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Stephen C. Brown

Publications and source records attributed to Stephen C. Brown.

At least 19 recordsLinked to original sources

The collective application of shorebird tracking data to conservation

Addressing urgent conservation issues, such as the drastic declines of North American migratory birds, requires creative, evidence-based, efficient, and collaborative approaches. The abundance of over 50% of monitored North American shorebird populations has declined by over 50% since 1980. To address these declines, we developed a partnership of scientists and practitioners called the Shorebird Science and Conservation Collective (hereafter the collective ). The collective was founded to translate the combined findings of shorebird tracking data into on-the-ground conservation action. With advice from an advisory group, the collective acts as an intermediary whereby dedicated staff collate and analyze data contributions from scientists to support knowledge requests from conservation practitioners. In its first three years, data contributions from 75 organizations include over 7.1 million shorebird observations forming movement paths of 3420 individuals representing 36 species tracked across the Americas and have informed 18 conservation projects spanning education, land and species management, land conservation, and policy requests. Others engaged in translational science from big data could consider similar knowledge-sharing models that prioritize usable data products, foster collaborative engagement between science experts and practitioners, build focused communities around topics or taxonomic groups, and employ a proof-of-concept phase to develop scalable solutions while making progress toward long-term funding to sustain impact. As the volume of scientific data continues to grow, intermediaries, such as the collective, can be vital liaisons to rapidly integrate and interpret research to support conservation action. Dedicated to the memory of Shiloh Schulte and his conservation achievements for shorebirds.

Conservation Biology

Breeding shorebird surveys in the Arctic National Wildlife Refuge, Alaska, suggest population declines over two decades for most species

Shorebird populations are declining globally but it generally remains unclear how those declines translate to changes at the regional scale. We conducted the first longitudinal surveys of breeding shorebirds in Alaska under the Program for Regional and International Shorebird Monitoring (PRISM), resurveying the Coastal Plain (1002 Area) of the Arctic National Wildlife Refuge (NWR) in 2019 and 2022 to compare with initial surveys conducted in 2002 and 2004. Our goals were to (1) estimate contemporary population sizes of breeding shorebirds across this 6,249 km 2 area, and (2) assess population trends for the species detected in both survey periods. We estimated population sizes for 16 species, with a combined total of 135,178 (95% CI: 113,532–156,824) in 2019 and 2022—a decline of approximately 17% (90% CI: –34% to + 3%) from 2002 and 2004 when the same survey methods were used. Four species showed a statistically significant decrease (α = 0.10): Calidris alpina arcticola (Dunlin), Limnodromus scolopaceus (Long-billed Dowitcher), Phalaropus lobatus (Red-necked Phalarope), and P. fulicarius (Red Phalarope). Only C. melanotos (Pectoral Sandpiper) showed a significant increase. Overall, 5 of 10 species—and all species combined—had a > 90% probability of decline. Population changes for the polygamous species (i.e., Phalaropus sp. and C. melanotos ), which show irruptive breeding and low breeding site fidelity, may reflect temporary immigration or emigration driven by annual environmental variation, rather than true population change. Nevertheless, the overall pattern of declines aligns with migration surveys outside the Arctic. These findings highlight the vulnerability of Arctic-breeding shorebirds to threats throughout their annual cycles and underscore the potential for sustained long-term monitoring in this rapidly changing region to inform effective, flyway-scale conservation strategies across the Western Hemisphere.

Alaska

Power source, data retrieval method, and attachment type affect success of dorsally mounted tracking tag deployments in 37 species of shorebirds

