lake Reservoir, California, in fall 2004. The program was intended to improve understanding of the Clear Lake Reservoir populations because they are important to recovery efforts for these species. We report results from the ongoing program and include sampling efforts through fall 2019. We summarize catches and passive integrated transponder (PIT) tagging efforts from trammel net sampling in the fall seasons (September–October each year) and detections of PIT-tagged suckers on remote antennas in the spring in each year from 2006 to 2019. We also combine the data from physical captures and remote detections in capture-recapture models to provide estimates of annual survival for suckers in the reservoir. A lack of genetic distinctiveness between shortnose suckers and Klamath largescale suckers ( Catostomus snyderi ) in the Lost River subbasin, including Clear Lake Reservoir, is a likely cause of past difficulty in identification of these species. Field identification can be subjective for many captured individuals, and very few individuals were identified as Klamath largescale suckers in the most recent years of our monitoring program. For this report, we combine individuals that were identified as either shortnose sucker (SNS) or Klamath largescale sucker (KLS) into a single “SNS-KLS” group for most analyses. Identification of Lost River suckers (LRS) is based on external morphological characteristics.

California↗

USGS2021

Survival and growth of suckers in mesocosms at three locations within Upper Klamath Lake, Oregon, 2018

Executive Summary Due to high mortality in the first year or two of life, Lost River ( Deltistes luxatus sp.) and Shortnose suckers ( Chasmistes brevirostris sp.) in Upper Klamath Lake, Oregon rarely reach maturity. In 2015, the U.S. Fish and Wildlife Service began the Sucker Assisted Rearing Program (SARP) to improve early life survival before releasing the fish back into Upper Klamath Lake. Survival and growth rates were compared for fish in mesocosms among three potential release or in-lake rearing sites, and in a pond at the SARP rearing facility. Fish used in this study included a mix of Lost River, Shortnose, and Klamath largescale suckers reared at either U.S. Fish and Wildlife Service or Klamath Tribes fish rearing facilities. These sites were Shoalwater Bay (SWB), Rattlesnake Point (RPT), and Cove Point (CPT). Ninety-nine to 103 suckers tagged with passive integrated transponders (PIT) were placed into each mesocosm for up to 80 days and up to 103 days in the SARP pond. Cessation of movement, as determined by passive detection of tagged fish on remote antennas, indicated mortality. Dissolved-oxygen saturation, temperature, and pH were tracked hourly in each mesocosm. All the suckers placed into the SWB mesocosm died during an extreme hypoxia event. These fish were replaced with another 120 PIT-tagged and 2 untagged hatchery-reared Lost River suckers from the Klamath Tribes Fish Research Facility (KTFRF), of which, all but two died during a second extreme hypoxia event. It was determined that SWB was an unsuitable site for summertime release or rearing of juvenile suckers in 2018. The summer survival rate was ≥86 percent at CPT, RPT, and the SARP pond. Suckers in the SARP pond grew slightly slower and gained less weight relative to increases in length than suckers held at RPT and CPT. All suckers sampled at the start of the study from both the SARP facility and the KTFRF, when water temperatures averaged approximately 18–22 degrees Celsius (°C), were infected with low levels of the gill parasite Ichthyobodo sp. Ichthyobodo sp. was detected on only 1 of 16 suckers sampled from CPT, RPT, and the SARP pond in late September or early October when water temperatures were approximately 16–19 °C, indicating fish were able to shed the parasite in cooler temperatures. Water quality conditions at RPT and CPT were adequate for in-lake rearing of SARP suckers in 2018. Due to interannual differences in water quality conditions, these sites may not be suitable in all years. Future research focused on the suitability of RPT, CPT and other potential sites under in years with varying conditions would be beneficial for improving sucker in-lake rearing practices. Additional research could help to elucidate how size at entry into the mesocosms affects sucker survival.

Oregon↗

USGS2021

Effect of temperature on survival of Lost River Suckers with a natural infection of Ichthyobodo spp.

To compensate for low natural survival of endangered Lost River Suckers Deltistes luxatus , the U.S. Fish and Wildlife Service and the Klamath Tribes have initiated captive rearing programs. We conducted laboratory experiments intended to determine the temperature for optimum growth of juvenile Lost River Suckers; however, due to an unanticipated infection with Ichthyobodo spp., we instead estimated survival in conjunction with temperature and parasite loads. Ichthyobodo spp. are common parasites that infest fish skin and gills; they are known to be present in Upper Klamath Lake and have been found in fish at both the federal and tribal fish-rearing facilities. All fish held at mean temperatures of 16°C and 19°C survived the entire 65-d experiment, whereas the median time to death was 27 d at 22°C, 8 d at 24°C, and 7 d at 26°C. Gill samples from all Lost River Suckers tested positive for Ichthyobodo spp. DNA, with a trend toward higher copy numbers in suckers that were held at a mean temperature of 22°C or warmer compared to those held at 19°C or cooler. Fish kept at all temperatures grew slowly. These results suggest that survival of Lost River Suckers with a natural infection of Ichthyobodo spp. was significantly impacted by temperature.

North American Journal of Aquaculture↗

USGS2020

Juvenile Lost River and shortnose sucker year-class formation, survival, and growth in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2018 monitoring report

Executive Summary Populations of federally endangered Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir (hereinafter Clear Lake), California, are experiencing long-term decreases in abundance. Upper Klamath Lake populations are decreasing not only because of adult mortality, which is relatively low, but also because they are not being balanced by recruitment of young adult suckers into known adult spawning aggregations. Long-term monitoring of juvenile sucker populations is conducted to (1) determine if there are annual and species-specific differences in production, survival, and growth; (2) better understand when juvenile sucker mortality is greatest, and (3) help identify potential causes of high juvenile sucker mortality, particularly in Upper Klamath Lake. The U.S. Geological Survey monitoring program, which began in 2015, tracks cohorts through summer months and among years in Upper Klamath and Clear Lakes. Data on juvenile suckers captured in trap nets are used to provide information on annual variability in age-0 sucker apparent production, juvenile sucker apparent survival, apparent growth, species composition, and health. Juvenile sucker year-class strength and apparent survival were low in 2018 in Upper Klamath Lake. Most juvenile sucker mortality occurs within the first year of life. The Upper Klamath Lake year-class strength indices for Lost River and shortnose suckers in 2018 were the lowest they had been since the start of monitoring in 2015. The annual catch rates of shortnose sucker remained consistently low, whereas Lost River sucker catch rates varied. The capture of only four age-1 and older suckers from Upper Klamath Lake during the 2018 sampling season indicated low annual survival of the 2017 cohort. Annual production indices of juvenile suckers in Clear Lake are highly variable and potentially affected by seasonal connections to spawning habitat in Willow Creek. A total of seven age-0 shortnose or Klamath largescale suckers ( Catostomus snyderi ) were captured from Clear Lake in 2018, which was a relatively wet year, indicating that a small cohort was formed or that there was a delay in the recruitment of age-0 suckers. The 2018 sampling continued to detect recruitment of juveniles from the 2015 cohort to the lake. Given the dysconnectivity between Willow Creek and Clear Lake during the 2015 spawning season, the continued recruitment of young fish of this cohort to the lake may be attributed to reproduction by resident suckers in Willow Creek. Suckers younger than age-3 in Clear Lake could be identified as either shortnose or Klamath largescale suckers. A stream resident life history, if it were occurring, is consistent with these fish being Klamath largescale suckers. Survival of all distinguishable taxa of juvenile suckers is much higher in Clear Lake than in Upper Klamath Lake, with non-trivial numbers of suckers surviving to join spawning aggregations.

California, Oregon↗