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S. Beck

Publications and source records attributed to S. Beck.

3 recordsLinked to original sources

The FunAqua dataset of global fungal biodiversity in aquatic ecosystems

Advances in high-throughput DNA sequencing technologies have accelerated research on aquatic microorganisms, their diversity, and ecological functions. This has also significantly advanced research on fungi that shape aquatic ecosystems and food webs. Here, we present the FunAqua dataset, which describes global fungal biodiversity in aquatic ecosystems based on eukaryotic long-read metabarcoding data from 1,076 sediment and 1,299 filtered water samples collected across 1,452 sampling sites in 87 countries. We targeted the internal transcribed spacer (ITS) region. In total, 50,152 fungal OTUs were recorded. The sequencing data is accompanied by comprehensive sample metadata, including physicochemical data of water and sediments. The FunAqua dataset provides a new resource for analysing and better understanding the biodiversity of fungi in different types of aquatic habitats across biogeographical regions. The dataset described in this data paper will be periodically updated with additional metabarcoding data.

Scientific Data↗

Restoration is a partial but not complete solution for long-term declines in oyster populations—A case history from the northeastern Gulf of America

Objective We sought to evaluate whether oyster reef restoration is associated with sustained increases in intertidal eastern oyster Crassostrea virginica density in Suwannee Sound, Florida, and to examine how commercial fishing activity and freshwater discharge may modify those patterns. Methods We monitored intertidal oyster reefs for 14 years, including 9 years prior to large-scale restoration (completed in 2018) and 5 years of standardized postrestoration monitoring beginning in 2019 at Lone Cabbage Reef, an offshore intertidal reef complex that was rebuilt to target elevation using dolomite limestone. A Bayesian negative-binomial generalized linear mixed model framework estimated oyster densities while accounting for spatial differences among inshore, nearshore, and offshore reefs; variation in transect length; and temporal variability. We assessed restoration effectiveness via repeated-measures monitoring of fixed restored sites and landscape-scale comparisons of restored versus unrestored reefs. We evaluated covariates of management interest—commercial fishing activity and river discharge—using model comparison and posterior predictions of oyster density at observed covariate values. Results Restoration produced large per-area gains in live-oyster density on offshore reefs. At four fixed restored offshore stations, mean densities rose from near 0 to 91 oysters/m 2 (95% credible interval [CrI] = 43–185) within 6 months and reached 244 oysters/m 2 (95% CrI = 134–433) by year 5 at fixed restoration stations. At the broader landscape scale, restored offshore reefs averaged about 83 oysters/m 2 (95% CrI = 26–157) across sites and postrestoration periods, whereas model-based estimates for restored offshore reefs reached 218 oysters/m 2 (95% CrI = 128–366) in the final sampling period. Conclusions Restoring reef substrate rebuilt the physical capacity for oysters to persist and grow at Lone Cabbage Reef, yielding sustained density gains that degraded sites did not achieve on their own. Harvest status and river discharge showed weak, inconsistent associations once restoration was included, consistent with the interpretation that oyster cultch provides structural capacity, while environmental and fishing conditions modulate around it. Rebuilding and conserving oyster cultch constitute the essential first step to repair and sustain degraded oyster reefs; fishing regulations or favorable environmental conditions alone are unlikely to replace the need for reef structure.

Florida↗

Antipredator response diminishes during periods of resource deficit for a large herbivore

The starvation-predation hypothesis predicts that, during resource shortages, prey forego antipredator behavior and forage as much as possible to avoid starvation, even when risk of predation is high. We tested this hypothesis using GPS locations collected simultaneously from moose (Alces alces) and wolves (Canis lupus) in the Greater Yellowstone Ecosystem of North America. We assessed shifts in the speed, displacement, and habitat selection of moose 24 hours following encounter with wolves (0–1500 m distance). We examined whether the strength of antipredator behaviors would weaken as winter progressed and the nutritional condition of moose declined. Moose responded to wolf encounters by increasing their rate of movement in early winter, but only within 500 m distance. Importantly, these responses attenuated as winter progressed. Moose did not avoid their preferred foraging habitat (riparian areas) following encounters with wolves at any distance, and instead they more strongly selected riparian areas, especially in early winter. Our findings support theoretical predictions that resource deficits should dampen prey antipredator behavior, and suggest that nutritional condition of prey may buffer against run-away risk effects in food webs involving large mammalian predators and prey.

Wyoming↗