Geology topics

Nicholas S. Johnson

Publications and source records attributed to Nicholas S. Johnson.

At least 37 records · Page 2Linked to original sources

USGS2021

Gut microbiota associated with different sea lamprey (Petromyzon marinus) life stages

Sea lamprey (SL; Petromyzon marinus ), one of the oldest living vertebrates, have a complex metamorphic life cycle. Following hatching, SL transition into a microphagous, sediment burrowing larval stage, and after 2–10+ years, the larvae undergo a dramatic metamorphosis, transforming into parasitic juveniles that feed on blood and bodily fluids of fishes; adult lamprey cease feeding, spawn, and die. Since gut microbiota are critical for the overall health of all animals, we examined the microbiota associated with SLs in each life history stage. We show that there were significant differences in the gut bacterial communities associated with the larval, parasitic juvenile, and adult life stages. The transition from larval to the parasitic juvenile stage was marked with a significant shift in bacterial community structure and reduction in alpha diversity. The most abundant SL-associated phyla were Proteobacteria, Fusobacteria, Bacteroidetes, Verrucomicrobia, Actinobacteria, and Firmicutes, with their relative abundances varying among the stages. Moreover, while larval SL were enriched with unclassified Fusobacteriaceae, unclassified Verrucomicrobiales and Cetobacterium, members of the genera with fastidious nutritional requirements, such as Streptococcus , Haemophilus , Cutibacterium , Veillonella , and Massilia , were three to four orders of magnitude greater in juveniles than in larvae. In contrast, adult SLs were enriched with Aeromonas , Iodobacter , Shewanella , and Flavobacterium . Collectively, our findings show that bacterial communities in the SL gut are dramatically different among its life stages. Understanding how these communities change over time within and among SL life stages may shed more light on the role that these gut microbes play in host growth and fitness.

Michigan, Ontario↗

USGS2021

Exploiting common senses: Sensory ecology meets wildlife conservation and management

Multidisciplinary approaches to conservation and wildlife management are often effective in addressing complex, multi-factor problems. Emerging fields such as conservation physiology and conservation behaviour can provide innovative solutions and management strategies for target species and systems. Sensory ecology combines the study of ‘how animals acquire’ and process sensory stimuli from their environments, and the ecological and evolutionary significance of ‘how animals respond’ to this information. We review the benefits that sensory ecology can bring to wildlife conservation and management by discussing case studies across major taxa and sensory modalities. Conservation practices informed by a sensory ecology approach include the amelioration of sensory traps, control of invasive species, reduction of human–wildlife conflicts and relocation and establishment of new populations of endangered species. We illustrate that sensory ecology can facilitate the understanding of mechanistic ecological and physiological explanations underlying particular conservation issues and also can help develop innovative solutions to ameliorate conservation problems.

Conservation Physiology↗

USGS2021

Assessment of sea lamprey (Petromyzon marinus) diet using DNA metabarcoding of feces

Sea lamprey ( Petromyzon marinus ) are invasive in the Laurentian Great Lakes, parasitize large-bodied fishes, and therefore are the focus of an international control program. However, damage caused by sea lamprey to modern day fish stocks remains uncertain because diet analysis of juvenile sea lamprey has been challenging; they feed on blood and are difficult to randomly sample in the lakes. Here, both challenges were addressed by showing that DNA metabarcoding of fecal material can be used to identify the diet of actively feeding juvenile sea lamprey, and can also be used to determine what non-feeding adult sea lamprey captured in streams fed on while parasitizing fish. Fecal samples from juvenile sea lamprey that were feeding on lake trout in northern Lake Huron overwhelmingly contained lake trout ( Salvelinus namaycush ) DNA (90%), while smaller percentages contained lake whitefish ( Coregonus clupeaformis ; 5%) and longnose sucker ( Catostomus catostomus ; 5%) DNA. Fecal samples from adult sea lamprey captured from a tributary to northern Lake Huron overwhelmingly contained longnose and white sucker DNA ( Catostomus spp.; 80%), while a smaller percentage contained lake trout DNA (10%). Diet composition of adult sea lamprey sampled in the tributary (Black Mallard Creek) was more diverse than juvenile diet composition. DNA metabarcoding suggests that Catostomus spp. may be an important host fish in northern Lake Huron for sea lamprey prior to spawning. Future research could investigate how diet varies across years and lakes and the prevalence and sources of DNA contamination. Application of DNA metabarcoding for diet assessment may be practical for identifying populations of invasive sea lamprey that feed on highly valued fishes and help guide restoration of lampreys worldwide.

