Geology topics

Stephen Riley

Publications and source records attributed to Stephen Riley.

15 recordsLinked to original sources

USGS2021

Reproduction

Lake charr Salvelinus namaycush are typically fall spawners although one ecotype has populations that spawn during spring and fall (siscowets in Lake Superior). Lake charr are iteroparous (reproduce more than once in a lifetime) with group-synchronous ovarian development and typically spawn once per year. However, lake charr may not reproduce every year, a phenomenon known as skipped spawning. Free embryos are active on spawning reefs, make diurnal vertical movements from spawning substrate, and feed exogenously much earlier than previously assumed. The abundance of food and predators strongly affects the rate of development, yolk sac absorption, and duration of residence on spawning sites. The necessity for, and timing of, gas bladder inflation, and mechanisms for inflation without access to the surface, need further study. The low survival of free embryos due to thiamine deficiency has likely contributed to the lack of recruitment of lake charr in the Laurentian Great Lakes for decades. Thiaminase, a thiamine-degrading enzyme, appears to be the causal agent for thiamine deficiency in Great Lakes lake charr.

Great Lakes↗

USGS2021

Distribution

The lake charr Salvelinus namaycush is restricted in its native distribution to oligotrophic fresh waters of northern North America largely within the extent of the Pleistocene glaciations. It is the only freshwater species in northwest North America that does not occur in Siberia. A GIS-based native occurrence map linked to the HydroLAKES database does not extend the lake charr range but provides more comprehensive occurrence data than previous maps. The total waterbody area of lakes occupied by lake charr (451,304 km 2 ) is 40% of the total waterbody area across the range. Lake charr occur from 42.020901 latitude in the south to 74.420800 in the north and from −62.700000 longitude in the east to −161.173090 in the west. Lake charr lakes range in surface area from 3.4 to 8,210,000 ha (mean = 9715 ha; median = 191 ha), maximum depth from 2.7 to 614 m, and elevation from sea level to 2035 m ASL (mean = 381 m; median = 366 m). Glaciation, water temperature, dissolved oxygen, depth, and nutrient content are the main variables associated with lake charr native distribution in lakes. Life history variation, physiology, and ecological opportunity are the most likely drivers of lake charr dispersal and colonization.

Book chapter↗

USGS2020

A synthesis of the biology and ecology of sculpin species in the Laurentian Great Lakes and implications for the adaptive capacity of the benthic ecosystem

The Laurentian Great Lakes have experienced recent ecosystem changes that could lead to reductions in adaptive capacity and ultimately a loss of biodiversity and production throughout the food web. Observed changes in Great Lakes benthic communities include declines of native species and widespread success of invasive species like dreissenid mussels in all but Lake Superior. Understanding the ecology of native benthic deepwater preyfish and the reasons for their declines is important for predicting future losses in adaptive capacity and diversity, as well as managing the Great Lakes ecosystem to avoid such losses. Native sculpin species ( Cottus bairdii , C. cognatus , C. ricei , Myoxocephalus thompsonii ) historically were among the most abundant of the Great Lakes native deepwater benthic preyfish community and are an important link between offshore benthic and pelagic food webs. With one exception, these species have declined in abundance throughout the Great Lakes in recent years, but relatively little is known about their biology and ecology. This review synthesizes the available knowledge for the Great Lakes sculpin species and provides suggestions for future research efforts, which include understanding reproductive ecology and spawning behavior, connectivity and dispersal of populations, early life history, and influences of interactions with native and non-native species.

Great Lakes↗

USGS2020

Thiamine concentrations in lake trout and Atlantic salmon eggs during 14 years following the invasion of alewife in Lake Champlain

Thiamine (vitamin B 1 ) deficiency in Great Lakes salmonines has been linked to consumption of alewife Alosa pseudoharengus . Thiamine deficiency has been recognized as a possible impediment to lake trout Salvelinus namaycush recruitment in the Great Lakes and Atlantic salmon Salmo salar recruitment in the Finger Lakes and Baltic Sea. Alewife invaded Lake Champlain in 2003 which provided an opportunity to investigate changes in thiamine concentrations in salmonine predators during an alewife invasion. We monitored egg unphosphorylated and total thiamine concentrations in lake trout and Atlantic salmon in 2004 and 2007–2019, assessed whether concentrations were associated with mortality, and examined thiaminase activity in alewife. Total thiamine concentrations in lake trout and Atlantic salmon were significantly lower than in 2004 for seven of the ten collection years for lake trout and for nine of the 12 collection years for Atlantic salmon. Mortality and signs of thiamine deficiency were observed in laboratory-reared Atlantic salmon free embryos but not in lake trout. Average thiaminase activity in adult alewife declined from 5200 pmol/g/min in 2006 to 1500 pmol/g/min in 2012. Our results provide further evidence that a diet that includes alewife reduces egg thiamine concentrations in salmonines. This effect was observed within four years of the invasion of alewife.

