Geology topics

Scott D. George

Publications and source records attributed to Scott D. George.

49 records · Page 3Linked to original sources

USGS2016

Efficacy of environmental DNA to detect and quantify Brook Trout populations in headwater streams of the Adirondack Mountains, New York

Environmental DNA (eDNA) analysis is rapidly evolving as a tool for monitoring the distributions of aquatic species. Detection of species’ populations in streams may be challenging because the persistence time for intact DNA fragments is unknown and because eDNA is diluted and dispersed by dynamic hydrological processes. During 2015, the DNA of Brook Trout Salvelinus fontinalis was analyzed from water samples collected at 40 streams across the Adirondack region of upstate New York, where Brook Trout populations were recently quantified. Study objectives were to evaluate different sampling methods and the ability of eDNA to accurately predict the presence and abundance of resident Brook Trout populations. Results from three-pass electrofishing surveys indicated that Brook Trout were absent from 10 sites and were present in low (<100 fish/0.1 ha), moderate (100–300 fish/0.1 ha), and high (>300 fish/0.1 ha) densities at 9, 11, and 10 sites, respectively. The eDNA results correctly predicted the presence and confirmed the absence of Brook Trout at 85.0–92.5% of the study sites; eDNA also explained 44% of the variability in Brook Trout population density and 24% of the variability in biomass. These findings indicate that eDNA surveys will enable researchers to effectively characterize the presence and abundance of Brook Trout and other species’ populations in headwater streams across the Adirondack region and elsewhere.

New York↗

USGS2016

Effects of seasonal drawdowns on fish assemblages in sections of an impounded river-canal system in upstate New York

The Mohawk River and New York State Barge Canal run together as a series of permanent and temporary impoundments for most of the distance between Rome and Albany, New York. The downstream or lower section is composed of two permanent impoundments, the middle section of a series of temporary (seasonal) impoundments, and the upper section of a series of permanent impoundments. In the middle section, movable dams are lifted from the water during winter and the wetted surface area decreases by 36–56%. We used boat electrofishing during spring 2014 and 2015 to compare the relative abundance of fish populations and the composition of fish assemblages between the permanently and seasonally impounded sections of the Barge Canal and to infer the effects of the two flow management practices. A total of 3,264 individuals from 38 species were captured, and total catch per unit effort (CPUE) ranged from 46.0 to 134.7 fish/h at sites in the seasonally impounded section, compared with 140.0–342.0 fish/h in the permanent lower section and 89.0–282.0 fish/h in the permanent upper section. The amount of drawdown explained 55% of the variation in total CPUE and was a highly significant predictor variable. Mean total CPUE in the seasonally impounded section was significantly lower (by about 50%) than that in either permanently impounded section, and the assemblage composition differed significantly between sections. The relative abundance of many lentic species was markedly lower in the seasonally impounded section, while the relative abundance of several native cyprinids and the percentage of individuals belonging to species that are native to the watershed was greater in this section. Overall, these findings suggest that winter dam removal in impounded rivers may reduce the abundance of fish but may also create more natural riverine conditions that favor some native species.

New York↗

USGS2016

Toxicity of bed sediments from the Niagara River Area of Concern and tributaries, New York, to Chironomus dilutus and Hyalella azteca , 2014-15

The Niagara River was designated as an Area of Concern in 1987 on both the United States and Canadian sides of the international boundary line because past industrial discharges and hazardous waste sites had caused extensive degradation of aquatic habitats. The degradation of the “benthos”, or the benthic macroinvertebrate community, was identified as one of seven beneficial use impairments caused by contaminated bed sediments. The U.S. Geological Survey and the New York State Department of Environmental Conservation, in cooperation with the U.S. Environmental Protection Agency, conducted a study in 2014 and 2015 to gather more extensive data on (a) the toxicity of bed sediments and (b) the status of macroinvertebrate communities on the main stem and tributaries of the Niagara River. This report addresses the first component of that study (toxicity of bed sediments), and summarizes results from laboratory toxicity tests that compare the survival and growth of two macroinvertebrate species between bed sediments from study sites and laboratory controls. Sediment toxicity was negligible at most sites, however poor performance of one or both test species in bed sediments from several tributary sites suggests that the quality of sediments may be adversely affecting benthic macroinvertebrate communities in some tributaries to the Niagara River.