Michigan↗

USGS2021

Estimating age and growth of invasive sea lamprey: A review of approaches and investigation of a new method

We review recent advances in age and growth estimation of invasive sea lamprey ( Petromyzon marinus ) in the Great Lakes and present a more accurate method for growth estimation. To forecast growth and prioritize streams for control actions, sea lamprey managers currently use an average daily growth model. Here, a new linear model that included stream and lake as contributing variables was investigated and found to outperform the currently used growth model (roughly a 10 mm difference at age 1). Length-at-age of larvae between ages 1 and 4 were also best forecasted by a linear model with the predictor variables including growing degree days, stream, lake, and larval lamprey density. The model predicts that larval sea lamprey grow faster in warm streams with low densities of lamprey larvae. More accurate growth models could allow sea lamprey control managers to improve decisions concerning how sea lamprey control effort is allocated among streams, and could help inform broader modeling efforts evaluating the population demographics of a lake-wide populations exposed to varying control and environmental scenarios. Priority areas for research include investigating if temperatures have increased in sea lamprey-producing streams in response to climate change, using close-kin mark-recapture to mark family groups at age 1 to age large larvae and transformers years later, and determining if sex determination is environmentally mediated by larval growth and density.

Great Lakes↗

USGS2021

Where you trap matters: Implications for integrated sea lamprey management

Barriers and pesticides have been used in streams to control sea lamprey in the Laurentian Great Lakes for nearly 70 years. Considerable effort has been spent to develop additional control measures, but much less effort has gone toward identifying how or where additional control measures might be cost-effectively integrated into the sea lamprey control program. We use a management strategy evaluation model in Lake Michigan to identify the stream types that would be most suitable for deploying traps to remove adults prior to spawning and estimate the likely impact on adult sea lamprey abundance in subsequent years under several trapping scenarios relative to status quo abundance. The greatest reduction in lake-wide adult sea lamprey abundance predicted by the model resulted when removing adult sea lampreys from streams that are difficult for control program personnel to treat with lampricide because lampricide applications would be required less frequently. Additionally, targeting streams which experience regular sea lamprey recruitment and streams with low adult sea lamprey density should result in reduced lake-wide abundance if trapping costs are relatively low or removal is high. Our results provide direction on where to trap and why, and indicate that trapping may be a valuable part of an integrated sea lamprey control approach advancing the goals of the Great Lakes Fishery Commission.

Journal of Great Lakes Research↗

USGS2021

Registration and application of sea lamprey pheromones for sea lamprey control in the United States and Canada

Since the identification of 3-trifluoromethyl-4-nitrophenol as a lampricide in the 1950s, control of sea lamprey populations in the Great Lakes has largely relied on lampricides, barriers, and traps. Lampricide treatments target larval lampreys in tributaries of the Great Lakes. The Great Lakes Fishery Commission oversees sea lamprey control efforts and has invested in technologies that may target other life stages to provide a more integrated approach to sea lamprey control. One technology under development is the use of pheromones to alter behavior of spawning adults. Pheromones are considered biopesticides , which are substances made from naturally occurring products, or derived from living organisms, or a microorganism, that controls pests. We provide a review of sea lamprey management that led to the development of pheromone registration. We also describe the process used to register the first vertebrate pheromone, 3-ketopetromyzonal-24-sulfate (3kPZS) in the United States and Canada and its potential uses in sea lamprey control as a supplemental tool to chemical lampricides.