Animal-borne trackers are commonly used to study bird movements, including in long-distance migrants such as shorebirds. Selecting a tracker and attachment method can be daunting, and methodological advancements often have been made by trial and error and conveyed by word of mouth. We synthesized tracking outcomes across 2745 dorsally mounted trackers on 37 shorebird species around the world. We evaluated how attachment method, power source, data retrieval method, relative tracker mass, and biological traits affected success, where success was defined as whether or not each tag deployment reached its expected tracking duration (i.e. all aspects succeeded for the intended duration of the study: attachment, tracking, data acquisition, and bird survival). We conducted separate analyses for tag deployments with remote data retrieval (‘remote-upload tag deployments') and those that archived data and had to be recovered (‘archival tag deployments'). Among remote-upload tag deployments, those that were a lighter mass relative to the bird, were beyond their first year of production, transmitted data via satellite, or were attached with a leg-loop harness were most often successful at reaching their expected tracking duration. Archival tag deployments were most successful when applied at breeding areas, or when applied to males in any season. Remote-upload tag deployments with solar power, satellite data retrieval, or leg-loop harnesses continued tracking for longer than those with battery power, other types of data retrieval, or glue attachments. However, the majority of tag deployments failed to reach their expected tracking duration (71% of remote-upload, 83% of archival), which could have been due to tracker failure, attachment failure, or bird mortality. Our findings highlight that many tag deployments may fail to meet the goals of a study if tracking duration is crucial. Using our results, we provide guidelines for selecting a tracker and attachment to improve success at meeting study goals.

Journal of Avian Biology

Reducing bias in shorebird nest survival rates across a large Arctic landscape

Reproductive success is a key demographic parameter that can have profound impacts on a species' population trend. Indeed, poor reproductive success has been suggested as a contributing factor to the declines observed in many species of birds, including Arctic-breeding shorebirds. However, the available information on Arctic-breeding shorebird nest survival is restricted to a limited number of non-random locations where proximity to human settlements and traditional invasive monitoring techniques may artificially alter nest predation rates and, thus, bias results. To accurately assess reproductive success, unbiased estimates are needed. In this study, we monitored 96 shorebird nests (six species) at 41 randomly selected sites across a large Arctic landscape (1219 km 2 area of the Arctic National Wildlife Refuge) using minimally invasive techniques (i.e. single nest visits, temperature loggers and cameras) in 2019 and 2022. Overall, daily survival was 0.975 (95% CI: 0.955–0.987), which translates to a 53% (95% CI: 32–72%) probability of a shorebird nest surviving the median (25 days) incubation period for the studied species. Camera footage indicated Arctic Foxes Vulpes lagopus were the primary nest predator (85% of identified predation events), but Parasitic Jaegers Stercorarius parasiticus and Sandhill Cranes Grus canadensis also contributed to nest loss. In both years, greater nest failure occurred in the northwest and northcentral regions of our study area, potentially the result of greater shorebird abundance and density-dependent predation rates. Nest survival rates obtained in this study were the same as those obtained in a previous large geographical study that monitored shorebird nests across numerous small, non-randomly selected, high-density shorebird field sites that employed intensive human monitoring techniques. However, site-specific and annual differences in predator and shorebird species and densities make direct comparisons to previous studies difficult. Continued monitoring using methods that minimize bias and are consistent across time are needed to accurately measure true changes in nest survival rates that may occur under a changing climate and with increased human development.

Alaska

A circumpolar study unveils a positive non-linear effect of temperature on arctic arthropod availability that may reduce the risk of warming-induced trophic mismatch for breeding shorebirds

Seasonally abundant arthropods are a crucial food source for many migratory birds that breed in the Arctic. In cold environments, the growth and emergence of arthropods are particularly tied to temperature. Thus, the phenology of arthropods is anticipated to undergo a rapid change in response to a warming climate, potentially leading to a trophic mismatch between migratory insectivorous birds and their prey. Using data from 19 sites spanning a wide temperature gradient from the Subarctic to the High Arctic, we investigated the effects of temperature on the phenology and biomass of arthropods available to shorebirds during their short breeding season at high latitudes. We hypothesized that prolonged exposure to warmer summer temperatures would generate earlier peaks in arthropod biomass, as well as higher peak and seasonal biomass. Across the temperature gradient encompassed by our study sites (>10°C in average summer temperatures), we found a 3-day shift in average peak date for every increment of 80 cumulative thawing degree-days. Interestingly, we found a linear relationship between temperature and arthropod biomass only below temperature thresholds. Higher temperatures were associated with higher peak and seasonal biomass below 106 and 177 cumulative thawing degree-days, respectively, between June 5 and July 15. Beyond these thresholds, no relationship was observed between temperature and arthropod biomass. Our results suggest that prolonged exposure to elevated temperatures can positively influence prey availability for some arctic birds. This positive effect could, in part, stem from changes in arthropod assemblages and may reduce the risk of trophic mismatch.

Global Change Biology

Why do avian responses to change in Arctic green-up vary?