Vermont↗

USGS2020

Evidence of spawning by lake trout Salvelinus namaycush on substrates at the base of large boulders in northern Lake Huron

Identification of lake trout spawning sites has focused on cobble substrates associated with bathymetric relief (e.g., ‘contour’ or ‘slope’ along reefs), but this ‘model’ may be narrow in scope. Previous telemetry work conducted near Drummond Island, USA, Lake Huron, identified egg presence in substrates at the base of large boulders (>1 m diameter); however, the extent of this phenomenon was unknown. Telemetry data paired with multi-beam bathymetry identified a 0.63 km 2 area used by lake trout characterized by low bathymetric relief and numerous (~269) large boulders (>1 m diameter) with small-diameter substrates at their bases. Diver surveys revealed egg presence at all 40 boulders surveyed, exclusively associated with clean gravel-cobble (0.6–42 cm) substrates in undercut areas beneath overhanging edges of boulders and in narrow spaces between adjacent boulders. Egg presence was not associated with boulder or substrate physical characteristics which highlighted the possible importance of interstitial currents. Successful incubation in these habitats was inferred by capture of free embryos and post-embryos the following spring using traps and an electrofishing ROV although at lower densities than at popular spawning habitats nearby (1–3 km away). Free embryos and post-embryos were also caught where eggs were not observed the previous fall including unexpectedly on top of boulders which suggested that post-hatch stages may move more than previously thought. Extensive use of boulder-associated habitats for spawning, egg incubation, and early growth suggested this undescribed habitat type may provide an unanticipated contribution to total available lake trout spawning habitat and recruitment in the Great Lakes.

Lake Huron↗

USGS2020

Diet and bathymetric distribution of juvenile Lake Trout Salvelinus namaycush in Lake Huron

Rehabilitation efforts for Lake Trout Salvelinus namaycush in Lake Huron have resulted in increased capture of young wild Lake Trout in annual bottom trawl surveys conducted by the U.S. Geological Survey. To better understand the ecology of juvenile (<400mm) Lake Trout, we summarized the spatial distribution of their capture in bottom trawls at six ports in Lake Huron during October/November 20082017 and analyzed diets of wild (n = 306 of 337 total) and hatchery-origin (n = 18 of 30 total) fish captured. Lake Trout ranged in size from 27 to 399mm, representing at least three age-classes, and 92% were wild origin. Most wild juvenile Lake Trout (83%) were captured at 4664 m depths at the two northernmost ports, typically below the thermocline. Mysis diluviana was the most prevalent prey type, found in 75% of wild fish with non-empty stomachs, followed by two non-native species: Spiny Water Flea Bythotrephes longimanus (31%) and Round Goby Neogobius melanostomus (12%). Small Lake Trout (<185mm) consumed invertebrates but transitioned to mostly fish-based diets by >185mm (age 2). The variety of taxa consumed by young Lake Trout increased with length. Further declines in Mysis populations due to increased predation pressure after the loss of Diporeia from the system may hinder the recovery of wild Lake Trout, and although they have been able to utilize invasive species as prey, impacts to Lake Trout growth remain unknown. Additional research on the habitat use and diets of wild juvenile Lake Trout may provide insight into the reasons behind the recent successful natural reproduction and recruitment of Lake Trout in Lake Huron.

Lake Huron↗

USGS2019

A conceptual framework for the identification and characterization of lacustrine spawning habitats for native lake charr Salvelinus namaycush

Lake charr Salvelinus namaycush are endemic to the formerly glaciated regions of North America and spawn primarily in lakes, unlike most other Salmoninae. Spawning habitats for lake charr are thought to be characterized by relatively large substrate particle sizes which provide sufficient interstitial spaces for egg incubation, but little is known about the physical processes that create or maintain suitable habitats. We review the literature on lake charr spawning habitat and present a conceptual framework that examines the roles of physical variables in creating the appropriate conditions for egg incubation. A critical underlying assumption of this framework is that lake charr will select spawning habitats that provide suitable hypolentic flows for egg incubation. We suggest that the characterization of lakebed surface roughness, current patterns, substrate particle size, and groundwater flows at multiple spatial scales may yield significant insight into the physical mechanisms supporting lacustrine spawning habitats for lake charr and will be useful in creating predictive models of these habitats. This framework may also apply to other lake-spawning lithophilic fish species.