Journal of Great Lakes Research↗

USGS2021

Winter severity, fish community, and availability to traps explain most of the variability in estimates of adult sea lamprey in Lake Superior

Animal populations are assessed to estimate rates of artificial and natural mortality at ecologically relevant spatial and temporal scales to develop exploitation quotas. But how the population’s natural mortality rate and how the ability to observe the population changes through time are poorly understood in most invasive fishes, despite efforts to control their populations. By investigating a 30-year abundance index of invasive sea lamprey ( Petromyzon marinus ) in Lake Superior, we found that the index was highly correlated (R 2 = 0.75) with biotic and abiotic factors hypothesized to influence sea lamprey natural mortality and their availability to index traps. The index was lowest in years (1) following winters with below average ice cover on Lake Superior, (2) when stream discharge during sea lamprey migration was below average, (3) when adult sea lamprey were smaller than average, and (4) when adult sea lamprey were more likely to be distributed in tributaries on the east side of Lake Superior. These results highlight the need for policy makers to consider invasive species abundance indexes not just in the context of control effort, but also in the context of biotic and abiotic conditions because they could markedly influence natural mortality or the ability to observe highly suppressed populations.

Lake Superior↗

USGS2021

A case study of sea lamprey (Petromyzon marinus) control and ecology in a microcosm of the Great Lakes

The Cheboygan River, Michigan, is the only tributary to the upper Great Lakes where sea lamprey ( Petromyzon marinus ) are known to complete their entire life cycle. The Upper and Lower reaches are separated by the Cheboygan Lock and Dam located about 2 km from Lake Huron. In the Upper River, the Pigeon, Sturgeon, and Maple Rivers provide nursery habitat for larval sea lamprey. Burt and Mullett Lakes provide feeding grounds for juvenile sea lamprey. Low levels of immigration from Lake Huron occur when adult sea lamprey bypass the lock and dam. Lampricide treatment in the Pigeon, Sturgeon, and Maple Rivers began in 1966 and 15 treatments have been conducted to date at a combined cost of $435,000 USD per treatment. Treatments may become more difficult due to recent dam removals in the Pigeon (2016) and Maple Rivers (2018) that expanded habitat available to valued fishes and sea lamprey. At present, the landlocked population is less than 200 spawning adults, and those adults are generally smaller and may spawn earlier in the spring than adult sea lamprey from Lake Huron. Frequency of sea lamprey-induced wounding on steelhead ( Oncorhynchus mykiss ) and northern pike ( Esox lucius ) in Mullett Lake is less than 5%. Given increasing challenges of lampricide treatment, efforts to test other means of control such as sterile male release technique is on-going. The Cheboygan River represents a microcosm of the Great Lakes and is useful for learning about sea lamprey ecology and testing controls that supplement lampricides and barriers.

Michigan↗

USGS2021

Before the first meal: The elusive pre-feeding juvenile stage of the sea lamprey

Although sea lamprey ( Petromyzon marinus ) in the Laurentian Great Lakes have been studied intensively for more than 70 years, many questions remain about their complex life cycle. One of the least understood portions is the post-metamorphic stage (hereafter pre-feeding juvenile, PFJ) that occurs prior to parasitic feeding. PFJ must emerge from stream sediments and migrate downstream into nearshore feeding areas. Key uncertainties include the internal and exogenous triggers that regulate the timing and duration of the migration, and the mechanisms the animal uses to navigate, avoid predators, and locate their first host. However, many of these factors may vary predictably among natal streams in response to stable geomorphological and hydraulic characteristics that regulate the timing of movements (e.g., flood phenology), energetic costs (e.g., stream length), and risk (e.g., predator density). An improved understanding of the PFJ stage presents two opportunities to improve the success of sea lamprey control: (1) identification of streams where natural mortality during the PFJ stage is high, allowing for the reallocation of larval control to streams more likely to produce successful parasites, and (2) removal or killing of PFJs in streams where natural mortality is low. Either approach represents an opportunity to limit parasitic damage to valuable fish stocks. Here, we review the state of knowledge of the PFJ stage and identify critical knowledge gaps that, if addressed, could facilitate sea lamprey assessment and control by exploiting the behavior of PFJ as they outmigrate from streams in search of their first meal.

