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Robert N. Reed

Publications and source records attributed to Robert N. Reed.

At least 19 recordsLinked to original sources
USGS2016

To cross or not to cross: modeling wildlife road crossings as a binary response variable with contextual predictors

Roads are significant barriers to landscape-scale movements of individuals or populations of many wildlife taxa. The decision by an animal near a road to either cross or not cross may be influenced by characteristics of the road, environmental conditions, traits of the individual animal, and other aspects of the context within which the decision is made. We considered such factors in a mixed-effects logistic regression model describing the nightly road crossing probabilities of invasive nocturnal Brown Treesnakes ( Boiga irregularis ) through short-term radiotracking of 691 snakes within close proximity to 50 road segments across the island of Guam. All measures of road magnitude (traffic volume, gap width, surface type, etc.) were significantly negatively correlated with crossing probabilities. Snake body size was the only intrinsic factor associated with crossing rates, with larger snakes crossing roads more frequently. Humidity was the only environmental variable affecting crossing rate. The distance of the snake from the road at the start of nightly movement trials was the most significant predictor of crossings. The presence of snake traps with live mouse lures during a portion of the trials indicated that localized prey cues reduced the probability of a snake crossing the road away from the traps, suggesting that a snake's decision to cross roads is influenced by local foraging opportunities. Per capita road crossing rates of Brown Treesnakes were very low, and comparisons to historical records suggest that crossing rates have declined in the 60+ yr since introduction to Guam. We report a simplified model that will allow managers to predict road crossing rates based on snake, road, and contextual characteristics. Road crossing simulations based on actual snake size distributions demonstrate that populations with size distributions skewed toward larger snakes will result in a higher number of road crossings. Our method of modeling per capita road crossing probabilities as a binary response variable, influenced by contextual factors, may be useful for describing or predicting road crossings by individuals of other taxa provided that appropriate spatial and temporal resolution can be achieved and that potentially influential covariate data can be obtained.

Ecosphere↗
USGS2016

Detection rates of geckos in visual surveys: Turning confounding variables into useful knowledge

Transect surveys without some means of estimating detection probabilities generate population size indices prone to bias because survey conditions differ in time and space. Knowing what causes such bias can help guide the collection of relevant survey covariates, correct the survey data, anticipate situations where bias might be unacceptably large, and elucidate the ecology of target species. We used negative binomial regression to evaluate confounding variables for gecko (primarily Hemidactylus frenatus and Lepidodactylus lugubris) counts on 220-m-long transects surveyed at night, primarily for snakes, on 9,475 occasions. Searchers differed in gecko detection rates by up to a factor of six. The worst and best headlamps differed by a factor of at least two. Strong winds had a negative effect potentially as large as those of searchers or headlamps. More geckos were seen during wet weather conditions, but the effect size was small. Compared with a detection nadir during waxing gibbous (nearly full) moons above the horizon, we saw 28% more geckos during waning crescent moons below the horizon. A sine function suggested that we saw 24% more geckos at the end of the wet season than at the end of the dry season. Fluctuations on a longer timescale also were verified. Disturbingly, corrected data exhibited strong short-term fluctuations that covariates apparently failed to capture. Although some biases can be addressed with measured covariates, others will be difficult to eliminate as a significant source of error in longterm monitoring programs.

Andersen Air Force Base↗
USGS2016

Supersize me: Remains of three white-tailed deer ( Odocoileus virginianus ) in an invasive Burmese python ( Python molurus bivittatus ) in Florida

Snakes have become successful invaders in a wide variety of ecosystems worldwide. In southern Florida, USA, the Burmese python (Python molurus bivittatus) has become established across thousands of square kilometers including all of Everglades National Park (ENP). Both experimental and correlative data have supported a relationship between Burmese python predation and declines or extirpations of mid- to large-sized mammals in ENP. In June 2013 a large python (4.32 m snout-vent length, 48.3 kg) was captured and removed from the park. Subsequent necropsy revealed a massive amount of fecal matter (79 cm in length, 6.5 kg) within the snake’s large intestine. A comparative examination of bone, teeth, and hooves extracted from the fecal contents revealed that this snake consumed three white-tailed deer (Odocoileus virginianus). This is the first report of an invasive Burmese python containing the remains of multiple white-tailed deer in its gut. Because the largest snakes native to southern Florida are not capable of consuming even mid-sized mammals, pythons likely represent a novel predatory threat to white-tailed deer in these habitats. This work highlights the potential impact of this large-bodied invasive snake and supports the need for more work on invasive predator-native prey relationships.

