Geology topics

Peter B. Moyle

Publications and source records attributed to Peter B. Moyle.

16 recordsLinked to original sources

USGS2024

Age, growth, and trophic ecology of the Redeye Bass, an introduced invader of California rivers

Objective The Redeye Bass Micropterus coosae is a piscivore introduced into California, which has become a threat to the state's endemic freshwater fishes. It has eliminated native fishes from the middle reaches of the Cosumnes River, our study stream, which is the largest stream without a major dam on its main stem in the Sacramento–San Joaquin River drainage, central California, USA. We thoroughly documented its novel life history and ecology in California to shed light on why it has been such a successful invader despite its relatively small native range. Methods Over 4000 stable carbon and nitrogen isotope samples were utilized to refine our understanding of fish trophic position within the river food web, along with a stable isotope mixing model that accounts for uncertainty in trophic enrichment data. Result Growth was slow, with an adult size range of 9–25 cm standard length (SL), although few were larger than 15-cm SL (5–6 years old). Stable isotope analyses showed that Redeye Bass dominate the river ecosystem to the exclusion of most native fishes, occupying multiple trophic levels and microhabitats. Adults largely consumed non-native crayfish and large aquatic insects, while juveniles consumed aquatic insects, the size of prey increasing with Redeye Bass length. There was no evidence of cannibalism. Redeye Bass have effectively occupied the diverse trophic positions of at least four native fish species and have altered the trophic position of Rainbow Trout Oncorhynchus mykiss in sites where they co-occur with bass. Conclusion The introduction of Redeye Bass poses a continuing threat to native stream fishes in California and elsewhere.

Transactions of the American Fisheries Society↗

USGS2023

Vulnerability to climate change of managed stocks in the California Current large marine ecosystem

Introduction: Understanding how abundance, productivity and distribution of individual species may respond to climate change is a critical first step towards anticipating alterations in marine ecosystem structure and function, as well as developing strategies to adapt to the full range of potential changes. Methods: This study applies the NOAA (National Oceanic and Atmospheric Administration) Fisheries Climate Vulnerability Assessment method to 64 federally-managed species in the California Current Large Marine Ecosystem to assess their vulnerability to climate change, where vulnerability is a function of a species’ exposure to environmental change and its biological sensitivity to a set of environmental conditions, which includes components of its resiliency and adaptive capacity to respond to these new conditions. Results: Overall, two-thirds of the species were judged to have Moderate or greater vulnerability to climate change, and only one species was anticipated to have a positive response. Species classified as Highly or Very Highly vulnerable share one or more characteristics including: 1) having complex life histories that utilize a wide range of freshwater and marine habitats; 2) having habitat specialization, particularly for areas that are likely to experience increased hypoxia; 3) having long lifespans and low population growth rates; and/or 4) being of high commercial value combined with impacts from non-climate stressors such as anthropogenic habitat degradation. Species with Low or Moderate vulnerability are either habitat generalists, occupy deep-water habitats or are highly mobile and likely to shift their ranges. Discussion: As climate-related changes intensify, this work provides key information for both scientists and managers as they address the long-term sustainability of fisheries in the region. This information can inform near-term advice for prioritizing species-level data collection and research on climate impacts, help managers to determine when and where a precautionary approach might be warranted, in harvest or other management decisions, and help identify habitats or life history stages that might be especially effective to protect or restore.

California, Oregon, Washington↗

USGS2020

Food web fuel differs across habitats and seasons of a tidal freshwater estuary

Estuarine food webs are fueled by multiple different primary producers. However, identifying the relative importance of each producer to consumers is difficult, particularly for fishes that utilize multiple food sources due to both their mobility and their generally high trophic levels. Previous studies have documented broad spatial differences in the importance of primary producers to fishes within the Upper San Francisco Estuary, California, including separation between pelagic and littoral food webs. In this study, we evaluated the importance of primary producers to adult fishes in three closely spaced subregions that represented disparate habitat types (a tidal wetland channel, a turbid backwater channel, and a deep open-water channel), each a potential outcome of local restoration projects. Using stable isotope analysis coupled with a Bayesian mixing model, we identified significant differences in primary-producer contribution to fishes and invertebrates across habitats and seasons, especially in the relative contribution of submersed aquatic vegetation and phytoplankton. Most fishes utilized multiple primary producers and showed little segregation between pelagic and littoral food webs among habitats. Availability of primary producers differs seasonally and across multiple spatial scales, helping to buffer environmental variability and thus enhancing food web resilience. Ecosystem restoration may improve with emphasis on restoring a wide variety of primary producers to support consumers.