Journal of Great Lakes Research↗

USGS2021

Progress towards integrating an understanding of chemical ecology into sea lamprey control

The sea lamprey, Petromyzon marinus , is a destructive invader in the Laurentian Great Lakes that relies on several complex chemical cues to complete their life cycle. The central roles of chemical cues in sea lamprey reproduction provide opportunities to leverage knowledge of sea lamprey chemical ecology when developing alternative or supplemental strategies for sea lamprey control. A solid foundation has been laid regarding sea lamprey chemical ecology, with recent advances in our understanding of the migratory pheromone, male sex pheromone, and alarm cues broadening our fundamental understanding of the diversity, complexity, and evolution of chemical cues used by sea lamprey. Additionally, research applying semiochemicals in differing management scenarios has provided useful insights into the challenges of incorporating chemical cues into the sea lamprey control program. Here, we synthesize new findings related to fundamental research of chemosensory cues along with knowledge learned from management-based tests and explore options for integrating an understanding of chemical ecology into sea lamprey control in light of new knowledge. We also highlight current unknowns and future research needs that should be addressed prior to implementation of sea lamprey chemical ecology into the sea lamprey control program.

Great Lakes↗

USGS2021

A renewed philosophy about supplemental sea lamprey controls

Invasive sea lamprey ( Petromyzon marinus ) populations in the Laurentian Great Lakes have been reduced by up to 90% through the use of selective pesticides (lampricides) and physical sea lamprey barriers that block spawning migrations. Nevertheless, other control methods are needed to achieve integrated pest management objectives, delay biological resistance, and address societal pressure to reduce pesticide use and restore lotic connectivity through dam removals. Despite decades of research and scientific advances, new control tools that focus on controlling adult and juvenile life stages have been rare because tactics have not been cost-effective alternatives to lampricides and sea lamprey barriers. Here, we propose a renewed philosophy highlighting that new control methods need not be true alternatives to lampricides and sea lamprey barriers (i.e., have similar effectiveness), but instead can be useful as supplemental controls integrated with current methods, especially in places where current methods are less effective due to environmental or societal conditions. Current case studies pairing multiple supplemental controls together on two Lake Huron tributaries, the Black Mallard and Cheboygan Rivers, have shown promise in reducing sea lamprey reproductive success, the scope of lampricide treatments, and ultimately the number of juvenile sea lampreys produced. Additional case studies are planned and will be evaluated within a decade-long adaptive assessment plan.

Journal of Great Lakes Research↗

USGS2021

What can commercial fishery data in the Great Lakes reveal about juvenile sea lamprey (Petromyzon marinus) ecology and management?

The Laurentian Great Lakes of North America support a large and profitable freshwater fishery, but one continuously beset by parasitism from the invasive sea lamprey ( Petromyzon marinus ). Despite being the life stage that inflicts damage to the fishery, therefore necessitating a bi-national control program, our knowledge of juvenile sea lamprey ecology is poor and their response to control efforts are not assessed. Incidental capture of juvenile sea lamprey by commercial fishers is one means to collect data on this enigmatic life stage, and in Lake Huron such data have been collated since 1967. Here, we explore incidental captures of juvenile sea lamprey and their hosts from northern Lake Huron between 1987 and 2017 ( n = 33,246 observations) to address four objectives. Firstly, we document collection efforts by fishers to provide historical context to the dataset. Secondly, we pose and test a series of questions related to fishery encounter, host selection, growth, distribution, and sex ratio to highlight how these types of data can be informative regarding juvenile sea lamprey ecology. Results presented here could be used to develop biological hypotheses to be addressed in future work. Thirdly, we directly assessed whether juvenile sea lamprey capture data could be useful in corroborating trends observed in adult sea lamprey abundance and wounding, as well as in identifying abundance and wounding hotspots. Lastly, we summarize research and outreach efforts that have benefited from the capture of juvenile sea lamprey in recent years.