BioInvasions Records↗
USGS2016

Integrating early detection with DNA barcoding: species identification of a non-native monitor lizard (Squamata: Varanidae) carcass in Mississippi, U.S.A.

Early detection of invasive species is critical to increasing the probability of successful management. At the primary stage of an invasion, invasive species are easier to control as the population is likely represented by just a few individuals. Detection of these first few individuals can be challenging, particularly if they are cryptic or otherwise characterized by low detectability. The engagement of members of the public may be critical to early detection as there are far more citizen s on the landscape than trained biologists. However, it can be difficult to assess the credibility of public reporting, especially when a diagnostic digital image or a physical specimen in good condition are lacking. DNA barcoding can be used for verification when morphological identification of a specimen is not possible or uncertain (i.e., degraded or partial specimen). DNA barcoding relies on obtaining a DNA sequence from a relatively small fragment of mitochondrial DNA and comparing it to a database of sequences containing a variety of expertly identified species. He rein we report the successful identification of a degraded specimen of a non-native, potentially invasive reptile species ( Varanus niloticus ) via DNA barcoding, after discovery and reporting by a member of the public.

Mississippi↗
USGS2015

Challenges to a molecular approach to prey identification in the Burmese python, Python molurus bivittatus

Molecular approaches to prey identification are increasingly useful in elucidating predator–prey relationships, and we aimed to investigate the feasibility of these methods to document the species identities of prey consumed by invasive Burmese pythons in Florida. We were particularly interested in the diet of young snakes, because visual identification of prey from this size class has proven difficult. We successfully extracted DNA from the gastrointestinal contents of 43 young pythons, as well as from several control samples, and attempted amplification of DNA mini-barcodes, a 130-bp region of COX1. Using a PNA clamp to exclude python DNA, we found that prey DNA was not present in sufficient quality for amplification of this locus in 86% of our samples. All samples from the GI tracts of young pythons contained only hair, and the six samples we were able to identify to species were hispid cotton rats. This suggests that young Burmese pythons prey predominantly on small mammals and that prey diversity among snakes of this size class is low. We discuss prolonged gastrointestinal transit times and extreme gastric breakdown as possible causes of DNA degradation that limit the success of a molecular approach to prey identification in Burmese pythons

PeerJ↗
USGS2015

Marsh rabbit mortalities tie pythons to the precipitous decline of mammals in the Everglades

To address the ongoing debate over the impact of invasive species on native terrestrial wildlife, we conducted a large-scale experiment to test the hypothesis that invasive Burmese pythons ( Python molurus bivittatus ) were a cause of the precipitous decline of mammals in Everglades National Park (ENP). Evidence linking pythons to mammal declines has been indirect and there are reasons to question whether pythons, or any predator, could have caused the precipitous declines seen across a range of mammalian functional groups. Experimentally manipulating marsh rabbits, we found that pythons accounted for 77% of rabbit mortalities within 11 months of their translocation to ENP and that python predation appeared to preclude the persistence of rabbit populations in ENP. On control sites, outside of the park, no rabbits were killed by pythons and 71% of attributable marsh rabbit mortalities were classified as mammal predations. Burmese pythons pose a serious threat to the faunal communities and ecological functioning of the Greater Everglades Ecosystem, which will probably spread as python populations expand their range.

Florida↗
USGS2015

Environmental DNA (eDNA) sampling improves occurrence and detection estimates of invasive Burmese pythons

