Geology topics

Scott C. Brooks

Publications and source records attributed to Scott C. Brooks.

4 recordsLinked to original sources

USGS2026

Localization of spatiotemporally heterogeneous subsurface flows using autoencoder-based deep learning framework for time-lapse self-potential tomography

Self-potential (SP) monitoring has emerged as a valuable method for characterizing subsurface hydrogeological features and processes due to its sensitivity to fluid-induced electrokinetic effects. Despite advancements in SP inversion, challenges remain in imaging groundwater dynamics from SP activities due to complex hydrological settings and transient noise. In this study, a deep learning autoencoder (AE)-based framework is proposed for the spatiotemporal localization of subsurface fluid movement from time-lapse SP tomography. Temporal segments of time-lapse numerical inversions were first derived from long-term SP monitoring conducted from a floodplain site in Oak Ridge, Tennessee, known for active hyporheic exchange. Subsequently, AE models based on vision transformer (ViT), convolutional long short-term memory (ConvLSTM), convolutional neural network, and temporal convolutional network were individually trained and compared on the SP tomography segments for reconstruction performance. Finally, the reconstruction error over time serves as an anomaly score to identify moments of active SP variation, whereas spatial distributions of errors within these moments are analyzed to image and localize regions associated with anomalous subsurface fluid movement. The results demonstrate that ConvLSTM- and ViT-AE are most capable for the localization task with contrasting error distributions and consistent delineation of anomalies. Applying the method to both SP arrays parallel and perpendicular to the stream produced consistent anomaly zones near a fault or karst feature, validating the robustness and generalization of the approach. These results demonstrate the potential of the proposed framework as a scalable and interpretable tool for spatiotemporal analysis of subsurface flow dynamics in complex hydrogeological systems.

Tennessee↗

USGS2025

Imaging hyporheic exchange by integrating deep learning and physics-informed inversion of time-lapse self-potential data

Self-potential (SP) monitoring is increasingly used for subsurface flow characterization due to its sensitivity to hydrogeological and geochemical processes. However, SP inversion remains challenging due to its ill-posed nature, sparse data coverage, and strong transient noise. This study proposes a hybrid framework to image hyporheic exchange using a time-lapse SP data set monitored from a streamflow site in Oak Ridge, Tennessee. Dipole moment tomography grids generated from the physics-informed numerical inversion is first used to train a Vision Transformer (ViT) model that maps surface SP sequences to 2D source distributions. While the numerical method is more responsive to transient signals, the ViT model better captures persistent spatial structures. Their complementary outputs are jointly analyzed in the spatiotemporal domain to isolate dynamic hyporheic exchange zones and distinguish transient from steady state subsurface flow features. This approach integrates physical inversion and deep learning to enhance interpretability, generalization, and temporal awareness in SP analysis.

Geophysical Research Letters↗

USGS2024

Self-potential tomography preconditioned by particle swarm optimization— Application to monitoring hyporheic exchange in a bedrock river

A self-potential (SP) data-inversion algorithm was developed and tested on an analytical model of electrical-potential profile data attributed to single and multiple polarized electrical sources. The developed algorithm was then validated by an application to SP-monitoring field data measured on the floodplain of East Fork Poplar Creek, Oak Ridge, Tennessee, to image electrical sources in areas conducive to preferential flow into the flood plain from the bedrock-lined riverbed. The algorithm combined stochastic source-localization by particle-swarm-optimization (PSO) of electrical sources characterized by simplified geometries with source tomography by regularized weighted least-squares minimization of a quadratic objective function. Prior information was incorporated by preconditioning the tomography algorithm by PSO results. Variable percentages of random noise were added to analytical-model data to evaluate the algorithm performance. Results indicated that true parameters of single-source models were inverted and approximated with small residual error, whereas inversion of analytical-model data representing multiple electrical sources accurately approximated the locations of the sources but miscalculated some parameters because of the non-uniqueness of the inverse-model solution. Source tomography applied to analytical model data during testing produced a spatially continuous parameter field that identified the locations of point-scale synthetic dipole sources of electrical current flow with varying degrees of accuracy depending on the prior information incorporated into the tomography. When applied to SP-monitoring field data, the algorithm imaged electrical sources within a known fault that intersects the bedrock riverbed and flood plain of East Fork Poplar Creek and depicted dynamic electrical conditions attributed to hyporheic exchange.

Tennessee↗

USGS2024

Non-mercury methylating microbial taxa are integral to understanding links between mercury methylation and elemental cycles in marine and freshwater sediments

The goal of this study was to explore the role of non-mercury (Hg) methylating taxa in mercury methylation and to identify potential links between elemental cycles and Hg methylation. Statistical approaches were utilized to investigate the microbial community and biochemical functions in relation to methylmercury (MeHg) concentrations in marine and freshwater sediments. Sediments were collected from the methylation zone (top 15 cm) in four Hg-contaminated sites. Both abiotic (e.g., sulfate, sulfide, iron, salinity, total organic matter, etc.) and biotic factors (e.g., hgcA , abundances of methylating and non-methylating taxa) were quantified. Random forest and stepwise regression were performed to assess whether non-methylating taxa were significantly associated with MeHg concentration. Co-occurrence and functional network analyses were constructed to explore associations between taxa by examining microbial community structure, composition, and biochemical functions across sites. Regression analysis showed that approximately 80% of the variability in sediment MeHg concentration was predicted by total mercury concentration, the abundances of Hg methylating taxa, and the abundances of the non-Hg methylating taxa. The co-occurrence networks identified Paludibacteraceae and Syntrophorhabdaceae as keystone non Hg methylating taxa in multiple sites, indicating the potential for syntrophic interactions with Hg methylators. Strong associations were also observed between methanogens and sulfate-reducing bacteria, which were likely symbiotic associations. The functional network results suggested that non-Hg methylating taxa play important roles in sulfur respiration, nitrogen respiration, and the carbon metabolism-related functions methylotrophy, methanotrophy, and chemoheterotrophy. Interestingly, keystone functions varied by site and did not involve carbon- and sulfur-related functions only. Our findings highlight associations between methylating and non-methylating taxa and sulfur, carbon, and nitrogen cycles in sediment methylation zones, with implications for predicting and understanding the impact of climate and land/sea use changes on Hg methylation.

Environmental Pollution↗