New York↗

USGS2016

Long-term trends in naturalized rainbow trout ( Oncorhynchus mykiss ) populations in the upper Esopus Creek, Ulster County, New York, 2009–15

The U.S. Geological Survey, in cooperation with Cornell Cooperative Extension of Ulster County, New York State Energy Research and Development Authority, the New York State Department of Environmental Conservation, and the New York City Department of Environmental Protection, surveyed fish communities annually on the main stem and tributaries of the upper Esopus Creek, Ulster County, New York, from 2009 to 2015. This report summarizes the density, biomass, and size structure of rainbow trout ( Oncorhynchus mykiss ) and brown trout ( Salmo trutta ) populations from the 2015 surveys along with data from the preceding 6 years. The mean density of rainbow trout populations in 2015 was 98 fish per 0.1 hectare, which was the highest value observed since 2010, and the mean biomass of rainbow trout populations in 2015 was 864 grams per 0.1 hectare, which was the highest value observed since 2012.

New York↗

USGS2016

Response of periphyton fatty acid composition to supplemental flows in the upper Esopus Creek, Catskill Mountains, New York

Fatty acid analysis of periphyton is an emerging tool for assessing the condition of a stream ecosystem on the basis of its water quality. The study presented in this report was designed to test the hypothesis that periphyton communities have a fatty acid profile that can detect excessive turbidity and suspended sediment. The fatty acid composition of periphyton was assessed during two seasons upstream and downstream from an underground aqueduct that provides supplemental flows, which are a potential source of turbidity and suspended sediment on the upper Esopus Creek, New York. These data were compared with measurements of periphyton standing crop, diatom community structure and integrity, and basic water-quality parameters. Periphyton standing crop and diatom community integrity indicated little evidence of impairment from the supplemental flows. The relative abundances of two physiologically important fatty acids, γ-linolenic acid (18:3ω6) and eicosapentaenoic acid (20:5ω3), were significantly lower downstream from the supplemental flows and multivariate analyses of fatty acid profiles identified significant differences between sites upstream and downstream from the supplemental flows. Individual fatty acids and summary metrics, however, were not significantly correlated with turbidity or suspended sediment. Together, these results indicate that the supplemental flows may cause some measurable effects but they do not constitute a major disturbance to the periphyton community on the upper Esopus Creek. Fatty acid analysis may have potential as a tool for monitoring changes in periphyton nutritional composition that may reflect water quality and ecosystem health but needs to be further evaluated around a more definitive source of water-quality impairment.

New York↗

USGS2016

Toxicity of waters from the Rochester Embayment Area of Concern to the plankton species Pseudokirchneriella subcapitata and Ceriodaphnia dubia

The lower Genesee River and Rochester Embayment of Lake Ontario are a designated Area of Concern (AOC) under the binational Great Lakes Water Quality Agreement. The “degradation of phytoplankton and zooplankton populations” or plankton Beneficial Use Impairment (BUI) was classified as unknown and in need of further assessment in this AOC because water quality data suggested plankton communities could be effected and community data were either unavailable or indicated impacts. The plankton BUI may now be obsolete because local contaminant sources have been largely eliminated. The present study was conducted between July 2013 and August 2014 to assess the BUI-removal criteria: “AOC plankton bioassays confirm that toxicity in ambient waters (i.e., no growth inhibition) is not significantly higher than comparable non-AOC controls”. Acute and chronic toxicity of waters from 13 sites were quantified seasonally using standardized bioassays with the green alga Pseudokirchneriella subcapitata and water flea Ceriodaphnia dubia to test the hypothesis that toxicity of waters from AOC sites was not higher than that of waters from comparable non-AOC reference sites. Survival and reproduction of C. dubia did not differ significantly between site types, systems, or months. The growth of P. subcapitata did not differ between site types, but differed among systems and months. All results indicate that waters from AOC sites were no more toxic to both plankton species than waters from reference sites. Assuming test species represent natural plankton assemblages, water quality should not negatively affect survival and growth of resident plankton populations in the Rochester Embayment AOC.

New York↗

USGS2016

Assessing condition of macroinvertebrate communities and sediment toxicity in the St. Lawrence River at Massena Area-of-Concern

In 1972, the USA and Canada agreed to restore the chemical, physical, and biological integrity of the Great Lakes ecosystem under the first Great Lakes Water Quality Agreement. In subsequent amendments, part of the St. Lawrence River at Massena, New York and segments of three tributaries, were designated as an Area of Concern (AOC) due to the effects of polychlorinated biphenyls (PCBs), lead and copper contamination, and habitat degradation and resulting impairment to several beneficial uses. Because sediments have been largely remediated, the present study was initiated to evaluate the current status of the benthic macroinvertebrate (benthos) beneficial use impairment (BUI). Benthic macroinvertebrate communities and sediment toxicity tests using Chironomus dilutus were used to test the hypotheses that community condition and sediment toxicity at AOC sites were not significantly different from those of adjacent reference sites. Grain size was found to be the main driver of community composition and macroinvertebrate assemblages, and bioassessment metrics did not differ significantly between AOC and reference sites of the same sediment class. Median growth of C. dilutus and its survival in three of the four river systems did not differ significantly in sediments from AOC and reference sites. Comparable macroinvertebrate assemblages and general lack of toxicity across most AOC and reference sites suggest that the quality of sediments should not significantly impair benthic macroinvertebrate communities in most sites in the St. Lawrence River AOC.