Environmental DNA (eDNA) methods are used to detect DNA that is shed into the aquatic environment by cryptic or low density species. Applied in eDNA studies, occupancy models can be used to estimate occurrence and detection probabilities and thereby account for imperfect detection. However, occupancy terminology has been applied inconsistently in eDNA studies, and many have calculated occurrence probabilities while not considering the effects of imperfect detection. Low detection of invasive giant constrictors using visual surveys and traps has hampered the estimation of occupancy and detection estimates needed for population management in southern Florida, USA. Giant constrictor snakes pose a threat to native species and the ecological restoration of the Florida Everglades. To assist with detection, we developed species-specific eDNA assays using quantitative PCR (qPCR) for the Burmese python ( Python molurus bivittatus ), Northern African python ( P . sebae ), boa constrictor ( Boa constrictor ), and the green ( Eunectes murinus ) and yellow anaconda ( E . notaeus ). Burmese pythons, Northern African pythons, and boa constrictors are established and reproducing, while the green and yellow anaconda have the potential to become established. We validated the python and boa constrictor assays using laboratory trials and tested all species in 21 field locations distributed in eight southern Florida regions. Burmese python eDNA was detected in 37 of 63 field sampling events; however, the other species were not detected. Although eDNA was heterogeneously distributed in the environment, occupancy models were able to provide the first estimates of detection probabilities, which were greater than 91%. Burmese python eDNA was detected along the leading northern edge of the known population boundary. The development of informative detection tools and eDNA occupancy models can improve conservation efforts in southern Florida and support more extensive studies of invasive constrictors. Generic sampling design and terminology are proposed to standardize and clarify interpretations of eDNA-based occupancy models.

Florida↗
USGS2015

The influence of disturbed habitat on the spatial ecology of Argentine black and white tegu ( Tupinambis merianae ), a recent invader in the Everglades ecosystem (Florida, USA)

The threat of invasive species is often intensified in disturbed habitat. To optimize control programs, it is necessary to understand how degraded habitat influences the behavior of invasive species. We conducted a radio telemetry study to characterize movement and habitat use of introduced male Argentine black and white tegus ( Tupinambis merianae ) in the Everglades of southern Florida from May to August 2012 at the core and periphery of the introduced range. Tegus at the periphery moved farther per day (mean 131.7 ± 11.6 m, n = 6) compared to tegus at the core (mean 50.3 ± 12.4 m, n = 6). However, activity ranges were not significantly smaller in the core (mean 19.4 ± 8.4 ha, n = 6) compared to periphery (mean 29.1 ± 5.2 ha, n = 6). Peripheral activity ranges were more linear due to activity being largely restricted to levee habitat surrounded by open water or marsh. Tegus were located in shrub or tree habitat (mean 96%) more often than expected based on random locations (mean 58%), and the percent cover of trees and shrubs was higher in activity ranges (mean 61%) than the general study area (17%). Our study highlighted the ability of tegus to spread across the Florida landscape, especially in linear disturbed habitats where increased movement occurred and in areas of altered hydrology where movement is not restricted by water.

Florida↗
USGS2015

Brumation of introduced Black and White Tegus, Tupinambis merianae (Squamata: Teiidae), in southern Florida

An established population of Tupinambis merianae (Black and White Tegu) in southeastern Florida threatens the Everglades ecosystem. Understanding the behavioral ecology of Black and White Tegus could aid in management and control plans. Black and White Tegus are seasonally active and brumate during the winter in their native range, but brumation behavior is largely unstudied in either the native or the invasive range. We describe the first observations of Black and White Tegu brumation in southeastern Florida after monitoring 5 free-ranging, adult male Black and White Tegus through an inactive season using radiotelemetry and automated cameras. Duration of brumation averaged 137 days, beginning in September and ending by February. One of the 5 Black and White Tegus emerged to bask regularly during brumation, which to our knowledge represents the first documented instance of a free-ranging Black and White Tegu basking during brumation. These preliminary findings provide a basis for future research of brumation behavior.

Florida↗
USGS2015

Stability of detectability over 17 years at a single site and other lizard detection comparisons from Guam

To obtain quantitative information about population dynamics from counts of animals, the per capita detectabilities of each species must remain constant over the course of monitoring. We characterized lizard detection constancy for four species over 17 yr from a single site in northern Guam, a relatively benign situation because detection was relatively easy and we were able to hold constant the site, habitat type, species, season, and sampling method. We monitored two species of diurnal terrestrial skinks ( Carlia ailanpalai [Curious Skink], Emoia caeruleocauda [Pacific Bluetailed Skink]) using glueboards placed on the ground in the shade for 3 h on rainless mornings, yielding 10,286 skink captures. We additionally monitored two species of nocturnal arboreal geckos ( Hemidactylus frenatus [Common House Gecko]; Lepidodactylus lugubris [Mourning Gecko]) on the basis of 15,212 sightings. We compared these count samples to a series of complete censuses we conducted from four or more total removal plots (everything removed to mineral soil) totaling 400 m 2 (about 1% of study site) in each of the years 1995, 1999, and 2012, providing time-stamped quantification of detectability for each species. Unfortunately, the actual population trajectories taken by the four species were masked by unexplained variation in detectability. This observation of debilitating latent variability in lizard detectability under nearly ideal conditions undercuts our trust in population estimation techniques that fail to quantify venue-specific detectability, rely on pooled detection probability estimates, or assume that modulation in predefined environmental covariates suffices for estimating detectability.