Great Lakes↗

USGS2021

Environmental factors influencing annual sucker (Catostomus sp.) migration into a Great Lakes tributary

Fish migration in rivers is a growing area of concern as mounting anthropogenic influences, particularly fragmentation from dams and barriers, constitute major threats to global river species diversity. Barriers can impede the movement of fishes between areas critical to the completion of their lifecycle, affecting both population and ecosystem viability. In response, fish passage solutions have been identified as a critical need to maintain fisheries viability in the Laurentian Great Lakes, and around the world. Pivotal to the success of these fish passage solutions is a more complete understanding of the movement phenology and environmental cues that instigate migration. We used a dual-frequency identification sonar (DIDSON) to evaluate environmental triggers of river entry during spring and summer for three size classes of migratory fishes in the Boardman River, a Lake Michigan tributary. Our results indicate that medium size fish (>30 cm and < 50 cm), primarily composed of white sucker Catostomus commersonii and longnose sucker Catostomus catostomus were 21% more likely to enter the river at sunset and 25% less likely at midnight in comparison to midday. Entry rates of medium fish increased 6% for every 1 °C increase in river temperature, 4% for every 1 m 3 /s increase in river discharge from the day prior, and were reduced by 1% for every 10 cm increase in lake level. Understanding these processes in the tributaries of the Great Lakes is important to inform the fish passage solutions currently being developed for the Boardman River, and to inform management regulations for Great Lakes migratory fishes.

Michigan↗

USGS2021

An adaptive management implementation framework for evaluating supplemental sea lamprey (Petromyzon marinus) controls in the Laurentian Great Lakes

Invasive sea lamprey ( Petromyzon marinus ) populations in the Laurentian Great Lakes Basin have been suppressed for over 60 years primarily by migration barriers and lamprey-specific pesticides. Improving control outcomes by supplementing barriers and pesticides with additional control strategies has been a long-standing objective of managers and stakeholders, but progress towards this objective has been limited. We developed an adaptive management implementation framework and applied it to this objective. The framework consists of a set of adaptive management implementation goals (develop effective monitoring practices, develop effective participatory process, and conduct management experiments), a set of aspirational targets hypothesized to be related to Sea Lamprey Control Program adaptive capacity (multi-level political and social organization, creation of safe-to-fail decision making arenas, and effective use of multi-criteria decision analysis), and a feedback loop linking adaptive capacity and progress towards adaptive management implementation goals. Progress towards improving sea lamprey control outcomes by integrating supplemental control strategy into the Sea Lamprey Control Program may be possible through adaptive management implementation.

Great Lakes↗

USGS2021

A seasonal electric barrier blocks invasive adult sea lamprey (Petromyzon marinus) and reduces production of larvae