California↗

USGS2019

Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem

Major ecological realignments are already occurring in response to climate change. To be successful, conservation strategies now need to account for geographical patterns in traits sensitive to climate change, as well as climate threats to species-level diversity. As part of an effort to provide such information, we conducted a climate vulnerability assessment that included all Pacific salmon and steelhead (Oncorhynchus spp.) listed under the U.S. Endangered Species Act. Using an expert-based scoring system, we ranked 20 attributes for the 28 listed units, and 5 additional units. Attributes captured biological sensitivity, or the strength of linkages between each listing unit and the present climate; climate exposure, or the magnitude of projected change in local environmental conditions; and adaptive capacity, or the ability to modify phenotypes to cope with new climatic conditions. Each listing unit was then assigned one of four vulnerability categories.

California↗

USGS2019

Using the Distinct Population Segment concept to protect fishes with low levels of genomic differentiation: conservation of an endemic minnow (Hitch, Lavinia exilicauda)

In the United States, the Endangered Species Act (ESA) of 1973 was enacted to conserve species which are endangered or threatened throughout all or a portion of their range. The definition of ‘species’ includes subspecies and distinct population segments (DPSs). In freshwater fishes, use of DPS designations has largely been restricted to salmonid fishes (Salmonidae), although the DPS concept is increasingly applied to other fishes as well. As more taxa approach threatened status, the difficult question becomes what to do when genetic evidence does not strongly support formal taxonomic designations (full species or subspecies). We examine the potential use of the DPS concept to protect fishes using the example of Hitch ( Lavinia exilicauda ), a cyprinid fish endemic to California. The Hitch is divided up into three formally described, geographically separated subspecies. However, genomic studies (RADseq), presented here with three independent analyses using a large data set, only weakly support subspecies designations. Results suggest population but not subspecies structure. Nevertheless, conventional taxonomic methods, strong contemporary isolation, the importance of protecting genetic diversity, and high cultural values still qualify all three designated subspecies for DPS status and demonstrate how taxa such as Clear Lake Hitch can warrant protection under the ESA.

Transactions of the American Fisheries Society↗

USGS2016

Delta smelt: Life history and decline of a once abundant species in the San Francisco Estuary

This paper reviews what has been learned about Delta Smelt and its status since the publication of The State of Bay-Delta Science, 2008 (Healey et al. 2008). The Delta Smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain the population. As a listed species living in the central node of California’s water supply system, Delta Smelt has been the focus of a large research effort to understand causes of decline and identify ways to recover the species. Since 2008, a remarkable record of innovative research on Delta Smelt has been achieved, which is summarized here. Unfortunately, research has not prevented the smelt’s continued decline, which is the result of multiple, interacting factors. A major driver of decline is change to the Delta ecosystem from water exports, resulting in reduced outflows and high levels of entrainment in the large pumps of the South Delta. Invasions of alien species, encouraged by environmental change, have also played a contributing role in the decline. Severe drought effects have pushed Delta Smelt to record low levels in 2014–2015. The rapid decline of the species and failure of recovery efforts demonstrate an inability to manage the Delta for the “co-equal goals” of maintaining a healthy ecosystem and providing a reliable water supply for Californians. Diverse and substantial management actions are needed to preserve Delta Smelt.