Journal of Herpetology↗
USGS2015

Invasive Species Science Branch: research and management tools for controlling invasive species

Invasive, nonnative species of plants, animals, and disease organisms adversely affect the ecosystems they enter. Like “biological wildfires,” they can quickly spread and affect nearly all terrestrial and aquatic ecosystems. Invasive species have become one of the greatest environmental challenges of the 21st century in economic, environmental, and human health costs, with an estimated effect in the United States of more than $120 billion per year. Managers of the Department of the Interior and other public and private lands often rank invasive species as their top resource management problem. The Invasive Species Science Branch of the Fort Collins Science Center provides research and technical assistance relating to management concerns for invasive species, including understanding how these species are introduced, identifying areas vulnerable to invasion, forecasting invasions, and developing control methods. To disseminate this information, branch scientists are developing platforms to share invasive species information with DOI cooperators, other agency partners, and the public. From these and other data, branch scientists are constructing models to understand and predict invasive species distributions for more effective management. The branch also has extensive herpetological and population biology expertise that is applied to harmful reptile invaders such as the Brown Treesnake on Guam and Burmese Python in Florida.

Fact Sheet↗
USGS2015

Geographic distribution: Boiga irregularis (Brown treesnake)

Rota: Rota Seaport (14.136502°N, 145.135351°E; WGS84). 3 September 2014. Shelwyn Taisacan, Robert Ulloa. Verified by G. Zug. USNM 581745. Snake (42 g, 810 mm SVL, 1020 mm total length) captured in a mouse-baited trap hung on the fence perimeter of the Rota Seaport. Because the Northern Marianas Islands are historically snake-free, these traps are used around ports and airports for early detection of snakes that may stow away in vessels or aircraft from Guam (60 km to the south), possibly evading quarantine detections. Necropsy revealed no prey items in stomach or gas- trointestinal tract. Dissection at USNM confirmed the snake was female. To our knowledge, this is the first incursion of a live Boiga irregularis on Rota. Brown Treesnakes previously observed on the island (N = 3) arrived in cargo already dead. The USGS Brown Treesnake Rapid Response Team mobilized 4 September–20 Oc- tober 2014 to search the focal and surrounding areas for evidence of a possible incipient population; no additional snakes were found during this search effort.

Herpetological Review↗
USGS2015

An assessment of the impact of the pet trade on five CITES-Appendix II case studies - Boa constrictor imperator

Boa constrictor is a wide ranging snake species that is common in the pet trade and is currently listed in CITES Appendix II. Hog Island boas, or Cayos Cochinos boas, are a dwarf, insular race of Boa constrictor imperator endemic to the Cayos Cochinos Archipelago, Honduras. Cayos Cochinos boas are prized in the international pet trade for their light pink dorsal coloration, as well as for being much smaller and more docile than mainland boas (Porras, 1999; Russo, 2007). The boa population in the Cayos Cochinos was heavily exploited for the pet trade from 1979 to 1993, and researchers reported finding no boas on the islands during a five day herpetological survey trip in the early 1990s (Wilson and CruzDiaz, 1993), leading to the speculation that the population had been extirpated (e.g., Russo, 2007). The Cayos Cochinos Archipelago Natural Marine Monument has been managed by the Honduran Coral Reef Foundation since 1994 and prohibits removal of boas from the area. Poaching for the pet trade continues today, although at a lower level. Due to the endemic nature of this island morph of B. c. imperator it is imperative that we understand the dynamics of the populations and the ongoing threats that could negatively impact their long-term survival.