Global climate change has altered the timing of seasonal events (i.e., phenology) for a diverse range of biota. Within and among species, however, the degree to which alterations in phenology match climate variability differ substantially. To better understand factors driving these differences, we evaluated variation in timing of nesting of eight Arctic-breeding shorebird species at 18 sites over a 23-year period. We used the Normalized Difference Vegetation Index as a proxy to determine the start of spring (SOS) growing season and quantified relationships between SOS and nest initiation dates as a measure of phenological responsiveness. Among species, we tested four life history traits (migration distance, seasonal timing of breeding, female body mass, expected female reproductive effort) as species-level predictors of responsiveness. For one species (Semipalmated Sandpiper), we also evaluated whether responsiveness varied across sites. Although no species in our study completely tracked annual variation in SOS, phenological responses were strongest for Western Sandpipers, Pectoral Sandpipers, and Red Phalaropes. Migration distance was the strongest additional predictor of responsiveness, with longer-distance migrant species generally tracking variation in SOS more closely than species that migrate shorter distances. Semipalmated Sandpipers are a widely distributed species, but adjustments in timing of nesting relative to variability in SOS did not vary across sites, suggesting that different breeding populations of this species were equally responsive to climate cues despite differing migration strategies. Our results unexpectedly show that long-distance migrants are more sensitive to local environmental conditions, which may help them to adapt to ongoing changes in climate.

Article

Alaska's climate sensitive Yukon-Kuskokwim Delta supports seven million Arctic-breeding shorebirds, including the majority of six North American populations

Baseline information about declining North American shorebird populations is essential to determine the effects of global warming at low-lying coastal areas of the Arctic and subarctic, where numerous taxa breed, and to assess population recovery throughout their range. We estimated population sizes on the Yukon-Kuskokwim Delta in western Alaska on the eastern edge of the Bering Sea. We conducted ground-based surveys during 2015 and 2016 at 589 randomly selected plots from an area of 35,769 km 2 . We used stratified random sampling in 8 physiographic strata and corrected population estimates using detection ratios derived from double sampling on a subset of plots. We detected 11,110 breeding individuals of 21 taxa. Western Sandpiper ( Calidris mauri ), Red-necked Phalarope ( Phalaropus lobatus ), Dunlin (subspecies C. alpina pacifica ), and Wilson’s Snipe ( Gallinago delicata ) were the most abundant taxa. We estimated that ~6.9 million individual shorebirds were breeding on the entire Yukon-Kuskokwim Delta in 2015 and 2016. Our surveys of this region provided robust population estimates (CVs ≤ 0.35) for 14 species. Our results indicate that the Yukon-Kuskokwim Delta supports a large proportion of North America’s breeding populations of the Pacific Golden-Plover ( Pluvialis fulva ), the western population of a Whimbrel subspecies ( Numenius phaeopus hudsonicus ), a Bar-tailed Godwit subspecies ( Limosa lapponica baueri ), Black Turnstone ( Arenaria melanocephala ), a Dunlin subspecies ( Calidris alpina pacifica ), and Western Sandpiper. Our study highlights the importance to breeding shorebirds of this relatively pristine but climatically sensitive deltaic system. Estuaries and deltaic systems worldwide are rapidly being degraded by anthropogenic activities. Our population estimates can be used to refine prior North American population estimates, determine effects of global warming, and evaluate conservation success by measuring population change over time.

Alaska

Exploratory analysis of machine learning techniques in the Nevada geothermal play fairway analysis

Play fairway analysis (PFA) is commonly used to generate geothermal potential maps and guide exploration studies, with a particular focus on locating and characterizing blind geothermal systems. This study evaluates the application of machine learning techniques to PFA in the Great Basin region of Nevada. Following the evaluation of various techniques, we identified two approaches to PFA that produced promising results, 1) supervised Bayesian probabilistic neural networks to generate geothermal potential maps with confidence intervals, and 2) unsupervised principal component analysis paired with k-means clustering to generate both cluster maps to help identify spatial patterns, as well as new combined feature inputs. We applied these techniques to perform a comparative analysis between two principal sets of geological and geophysical features related to permeability and heat and a set of positive (known geothermal resources) and negative training sites (known drill sites with unsuitable geothermal conditions). We found that these methods constrain previously unrecognized feature controls on geothermal favorability, many of which are spatially organized within the extent of cluster groups and the major structural-hydrologic domains of the study area. Furthermore, we utilized exploratory unsupervised modeling to highlight spatial relationships between input data and predictive output results of our supervised modeling. Finally, we demonstrate how our models compare to the previous Nevada PFA and how the rapid insights these machine learning techniques offer may support future assessments of both known and undiscovered blind geothermal systems in the Great Basin region of Nevada and beyond.