Sea lamprey ( Petromyzon marinus ) control is achieved in the Laurentian Great Lakes by applying lamprey-specific pesticides (lampricides) to habitats containing larval sea lamprey. Lampricide treatments cost less and are more effective in watersheds where dams block adult sea lamprey migration and limit larval distribution relative to watersheds with no barriers to migration. However, dams impound water and can block movement of valued fishes, outcomes that are untenable for some stakeholders. Here, a seasonal and non-physical barrier of pulsed direct electrical current was tested to block adult sea lamprey while also monitoring the movement and mortality of non-target fish species. The electric barrier was operated in the Black Mallard River, a tributary to northern Lake Huron, March through August 2016–2018. The electric field blocked adult sea lamprey; 1056 adult sea lamprey were captured downstream of the electric field and two were captured upstream of the electric barrier over the three-year study. In 2018, larval sea lamprey abundance upstream of the barrier was about 50% less than historical averages, and genetic analysis found that roughly 98% of larvae upstream of the barrier were spawned in years prior to barrier installation. When the barrier was electrified, non-target fish species were blocked, and a small percentage (<3%) were killed. This study demonstrated that a seasonally deployed electric barrier can reduce the abundance of larval sea lamprey upstream without impounding water, but effects on the movements and survival of other fish species remain a concern.

Michigan↗

USGS2021

A review of sea lamprey dispersal and population structure in the Great Lakes and the implications for control

Understanding the population structure of invasive sea lamprey ( Petromyzon marinus ) in the Great Lakes basin is essential for an effective control program. We review knowledge of lake connectivity, dispersal during the parasitic stage, and results from phenotypic, demographic, and genetic studies to evaluate how sea lamprey populations are structured. There is no evidence for contemporary movement between Lake Ontario and the Atlantic population, although it appears possible. Dispersal between Lake Ontario and the Finger Lakes is more likely, as is contemporary movement between Lakes Ontario and Erie via the Welland Canal, although neither has been directly observed. Downstream movement from Lake Erie to Lake Ontario via the Niagara River has been reported. Bidirectional movement between Lakes Erie and Huron has been observed, and movement of sea lamprey among the upper Great Lakes (especially between Lakes Huron and Michigan) is relatively common, although complete mixing likely does not occur. The maximum straight-line dispersal distance reported for a tagged sea lamprey was 628 km between the St. Marys River and western Lake Erie. Genetic population studies using a variety of molecular markers generally found weak but significant broad-scale population structure (e.g., between freshwater and anadromous populations, and among Lake Ontario, Lake Erie, and the upper Great Lakes), but finer-scale structure was rarely detected. Nevertheless, some within-basin structure is suggested by regional differences in phenotypic and demographic traits (e.g., sex ratio, body size). Further study will be important because management is most efficiently targeted when the geography of demographically independent populations is well-characterized.

Lake Ontario↗

USGS2021

Exploiting the physiology of lampreys to refine methods of control and conservation

Lampreys (order: Petromyzontiformes) represent one of two extant groups of jawless fishes, also called cyclostomes. Lampreys have a variety of unique features that distinguish them from other fishes. Here we review the physiological features of lampreys that have contributed to their evolutionary and ecological success. The term physiology is used broadly to also include traits involving multiple levels of biological organization, like swimming performance, that have a strong but not exclusively physiological basis. We also provide examples of how sea lamprey traits are currently being used or investigated to control invasive populations in the Great Lakes, such as reduced capacity to detoxify lampricides, inability to surmount low barriers or dams, and sensitivity to several lamprey-specific chemosensory pheromones and alarm cues. Specific suggestions are also provided for how an improved knowledge of lamprey physiological traits could be exploited for more effective conservation of native lampreys and lead to the development of next generation sea lamprey control and conservation tools.

Journal of Great Lakes Research↗

USGS2021

Foreword: Control and conservation of lampreys beyond 2020 - Proceedings from the 3rd Sea Lamprey International Symposium (SLIS III)

Introduction to the special issue on the 3rd Sea Lamprey International Symposium. The compiled papers in this special issue consist of a combination of syntheses requested in advance of the symposium and perspectives that emerged from the symposium break-out discussions. These written contributions address the symposium goals of updating our understanding of sea lamprey control and research on lampreys since SLIS II and of exploring new ideas and posing new methods for controlling sea lamprey in the Great Lakes and supporting conservation of lampreys in their native ranges.

Journal of Great Lakes Research↗