California↗

USGS2015

Adapting California’s ecosystems to a changing climate

Significant efforts are underway to translate improved understanding of how climate change is altering ecosystems into practical actions for sustaining ecosystem functions and benefits. We explore this transition in California, where adaptation and mitigation are advancing relatively rapidly, through four case studies that span large spatial domains and encompass diverse ecological systems, institutions, ownerships, and policies. The case studies demonstrate the context specificity of societal efforts to adapt ecosystems to climate change and involve applications of diverse scientific tools (e.g., scenario analyses, downscaled climate projections, ecological and connectivity models) tailored to specific planning and management situations (alternative energy siting, wetland management, rangeland management, open space planning). They illustrate how existing institutional and policy frameworks provide numerous opportunities to advance adaptation related to ecosystems and suggest that progress is likely to be greatest when scientific knowledge is integrated into collective planning and when supportive policies and financing enable action.

BioScience↗

USGS2009

Status and conservation of lampreys in California

Abstract .—Lampreys are among the least studied group of fishes in California. At least seven species inhabit freshwater habitats within the state, including the Kern brook lamprey Lampetra hubbsi , a California endemic. Four species are micropredators on fish, Pacific lamprey Entosphenus tridentatus (formerly L. tridentata ), river lamprey L. ayresii , Klamath lamprey E. similis (formerly L. similis ) and Goose Lake lamprey Entosphenus sp. The remaining three species are nonfeeding as adults and are presumed to have many populations isolated from one another. Pacific lamprey and river lamprey are anadromous and may have increased diversity through multiple runs. A systematic analysis of the limited information available indicates that, with the possible exception of the Pit-Klamath brook lamprey E. lethophagus (formerly L. lethophaga ), all species are either declining, in low numbers, or in isolated populations. Causes of the declines are multiple and species-specific, but in general, alteration of watersheds by humans, resulting in increased siltation, temperatures and pollution, as well as other habitat changes are the principal causes. Protecting lampreys has the benefit of protecting stream ecosystems throughout the state because of the wide historic presence of lampreys and because ammocoetes require clean, cool water and relatively complex habitat, including stable backwaters.

California↗

USGS2008

Projecting cumulative benefits of multiple river restoration projects: an example from the Sacramento-San Joaquin River system in California

Despite increasingly large investments, the potential ecological effects of river restoration programs are still small compared to the degree of human alterations to physical and ecological function. Thus, it is rarely possible to “restore” pre-disturbance conditions; rather restoration programs (even large, well-funded ones) will nearly always involve multiple small projects, each of which can make some modest change to selected ecosystem processes and habitats. At present, such projects are typically selected based on their attributes as individual projects (e.g., consistency with programmatic goals of the funders, scientific soundness, and acceptance by local communities), and ease of implementation. Projects are rarely prioritized (at least explicitly) based on how they will cumulatively affect ecosystem function over coming decades. Such projections require an understanding of the form of the restoration response curve, or at least that we assume some plausible relations and estimate cumulative effects based thereon. Drawing on our experience with the CALFED Bay-Delta Ecosystem Restoration Program in California, we consider potential cumulative system-wide benefits of a restoration activity extensively implemented in the region: isolating/filling abandoned floodplain gravel pits captured by rivers to reduce predation of outmigrating juvenile salmon by exotic warmwater species inhabiting the pits. We present a simple spreadsheet model to show how different assumptions about gravel pit bathymetry and predator behavior would affect the cumulative benefits of multiple pit-filling and isolation projects, and how these insights could help managers prioritize which pits to fill.

California↗

USGS2008

Changes in fish diets and food web mercury bioaccumulation induced by an invasive planktivorous fish

The invasion, boom, collapse, and reestablishment of a population of the planktivorous threadfin shad in Clear Lake, California, USA, were documented over a 20-year period, as were the effects of changing shad populations on diet and mercury (Hg) bioaccumulation in nearshore fishes. Threadfin shad competitively displaced other planktivorous fish in the lake, such as inland silversides, young-of-year (YOY) largemouth bass, and YOY bluegill, by reducing zooplankton abundance. As a result, all three species shifted from a diet that was dominated by zooplankton to one that was almost entirely zoobenthos. Stable carbon isotopes corroborated this pattern with each species becoming enriched in δ 13 C, which is elevated in benthic vs. pelagic organisms. Concomitant with these changes, Hg concentrations increased by ∼50% in all three species. In contrast, obligate benthivores such as prickly sculpin showed no relationship between diet or δ 13 C and the presence of threadfin shad, suggesting that effects of the shad were not strongly linked to the benthic fish community. There were also no changes in Hg concentrations of prickly sculpin. The temporary extirpation of threadfin shad from the lake resulted in zooplankton densities, foraging patterns, isotope ratios, and Hg concentrations in pelagic fishes returning to pre-shad values. These results indicate that even transient perturbations of the structure of freshwater food webs can result in significant alterations in the bioaccumulation of Hg and that food webs in lakes can be highly resilient.