Nevada

Predictors of invertebrate biomass and rate of advancement of invertebrate phenology across eight sites in the North American Arctic

Average annual temperatures in the Arctic increased by 2–3 °C during the second half of the twentieth century. Because shorebirds initiate northward migration to Arctic nesting sites based on cues at distant wintering grounds, climate-driven changes in the phenology of Arctic invertebrates may lead to a mismatch between the nutritional demands of shorebirds and the invertebrate prey essential for egg formation and subsequent chick survival. To explore the environmental drivers affecting invertebrate availability, we modeled the biomass of invertebrates captured in modified Malaise-pitfall traps over three summers at eight Arctic Shorebird Demographics Network sites as a function of accumulated degree-days and other weather variables. To assess climate-driven changes in invertebrate phenology, we used data from the nearest long-term weather stations to hindcast invertebrate availability over 63 summers, 1950–2012. Our results confirmed the importance of both accumulated and daily temperatures as predictors of invertebrate availability while also showing that wind speed negatively affected invertebrate availability at the majority of sites. Additionally, our results suggest that seasonal prey availability for Arctic shorebirds is occurring earlier and that the potential for trophic mismatch is greatest at the northernmost sites, where hindcast invertebrate phenology advanced by approximately 1–2.5 days per decade. Phenological mismatch could have long-term population-level effects on shorebird species that are unable to adjust their breeding schedules to the increasingly earlier invertebrate phenologies.

Alaska, Newfoundland, Northwest Territories

Annual adult survival drives trends in Arctic-breeding shorebirds but knowledge gaps in other vital rates remain

Conservation status and management priorities are often informed by population trends. Trend estimates can be derived from population surveys or models, but both methods are associated with sources of uncertainty. Many Arctic-breeding shorebirds are thought to be declining based on migration and/or overwintering population surveys, but data are lacking to estimate the trends of some shorebird species. In addition, for most species, little is known about the stage(s) at which population bottlenecks occur, such as breeding vs. nonbreeding periods. We used previously published and unpublished estimates of vital rates to develop the first large-scale population models for 6 species of Arctic-breeding shorebirds in North America, including separate estimates for 3 subspecies of Dunlin. We used the models to estimate population trends and identify life stages at which population growth may be limited. Our model for the arcticola subspecies of Dunlin agreed with previously published information that the subspecies is severely declining. Our results also linked the decline to the subspecies’ low annual survival rate, thus potentially implicating factors during the nonbreeding period in the East Asian-Australasian Flyway. However, our trend estimates for all species showed high uncertainty, highlighting the need for more accurate and precise estimates of vital rates. Of the vital rates, annual survival had the strongest influence on population trend in all taxa. Improving the accuracy, precision, and spatial and temporal coverage of estimates of vital rates, especially annual survival, would improve demographic model-based estimates of population trends and help direct management to regions or seasons where birds are subject to higher mortality.

The Condor

Ecological insights from three decades of animal movement tracking across a changing Arctic

The Arctic is entering a new ecological state, with alarming consequences for humanity. Animal-borne sensors offer a window into these changes. Although substantial animal tracking data from the Arctic and subarctic exist, most are difficult to discover and access. Here, we present the new Arctic Animal Movement Archive (AAMA), a growing collection of more than 200 standardized terrestrial and marine animal tracking studies from 1991 to the present. The AAMA supports public data discovery, preserves fundamental baseline data for the future, and facilitates efficient, collaborative data analysis. With AAMA-based case studies, we document climatic influences on the migration phenology of eagles, geographic differences in the adaptive response of caribou reproductive phenology to climate change, and species-specific changes in terrestrial mammal movement rates in response to increasing temperature.