Environmental Biology of Fishes↗

USGS2018

Evidence of repeated long-distance movements by lake charr Salvelinus namaycush in Lake Huron

Movements and dispersal distances of acoustically-tagged adult lake charr Salvelinus namaycush were estimated based on detections at acoustic receivers in Lake Huron during 2010–2014. Most lake charr were detected only at receivers proximate to their release location or were not detected at all, but 3–9% of tagged lake charr were detected at receivers located over 100 km from their release location. Several fish made extensive repeated migrations within the lake, some at the scale of the entire main basin. Our observations show that some lake charr individuals repeat a similar pattern each year of moving long distances, and some fish were observed to show annual fidelity to presumed foraging sites in the spring at a spatial scale of approximately 200 km. Our telemetry-based estimates were minimum estimates of dispersal, as the placement of receivers within Lake Huron was not optimal for detection of lake charr and did not cover the majority of the lake. Further study of long-distance movement in lake charr is necessary to fully understand the implications of this behavior to lake charr ecology, population dynamics, and management in the Great Lakes.

Lake Huron↗

USGS2018

Acoustic telemetry observation systems: challenges encountered and overcome in the Laurentian Great Lakes

The Great Lakes Acoustic Telemetry Observation System (GLATOS), organized in 2012, aims to advance and improve conservation and management of Great Lakes fishes by providing information on behavior, habitat use, and population dynamics. GLATOS faced challenges during establishment, including a funding agency-imposed urgency to initiate projects, a lack of telemetry expertise, and managing a flood of data. GLATOS now connects 190+ investigators, provides project consultation, maintains a web-based data portal, contributes data to Ocean Tracking Network’s global database, loans equipment, and promotes science transfer to managers. The GLATOS database currently has 50+ projects, 39 species tagged, 8000+ fish released, and 150+ million tag detections. Lessons learned include (1) seek advice from others experienced in telemetry; (2) organize networks prior to when shared data is urgently needed; (3) establish a data management system so that all receivers can contribute to every project; (4) hold annual meetings to foster relationships; (5) involve fish managers to ensure relevancy; and (6) staff require full-time commitment to lead and coordinate projects and to analyze data and publish results.

Laurentian Great Lakes↗

USGS2017

Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America

Previous studies of lake trout, Salvelinus namaycush , spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry to locate, describe and compare lake trout spawning habitats. Adult lake trout were implanted with acoustic transmitters and tracked during five consecutive spawning seasons in a 19–27 km 2 region of the Drummond Island Refuge, Lake Huron, using the VEMCO Positioning System. Acoustic telemetry revealed discrete areas of aggregation on at least five reefs in the study area, subsequently confirmed by divers to contain deposited eggs. Notably, several identified spawning sites would likely not have been discovered using traditional methods because either they were too small and obscure to stand out on a bathymetric map or because they did not conform to the conceptual model of spawning habitat held by many biologists. Our most unique observation was egg deposition in gravel and rubble substrates located at the base of and beneath overhanging edges of large boulders. Spawning sites typically comprised <10% of the reef area and were used consistently over the 5-year study. Evaluation of habitat selection from the perspective of fish behaviour through use of acoustic transmitters offers potential to expand current conceptual models of critical spawning habitat.

Ecology of Freshwater Fish↗

USGS2017

Movement patterns and spatial segregation of two populations of lake trout Salvelinus namaycush in Lake Huron

Movement ecology is an important component of life history and population dynamics, and consequently its understanding can inform successful fishery management decision-making. While lake trout populations in Lake Huron have shown signs of recovery from near extinction in recent years, knowledge of their movement behavior remains incomplete. We used acoustic telemetry to describe and compare movement patterns of two Lake Huron lake trout populations: Drummond Island and Thunder Bay. Both populations showed high spawning site fidelity, with no evidence of co-mingling during non-spawning season. Detections between spawning periods were mainly limited to receivers within 100 km of spawning locations, and suggested that the two populations likely remained segregated throughout the year. Drummond Island fish, which spawn inside the Drummond Island Refuge, primarily dispersed east into Canadian waters of Lake Huron, with 79–92% of fish being detected annually on receivers outside the refuge. In contrast, Thunder Bay fish tended to disperse south towards Saginaw Bay. Large proportions (i.e., > 80%) of both populations were available to fisheries outside the management zone containing their spawning location. Thunder Bay fish moved relatively quickly to overwinter habitat after spawning, and tended to repeat the same post-spawning movement behavior each year. The consistent, predictable movement of both populations across management zones highlights the importance of understanding population dynamics to effective management of Lake Huron lake trout.