New York↗

USGS2016

Assessing Brook Trout populations in headwater streams of the Adirondack Mountains using environmental DNA -- Summary report

This project evaluated standard fish-survey and environmental DNA (eDNA) sampling methods to determine the ability of eDNA to accurately predict the presence and abundance of resident Brook Trout populations in 40 headwater streams mainly in the western Adirondack Mountains during 2014–2015 (Figure 2). Standard 3-pass electrofishing surveys found that Brook Trout were absent from about 25 percent of study sites, and at low densities in 25 percent of sites, moderate densities in 25 percent of sites, and high densities in 25 percent of sites. Environmental DNA results correctly predicted the presence/absence of Brook Trout in 85.0 to 92.5 percent of study sites and explained 44.0 percent of the variability in density and 24 percent of the variability in biomass of their populations. The findings indicate that eDNA surveys will enable researchers to effectively characterize the presence as well as the abundance of Brook Trout and other species populations in headwater streams across the Adirondack Mountains and elsewhere.

New York↗

USGS2015

Potential estrogenic effects of wastewaters on gene expression in Pimephales promelas and fish assemblages in streams of southeastern New York

Direct linkages between endocrine-disrupting compounds (EDCs) from municipal and industrial wastewaters and impacts on wild fish assemblages are rare. The levels of plasma vitellogenin (Vtg) and Vtg messenger ribonucleic acid (mRNA) in male fathead minnows (Pimephales promelas) exposed to wastewater effluents and dilutions of 17α-ethinylestradiol (EE2), estrogen activity, and fish assemblages in 10 receiving streams were assessed to improve understanding of important interrelations. Results from 4-d laboratory assays indicate that EE2, plasma Vtg concentration, and Vtg gene expression in fathead minnows, and 17β-estradiol equivalents (E2Eq values) were highly related to each other (R2 = 0.98–1.00). Concentrations of E2Eq in most effluents did not exceed 2.0 ng/L, which was possibly a short-term exposure threshold for Vtg gene expression in male fathead minnows. Plasma Vtg in fathead minnows only increased significantly (up to 1136 μg/mL) in 2 wastewater effluents. Fish assemblages were generally unaffected at 8 of 10 study sites, yet the density and biomass of 79% to 89% of species populations were reduced (63–68% were reduced significantly) in the downstream reach of 1 receiving stream. These results, and moderate to high E2Eq concentrations (up to 16.1 ng/L) observed in effluents during a companion study, suggest that estrogenic wastewaters can potentially affect individual fish, their populations, and entire fish communities in comparable systems across New York, USA.

New York↗

USGS2015

Didymosphenia geminata in the Upper Esopus Creek: current status, variability, and controlling factors

In May of 2009, the bloom-forming diatom Didymosphenia geminata was first identified in the Upper Esopus Creek, a key tributary to the New York City water-supply and a popular recreational stream. The Upper Esopus receives supplemental flows from the Shandaken Portal, an underground aqueduct delivering waters from a nearby basin. The presence of D . geminata is a concern for the local economy, water supply, and aquatic ecosystem because nuisance blooms have been linked to degraded stream condition in other regions. Here we ascertain the extent and severity of the D . geminata invasion, determine the impact of supplemental flows from the Portal on D . geminata , and identify potential factors that may limit D . geminata in the watershed. Stream temperature, discharge, and water quality were characterized at select sites and periphyton samples were collected five times at 6 to 20 study sites between 2009 and 2010 to assess standing crop, diatom community structure, and density of D . geminata and all diatoms. Density of D . geminata ranged from 0–12 cells cm -2 at tributary sites, 0–781 cells cm -2 at sites upstream of the Portal, and 0–2,574 cells cm -2 at sites downstream of the Portal. Survey period and Portal (upstream or downstream) each significantly affected D . geminata cell density. In general, D . geminata was most abundant during the November 2009 and June 2010 surveys and at sites immediately downstream of the Portal. We found that D . geminata did not reach nuisance levels or strongly affect the periphyton community. Similarly, companion studies showed that local macroinvertebrate and fish communities were generally unaffected. A number of abiotic factors including variable flows and moderate levels of phosphorous and suspended sediment may limit blooms of D . geminata in this watershed.