Science

Preliminary report on applications of machine learning techniques to the Nevada geothermal play fairway analysis

We are applying machine learning (ML) techniques, including training set augmentation and artificial neural networks, to mitigate key challenges in the Nevada play fairway project. The study area includes ~85 active geothermal systems as potential training sites and >12 geologic, geophysical, and geochemical features. The main goal is to develop an algorithmic approach to identify new geothermal systems in the Great Basin region. Major objectives include: 1) integrate ML techniques into the geothermal community; 2) develop open community datasets, whereby all play fairway and ML datasets and algorithms are publicly released and available for modification by various user groups; 3) identify data acquisition targets with high value for future work; 4) identify new signatures to detect blind geothermal systems; and 5) foster new capabilities for characterizing subsurface temperature and permeability. Initially, ML techniques are being applied to the same play fairway datasets and workflow. ML will then be applied to both enhanced and additional datasets, with modification of the PFA workflow to incorporate the new datasets. Finally, ML will be applied to define new workflows using the enhanced and additional datasets. An algorithmic approach that empirically learns to estimate weights of influence for diverse parameters can potentially scale and perform better than the play fairway analysis. Initial work on this project has involved 1) evaluating potential positive and negative training sites, 2) transformation of datasets into formats suitable for ML, and 3) initial development and testing of ML techniques.

Nevada

Machine learning for natural resource assessment: An application to the blind geothermal systems of Nevada

A study is underway to apply machine learning methods to evaluate natural resource potential. In particular, we are considering the search for blind geothermal systems in Nevada. Beginning with the data and experience from the previous Nevada play fairway analysis project, we are building models in TensorFlow/Keras and gaining experience toward predicting the geothermal resource potential as a probability map. During the first year of this project we have encountered several issues particular to using geological and geophysical data sets with these tools. Through an illustrative example we develop a promising workflow for future use as more data become available and are analyzed.

Nevada

Geographic variation in the intensity of warming and phenological mismatch between Arctic shorebirds and invertebrates

Responses to climate change can vary across functional groups and trophic levels, leading to a temporal decoupling of trophic interactions or ‘phenological mismatches.’ Despite a growing number of single-species studies that identified phenological mismatches as a nearly universal consequence of climate change, we have a limited understanding of the spatial variation in the intensity of this phenomenon nor what influences this variation. In this study, we tested for geographic patterns in phenological mismatches between six species of shorebirds and their invertebrate prey at ten sites spread across ~13º latitude and ~84º longitude in the Arctic over three years. At each site, we quantified the phenological mismatch between shorebirds and their invertebrate prey at: 1) an individual nest level, as the difference in days between the seasonal peak in food and the peak demand by chicks, and 2) a population level, as the overlapped area under fitted curves for total daily biomass of invertebrates and dates of the peak demand by chicks. We tested whether the intensity of past climatic change observed at each site corresponded with the extent of phenological mismatch and used Structural Equation Modeling to test for causal relationships among: 1) environmental factors, including geographic location and current climatic conditions, 2) the timing of invertebrate emergence and the breeding phenology of shorebirds, and 3) the phenological mismatch between the two trophic levels. The extent of phenological mismatch varied more among different sites than among different species within each site. A greater extent of phenological mismatch at both the individual-nest and population-levels coincided with changes in the timing of snowmelt as well as the potential dissociation of long-term snow phenology from changes in temperature. The timing of snowmelt also affected the shape of the food and demand curves, which determined the extent of phenological mismatch at the population level. Finally, we found larger mismatches at more easterly longitudes, which may be affecting the population dynamics of shorebirds, as two of our study species show regional population declines in only the eastern part of their range. This suggests that phenological mismatches may be resulting in demographic consequences for arctic-nesting birds.

Alaska

Effects of leg flags on nest survival of four species of Arctic‐breeding shorebirds