Cayos Cochinos Archipelago (Hog Islands), Islas de↗
USGS2015

Factors affecting defensive strike behavior in Brown Treesnakes ( Boiga irregularis ) provoked by humans

Striking is a typical antipredator defense exhibited by many species of snakes. While trapping Brown Treesnakes (Boiga irregularis) on Guam, we observed that snakes most frequently struck at an approaching person at a site where snakes had been trapped, marked, and handled in the past. Using a combination of between-sites and within-site comparisons, we assessed if the propensity to strike was correlated with capture histories (both recent and long-term), snake size, body condition (a proxy to nutritional stress), sex, or tail condition (broken or intact), while controlling for confounding variables. We confirmed that propensity to strike was higher at the site where we had been conducting capture-mark-recapture for several years. However, we were unable to demonstrate a correlation between striking tendencies and individual recent or long-term capture histories. The only morphological covariate that had an effect on strike propensity was sex, with females striking more often than males. After removing the site effect from our model, we found that snakes missing parts of their tails were more likely to strike than snakes with intact tails. We have yet to identify the factor(s) that cause the pronounced difference across sites in snake propensity to strike, and data from additional sites might help elucidate any geographical patterns.

Herpetological Conservation and Biology↗
USGS2014

Assessing risks to humans from invasive Burmese pythons in Everglades National Park, Florida, USA

Invasive Burmese pythons (Python molurus bivittatus) are now established across a large area of southern Florida, USA, including all of Everglades National Park (NP). The presence of these large-bodied snakes in the continental United States has attracted intense media attention, including regular reference to the possibility of these snakes preying on humans. Over the course of a decade (2003–2012), we solicited reports of apparently unprovoked strikes directed at humans in Everglades NP. We summarize the circumstances surrounding each of the 5 reported incidents, which occurred between 2006 and 2012. All strikes were directed toward biologists moving through flooded wetlands; 2 strikes resulted in minor injury and none resulted in constriction. We consider most of these strikes to be cases of “mistaken identity,” in which the python initiated a strike at a potential prey item but aborted its predatory behavior prior to constriction and ingestion. No strikes are known to have been directed at park visitors despite visitation rates averaging over one million per year during this period. We conclude that while risks to humans should not be completely discounted, the relative risk of a human being killed by a python in Everglades NP appears to be extremely low.

Florida↗
USGS2014

Invasive and introduced reptiles and amphibians

Why is there a section on introduced amphibians and reptiles in this volume, and why should veterinarians care about this issue? Globally, invasive species are a major threat to the stability of native ecosystems, 1,2 and amphibians and reptiles are attracting increased attention as potential invaders. Some introduced amphibians and reptiles have had a major impact (e.g., Brown Tree Snakes [ Boiga irregularis ] wiping out the native birds of Guam 3 or Cane Toads [ Rhinella marina ] poisoning native Australian predators). 4 For the vast majority of species, however, the ecological, economic, and sociopolitical effects of introduced amphibians and reptiles are generally poorly quantified, largely because of a lack of focused research effort rather than because such effects are nonexistent. This trend is alarming given that rates of introduction have increased exponentially in recent decades.

Book chapter↗
USGS2014

Movements and activity of juvenile Brown Treesnakes ( Boiga irregularis )

Understanding the spatial ecology and foraging strategy of invasive animals is essential for success in control or eradication. We studied movements and activity in juvenile Brown Treesnakes on Guam, as this population segment has proven particularly difficult to control. Distance between daytime refugia (from telemetry of 18 juveniles, 423-800 mm snout-vent length) ranged from 0-118 m ( n = 86), with a grand mean of 43 m. There were tendencies for shorter snake movements on nights directly following a full moon and on dry nights, but variation among snakes was of a larger magnitude and would greatly reduce chances to detect moon or rain effects unless corrected for. Snake activity was estimated from audio recordings of signals from “tipping” radio transmitters, analyzed for pulse period and amplitude. Activity was highest in the hours immediately after sunset, and gradually declined throughout the night before dropping abruptly in conjunction with sunrise. Snake activity was higher on rainy nights, and tended to be highest during waning moons and when the moon was below the horizon. We conclude that small Brown Treesnakes forage actively and appear to move far enough to regularly encounter the traps and bait used on Guam for control purposes, suggesting that alternative explanations are required for their low capture rates with these control tools.

Copeia↗