PLoS ONE↗

USGS2015

Variations in water temperature and implications for trout populations in the Upper Schoharie Creek and West Kill, New York, USA

Water temperature is a key component of aquatic ecosystems because it plays a pivotal role in determining the suitability of stream and river habitat to most freshwater fish species. Continuous temperature loggers and airborne thermal infrared (TIR) remote sensing were used to assess temporal and spatial temperature patterns on the Upper Schoharie Creek and West Kill in the Catskill Mountains, New York, USA. Specific objectives were to characterize (1) contemporary thermal conditions, (2) temporal and spatial variations in stressful water temperatures, and (3) the availability of thermal refuges. In-stream loggers collected data from October 2010 to October 2012 and showed summer water temperatures exceeded the 1-day and 7-day thermal tolerance limits for trout survival at five of the seven study sites during both summers. Results of the 7 August 2012 TIR indicated there was little thermal refuge at the time of the flight. About 690,170 m 2 of water surface area were mapped on the Upper Schoharie, yet only 0.009% (59 m 2 ) was more than 1.0 °C below the median water surface temperature (BMT) at the thalweg and no areas were more than 2.0 °C BMT. On the West Kill, 79,098 m 2 were mapped and 0.085% (67 m 2 ) and 0.018% (14 m 2 ) were BMT by 1 and 2 °C, respectively. These results indicate that summer temperatures in the majority of the study area are stressful for trout and may adversely affect growth and survival. Validation studies are needed to confirm the expectation that resident trout are in poor condition or absent from the downstream portion of the study area during warm-water periods.

New York↗

USGS2015

Effects of extreme floods on trout populations and fish communities in a Catskill Mountain river

Summary 1. Extreme hydrologic events are becoming more common with changing climate. Although the impacts of winter and spring ﬂoods on lotic ecosystems have been well studied, the effects of summer ﬂoods are less well known. 2. The Upper Esopus Creek Basin in the Catskill Mountains, NY, experienced severe ﬂooding from Tropical Storm Irene on 28 August 2011, and peak discharges exceeded the 0.01 annual exceedance probability (>100 year ﬂood) in some reaches. Three years of ﬁsh community data from pre-ﬂood surveys at nine sites were compared to data from 2 years of post-ﬂood surveys to evaluate changes in ﬁsh communities and populations of brown trout ( Salmo trutta ) and rainbow trout ( Oncorhynchus mykiss ). 3. Basinwide, ﬁsh assemblages were not strongly impacted and appeared highly resilient to the effects of the ﬂood. Total density and biomass of ﬁsh communities were greater at most sites 10-11 months after the ﬂood than 1 month prior to the ﬂood while richness and diversity were generally unchanged. Community composition did not differ signiﬁcantly between years or between the pre-and post-ﬂood periods. 4. Although the density of mature brown trout was low at most sites (mean density = 146 ﬁsh ha-1), young-of-the-year brown trout reached their highest density (mean = 2312 ﬁsh ha-1) during 2012. In contrast, rainbow trout densities declined substantially during the 5-year study and the 2012 year class was small (mean density = 222 ﬁsh ha-1). 5. Late summer ﬂoods may be less damaging to stream ﬁsh communities than winter or spring ﬂoods as spawning activity is negligible and early life stages of many species are generally larger and less susceptible to displacement and mortality. Additionally, post-ﬂood conditions may be advantageous for brown trout recruitment.

Freshwater Biology↗

USGS2015

Fish assemblages in the Upper Esopus Creek, NY: Current status, variability, and controlling factors

The Upper Esopus Creek receives water diversions from a neighboring basin through the Shandaken Tunnel (the portal) from the Schoharie Reservoir. Although the portal is closed during floods, mean flows and turbidity of portal waters are generally greater than in Esopus Creek above their confluence. These conditions could potentially affect local fish assemblages, yet such effects have not been assessed in this highly regulated stream. We studied water quality, hydrology, temperature, and fish assemblages at 18 sites in the Upper Esopus Creek during 2009–2011 to characterize the effects of the portal input on resident-fish assemblages and to document the status of the fishery resource. In general, fish-community richness increased by 2–3 species at mainstem sites near the portal, and median density and biomass of fish communities at sites downstream of the portal were significantly lower than they were at sites upstream of the portal. Median densities of Salmo trutta (Brown Trout) and all trout species were significantly lower than at mainstem sites downstream from the portal—25.1 fish/0.1 ha and 148.9 fish/0.1 ha, respectively—than at mainstem sites upstream from the portal—68.8 fish/0.1 ha and 357.7 fish/0.1 ha, respectively—yet median biomass for Brown Trout and all trout did not differ between sites from both reaches. The median density of young-of-year Brown Trout at downstream sites (9.3 fish/0.1 ha) was significantly lower than at upstream sites (33.9 fish/0.1 ha). Waters from the portal appeared to adversely affect the density and biomass of young-of-year Brown Trout, but lower temperatures and increased flows also improved habitat quality for mature trout at downstream sites during summer. These findings, and those from companion studies, indicate that moderately turbid waters from the portal had few if any adverse impacts on trout populations and overall fish communities in the Upper Esopus Creek during this study.

New York↗