Marking wild birds is an integral part of many field studies. However, if marks affect the vital rates or behavior of marked individuals, any conclusions reached by a study might be biased relative to the general population. Leg bands have rarely been found to have negative effects on birds and are frequently used to mark individuals. Leg flags, which are larger, heavier, and might produce more drag than bands, are commonly used on shorebirds and can help improve resighting rates. However, no one to date has assessed the possible effects of leg flags on the demographic performance of shorebirds. At seven sites in Arctic Alaska and western Canada, we marked individuals and monitored nest survival of four species of Arctic‐breeding shorebirds, including Semipalmated Sandpipers ( Calidris pusilla ), Western Sandpipers ( C. mauri ), Red‐necked Phalaropes ( Phalaropus lobatus ), and Red Phalaropes ( P. fulicarius ). We used a daily nest survival model in a Bayesian framework to test for effects of leg flags, relative to birds with only bands, on daily survival rates of 1952 nests. We found no evidence of a difference in nest survival between birds with flags and those with only bands. Our results suggest, therefore, that leg flags have little effect on the nest success of Arctic‐breeding sandpipers and phalaropes. Additional studies are needed, however, to evaluate the possible effects of flags on shorebirds that use other habitats and on survival rates of adults and chicks.

Journal of Field Ornithology

Life‐history tradeoffs revealed by seasonal declines in reproductive traits of Arctic‐breeding shorebirds

Seasonal declines in breeding performance are widespread in wild animals, resulting from temporal changes in environmental conditions or from individual variation. Seasonal declines might drive selection for early breeding, with implications for other stages of the annual cycle. Alternatively, selection on the phenology of nonbreeding stages could constrain timing of the breeding season and lead to seasonal changes in reproductive performance. We studied 25 taxa of migratory shorebirds (including five subspecies) at 16 arctic sites in Russia, Alaska, and Canada. We investigated seasonal changes in four reproductive traits, and developed a novel Bayesian risk‐partitioning model of daily nest survival to examine seasonal trends in two causes of nest failure. We found strong seasonal declines in reproductive traits for a subset of species. The probability of laying a full four‐egg clutch declined by 8–78% in 12 of 25 taxa tested, daily nest survival rates declined by 1–12% in eight of 22 taxa, incubation duration declined by 2.0–2.5% in two of seven taxa, and mean egg volume declined by 5% in one of 15 taxa. Temporal changes were not fully explained by individual variation. Across all species, the proportion of failed nests that were depredated declined over the season from 0.98 to 0.60, while the proportion abandoned increased from 0.01 to 0.35 and drove the seasonal declines in nest survival. An increase in abandonment of late nests is consistent with a life‐history tradeoff whereby either adult mortality increased or adults deserted the breeding attempt to maximize adult survival. In turn, seasonal declines in clutch size and incubation duration might be adaptive to hasten hatching of later nests. In other species of shorebirds, we found no seasonal patterns in breeding performance, suggesting that some species are not subject to selective pressure for early breeding.

Journal of Avian Biology

Effects of environmental conditions on reproductive effort and nest success of Arctic‐breeding shorebirds

The Arctic is experiencing rapidly warming conditions, increasing predator abundance, and diminishing population cycles of keystone species such as lemmings. However, it is still not known how many Arctic animals will respond to a changing climate with altered trophic interactions. We studied clutch size, incubation duration and nest survival of 17 taxa of Arctic‐breeding shorebirds at 16 field sites over 7 years. We predicted that physiological benefits of higher temperatures and earlier snowmelt would increase reproductive effort and nest survival, and we expected increasing predator abundance and decreasing abundance of alternative prey (arvicoline rodents) to have a negative effect on reproduction. Although we observed wide ranges of conditions during our study, we found no effects of covariates on reproductive traits in 12 of 17 taxa. In the remaining taxa, most relationships agreed with our predictions. Earlier snowmelt increased the probability of laying a full clutch from 0.61 to 0.91 for Western Sandpipers, and shortened incubation by 1.42 days for arcticola Dunlin and 0.77 days for Red Phalaropes. Higher temperatures increased the probability of a full clutch from 0.60 to 0.93 for Western Sandpipers and from 0.76 to 0.97 for Red‐necked Phalaropes, and increased daily nest survival rates from 0.9634 to 0.9890 for Semipalmated Sandpipers and 0.9546 to 0.9880 for Western Sandpipers. Higher abundance of predators (foxes) reduced daily nest survival rates only in Western Sandpipers (0.9821–0.9031). In contrast to our predictions, the probability of a full clutch was lowest (0.83) for Semipalmated Sandpipers at moderate abundance of alternative prey, rather than low abundance (0.90). Our findings suggest that in the short‐term, climate warming may have neutral or positive effects on the nesting cycle of most Arctic‐breeding shorebirds.

Ibis