Journal of Great Lakes Research↗

USGS2016

Islands in the ice stream: were spawning habitats for native salmonids in the Great Lakes created by paleo-ice streams?

Lake trout Salvelinus namaycush , lake whitefish Coregonus clupeaformis and cisco Coregonus artedi are salmonid fishes native to the Laurentian Great Lakes that spawn on rocky substrates in the fall and early winter. After comparing the locations of spawning habitat for these species in the main basin of Lake Huron with surficial substrates and the hypothesized locations of fast-flowing Late Wisconsinan paleo-ice streams, we hypothesize that much of the spawning habitat for these species in Lake Huron is the result of deposition and erosion by paleo-ice streams. This hypothesis may represent a new framework for the identification and protection of spawning habitat for these native species, some of which are currently rare or extirpated in some of the Great Lakes. We further suggest that paleo-ice streams may have been responsible for the creation of native salmonid spawning habitat elsewhere in the Great Lakes and in other glaciated landscapes.

Lake Huron↗

USGS2016

Observations of cocooned Hydrobaenus (Diptera: Chironomidae) larvae in Lake Michigan

Larvae of the family Chironomidae have developed a variety of ways to tolerate environmental stress, including the formation of cocoons, which allows larvae to avoid unfavorable temperature conditions, drought, or competition with other chironomids. Summer cocoon formation by younger instars of the genus Hydrobaenus Fries allows persistence through increased temperatures and/or intermittent dry periods in arid regions or temporary habitats, but this behavior was not observed in the Great Lakes until the current study. Cocoon-aestivating Hydrobaenus sp. larvae were found in benthic grab samples collected in 2010–2013 near Sleeping Bear Dunes National Lakeshore in northern Lake Michigan with densities up to 7329/m 2 . The aestivating species was identified as Hydrobaenus johannseni (Sublette, 1967), and the associated chironomid community was typical for an oligotrophic nearshore system. Hydrobaenus cocoon formation in the Great Lakes was likely previously unnoticed due to the discrepancies between the genus' life history and typical benthos sampling procedures which has consequences for describing chironomid communities where Hydrobaenus is present.

Michigan↗

USGS2014

Bacterial pathogen gene abundance and relation to recreational water quality at seven Great Lakes beaches

Quantitative assessment of bacterial pathogens, their geographic variability, and distribution in various matrices at Great Lakes beaches are limited. Quantitative PCR (qPCR) was used to test for genes from E. coli O157:H7 ( eae O157 ), shiga-toxin producing E. coli ( stx2 ), Campylobacter jejuni ( mapA ), Shigella spp. ( ipaH ), and a Salmonella enterica -specific ( SE ) DNA sequence at seven Great Lakes beaches, in algae, water, and sediment. Overall, detection frequencies were mapA > stx2 > ipaH > SE > eae O157 . Results were highly variable among beaches and matrices; some correlations with environmental conditions were observed for mapA , stx2 , and ipaH detections. Beach seasonal mean mapA abundance in water was correlated with beach seasonal mean log 10 E. coli concentration. At one beach, stx2 gene abundance was positively correlated with concurrent daily E. coli concentrations. Concentration distributions for stx2 , ipaH , and mapA within algae, sediment, and water were statistically different (Non-Detect and Data Analysis in R). Assuming 10, 50, or 100% of gene copies represented viable and presumably infective cells, a quantitative microbial risk assessment tool developed by Michigan State University indicated a moderate probability of illness for Campylobacter jejuni at the study beaches, especially where recreational water quality criteria were exceeded. Pathogen gene quantification may be useful for beach water quality management.

Environmental Science & Technology↗

USGS2008

Understanding the ecology of disease in Great Lakes fish populations

Disease may be an important factor affecting wild fish population dynamics in the Great Lakes, but a lack of information on the ecology of fish disease currently precludes the prediction of risks to fish populations. Here we propose a conceptual framework for conducting ecologically-oriented fish health research that addresses the inter-relationships among fish health, fish populations, and ecosystem dysfunction in the Great Lakes. The conceptual framework describes potential ways in which disease processes and the population-level impacts of disease may relate to ecosystem function, and suggests that functional ecosystems are more likely to be resilient with respect to disease events than dysfunctional ecosystems. We suggest that ecosystem- or population-level research on the ecology of fish disease is necessary to understand the relationships between ecosystem function and fish health, and to improve prediction of population-level effects of diseases on wild fish populations in the Great Lakes. Examples of how the framework can be used to generate research questions are provided using three disease models of current interest in the Great Lakes: thiamine deficiency complex, botulism, and bacterial kidney disease.

Great Lakes↗