Ecological Applications↗

USGS2005

Native fishes of the Sacramento-San Joaquin drainage, California: A history of decline

In this paper, we review information regarding the status of the native fishes of the combined Sacramento River and San Joaquin River drainages (hereinafter the "Sacramento-San Joaquin drainage") and the factors associated with their declines. The Sacramento-San Joaquin drainage is the center of fish evolution in California, giving rise to 17 endemic species of a total native fish fauna of 28 species. Rapid changes in land use and water use beginning with the Gold Rush in the 1850s and continuing to the present have resulted in the extinction, extirpation, and reduction in range and abundance of the native fishes. Multiple factors are associated with the declines of native fishes, including habitat alteration and loss, water storage and diversion, flow alteration, water quality, and invasions of alien species. Although native fishes can be quite tolerant of stressful physical conditions, in some rivers of the drainage the physical habitat has been altered to the extent that it is now more suited for alien species. This interaction of environmental changes and invasions of alien species makes it difficult to predict the benefits of restoration efforts to native fishes. Possible effects of climate change on California's aquatic habitats add additional complexity to restoration of native fishes. Unless protection and restoration of native fishes is explicitly considered in future water management decisions, declines are likely to continue.

California↗

USGS1995

Comparative ecology of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River, California

We documented species' distributions, size structure of populations, abundance in mainstem and tributary streams, habitat use, and diets of prickly sculpin, Cottus asper , and coastrange sculpin, C. aleuticus , in the Eel River drainage of California, to determine the processes allowing coexistence of these very similar fishes. We observed prickly sculpins at 43 sites and coastrange sculpins at 34. The species co-occurred at 26 sites. Young-of-year coastrange sculpins were only observed within 42 km of the ocean, but young-of-year prickly sculpins were present throughout the species range. Mean, maximum, and minimum lengths of coastrange sculpins were positively correlated with distance from the ocean but no significant relationships were found for prickly sculpins. Absolute abundance of both species was highest in mainstem habitat (prickly sculpins = 0.6 sculpins m −2 and coastrange sculpins = 0.4 sculpins m −2 ) . Tributary densities of both species tended to be less than 0.1 sculpins m −2 . The species inhabited very similar habitats and had very similar diets. Coastrange sculpin populations in upstream areas were maintained by immigration from downstream areas in contrast with prickly sculpin populations that produced young-of-year fish throughout their range. Densities were probably not high enough for interspecific interactions to be important. The factors limiting the upstream distribution of the species may include high water temperatures, stability of the stream bed, and behavior of the fish. In the past, the range of sculpins within the Eel River drainage probably fluctuated with changing physical conditions. Recent introductions of exotic species that compete with and prey upon sculpins, and ongoing human activities in the drainage could result in major reductions in the distribution and abundance of one or both species.

California↗

USGS1994

Historical decline and current status of coho salmon in California

The southernmost populations of coho salmon Oncorhynchus kisutch occur in California where native coho stocks have declined or disappeared from all streams in which they were historically recorded. Coho salmon previously occurred in as many as 582 streams, from the Smith River near the Oregon border to the San Lorenzo River on the central coast. Information on the recent presence or absence of coho salmon was available for only 248 (43%) of those streams. Of these 248 streams, 54% still contained coho salmon and 46% did not. The farther south a stream is located, the more likely it is to have lost its coho salmon population. We estimate that the total number of adult coho salmon entering California streams in 1987-1991 averaged around 31,000 fish per year, with hatchery populations making up 57% of this total. Thus, about 13,000 nonhatchery coho salmon have been spawning in California streams each year since 1987, an estimate that includes naturalized stocks containing about 9,000 fish of recent hatchery ancestry. There are now probably less than 5,000 native coho salmon (with no known hatchery ancestry) spawning in California each year, many of them in populations of less than 100 individuals. Coho populations today are probably less than 6% of what they were in the 1940s, and there has been at least a 70% decline since the 1960s. There is every reason to believe that California coho populations, including hatchery stocks, will continue to decline. The reasons for the decline of coho salmon in California include: stream alterations brought about by poor land-use practices (especially those related to logging and urbanization) and by the effects of periodic floods and drought, the breakdown of genetic integrity of native stocks, introduced diseases, overharvest, and climatic change. We believe, that ,coho salmon in California qualify for listing as a threatened species under state law, and certain populations may qualify for listing as threatened or endangered under federal law.

California↗

USGS1992

Implications of morphological variation among populations of California roach Lavinia symmetricus (Cyprinidae) for conservation policy

The California roach Lavinia symmetricus is a small cyprinid native to Central California. Populations of roach are presently isolated from one another due to degradation of stream habitats between them. We examined eight populations, each from a tributary system of the San Joaquin River, to determine if morphological differences existed among them. These tributaries are now isolated from one another by dams or areas of unsuitable habitat. We found significant differences among drainages for all of the characters studied. Discriminant analysis classified 70% of the individuals to the correct drainage. The differences were not clinal because adjacent drainages were not grouped together in discriminant space. The most distinct population was as different from a nearby population (36 stream km) as from populations from other more distant tributaries and could possibly merit subspecies status. These results suggest that each population has been isolated long enough to develop morphological adaptions to local environment conditions. With one exception, the differences among the populations were too small for formal taxonomic recognition but suggest that management should focus on preserving local populations throughout the species' range, rather than scattered populations in a few reserves. This policy would serve to protect the genetic diversity of California roach, local aquatic habitats, and other even more poorly known species.

California↗

USGS1991

Seasonal changes in microhabitat selection by rainbow trout in a small stream

Shifts in microhabitat selection by rainbow trout Oncorhynchus mykiss were related to seasonal and ontogenetic factors in a small stream characterized by short riffles, small pools, and boulder substrate. Resource availability did not differ significantly between summer and November sampling dates for most variables related to water velocity, substrate, and cover, although depths were greater and temperatures were significantly lower in November. Ontogenetic shifts were found for total depth, focal elevation, mean water column velocity, focal velocity, surface velocity, and substrate, but not for relative depth or temperature. When microhabitat selection was adjusted for fish size, selection was significantly different between seasons, most notably for velocity. Ontogenetic shifts in microhabitat use by young-of-year rainbow trout were interrupted by cooling winter temperatures. These changes resulted in substantially different microhabitat requirements for all rainbow trout size-classes in different seasons.

Transactions of the American Fisheries Society↗

USGS1989

Spatial, seasonal and diel distribution of fishes in a California reservoir dominated by native fishes

During 21 months of sampling with various techniques, we captured 24 species of fish in Britton Reservoir. Nine species comprised over 96% of the number of fish captured and approximately 88% of the biomass. Five native non-game species accounted for over 77% of the catches. The native non-game fishes have maintained large populations in the reservoir despite continued introductions of non-native species. Two sources of non-native species exist. The first is the introduction of exotic species directly into the reservoir during fish-stocking programs. The second is the continuous movement of non-native fishes into the reservoir from large populations which reside in a major tributary of the reservoir. Factors responsible for the large number of native fishes are: management of the reservoir for hydroelectric generation; temperature regime; reservoir morphology. The fish community structure is stratified along two axes: upper basin/lower basin and inshore/offshore. Most of the 24 species were found inshore: 14 species were found offshore. Four of the native non-game fishes were most abundant in the upper basin: three introduced non-native fishes were most abundant in the lower basin of the reservoir. The offshore community was dynamic on a daily and seasonal basis.

California↗