Geology topics

Nancy Thomas

Publications and source records attributed to Nancy Thomas.

7 recordsLinked to original sources

USGS2024

Manganese-rich sandstones as an indicator of ancient oxic lake water conditions in Gale crater, Mars

Manganese has been observed on Mars by the NASA Curiosity rover in a variety of contexts and is an important indicator of redox processes in hydrologic systems on Earth. Within the Murray formation, an ancient primarily fine-grained lacustrine sedimentary deposit in Gale crater, Mars, have observed up to 45× enrichment in manganese and up to 1.5× enrichment in iron within coarser grained bedrock targets compared to the mean Murray sediment composition. This enrichment in manganese coincides with the transition between two stratigraphic units within the Murray: Sutton Island, interpreted as a lake margin environment, and Blunts Point, interpreted as a lake environment. On Earth, lacustrine environments are common locations of manganese precipitation due to highly oxidizing conditions in the lakes. Here, we explore three mechanisms for ferromanganese oxide precipitation at this location: authigenic precipitation from lake water along a lake shore, authigenic precipitation from reduced groundwater discharging through porous sands along a lake shore, and early diagenetic precipitation from groundwater through porous sands. All three scenarios require highly oxidizing conditions and we discuss oxidants that may be responsible for the oxidation and precipitation of manganese oxides. This work has important implications for the habitability of Mars to microbes that could have used Mn redox reactions, owing to its multiple redox states, as an energy source for metabolism.

JGR Planets↗

USGS2020

Canine distemper virus in the sea otter population (Enhydra lutris) in Washington State, USA

Before 2001, all serosurveys for morbilliviruses in sea otters ( Enhydra lutris ) in California, Washington, and Alaska, USA, documented a 0% seroprevalence. The first published serologic detections of morbillivirus in sea otters occurred in 2001–02 in live-captured Washington sea otters, with a documented 80% seroprevalence. We conducted a retrospective study of sea otter cases from 1989 to 2010 compiled at the US Geological Survey, National Wildlife Health Center to identify cases of morbilliviral disease in Washington sea otters and to characterize the disease using immunohistochemistry, reverse transcription (RT)-PCR, genetic sequencing, virus isolation, and serology. We identified six cases of morbilliviral disease and 12 cases of morbilliviral infection in this population of sea otters during 2000–10. Significant histologic findings included inflammation in the white and gray matter of the brain characterized by lymphoplasmacytic perivascular cuffing, neuronal necrosis, and satellitosis in gray matter and by spongiosis, myelin degeneration, spheroids, and gemistocytes in white matter. Intranuclear and intracytoplasmic viral inclusion bodies were found in neurons, Purkinje cells, and glia. Immunohistochemistry for canine distemper virus (CDV) showed positive staining in neurons, glial cells, and cell processes. A pan-morbillivirus RT-PCR with subsequent restriction endonuclease digestion or sequencing identified CDV. Virus isolation was not successful. Two sea otters with morbilliviral encephalitis showed greater antibody titers to CDV than phocine distemper virus. Histologic changes were confined to the central nervous system and resembled neurologic canine distemper in domestic dogs. Cases of sea otters with morbilliviral infection without histologic changes could represent early infections or incompletely cleared sublethal infections. We found that morbillivirus was present in the Washington sea otter population as early as 2000, and we provide a description of the pathology of canine distemper in sea otters.

Washington↗

USGS2010

Automated masking of cloud and cloud shadow for forest change analysis using Landsat images

Accurate masking of cloud and cloud shadow is a prerequisite for reliable mapping of land surface attributes. Cloud contamination is particularly a problem for land cover change analysis, because unflagged clouds may be mapped as false changes, and the level of such false changes can be comparable to or many times more than that of actual changes, even for images with small percentages of cloud cover. Here we develop an algorithm for automatically flagging clouds and their shadows in Landsat images. This algorithm uses clear view forest pixels as a reference to define cloud boundaries for separating cloud from clear view surfaces in a spectral-temperature space. Shadow locations are predicted according to cloud height estimates and sun illumination geometry, and actual shadow pixels are identified by searching the darkest pixels surrounding the predicted shadow locations. This algorithm produced omission errors of around 1% for the cloud class, although the errors were higher for an image that had very low cloud cover and one acquired in a semiarid environment. While higher values were reported for other error measures, most of the errors were found around the edges of detected clouds and shadows, and many were due to difficulties in flagging thin clouds and the shadow cast by them, both by the developed algorithm and by the image analyst in deriving the reference data. We concluded that this algorithm is especially suitable for forest change analysis, because the commission and omission errors of the derived masks are not likely to significantly bias change analysis results.

International Journal of Remote Sensing↗

USGS2010

An automated approach for reconstructing recent forest disturbance history using dense Landsat time series stacks

A highly automated algorithm called vegetation change tracker (VCT) has been developed for reconstructing recent forest disturbance history using Landsat time series stacks (LTSS). This algorithm is based on the spectral–temporal properties of land cover and forest change processes, and requires little or no fine tuning for most forests with closed or near close canopy cover. It was found very efficient, taking 2–3 h on average to analyze an LTSS consisting of 12 or more Landsat images using an average desktop PC. This LTSS-VCT approach has been used to examine disturbance patterns with a biennial temporal interval from 1984 to 2006 for many locations across the conterminous U.S. Accuracy assessment over 6 validation sites revealed that overall accuracies of around 80% were achieved for disturbances mapped at individual year level. Average user's and producer's accuracies of the disturbance classes were around 70% and 60% in 5 of the 6 sites, respectively, suggesting that although forest disturbances were typically rare as compared with no-change classes, on average the VCT detected more than half of those disturbances with relatively low levels of false alarms. Field assessment revealed that VCT was able to detect most stand clearing disturbance events, including harvest, fire, and urban development, while some non-stand clearing events such as thinning and selective logging were also mapped in western U.S. The applicability of the LTSS-VCT approach depends on the availability of a temporally adequate supply of Landsat imagery. To ensure that forest disturbance records can be developed continuously in the future, it is necessary to plan and develop observational capabilities today that will allow continuous acquisition of frequent Landsat or Landsat-like observations.

Remote Sensing of Environment↗

USGS2009

Estimating cause-specific mortality rates using recovered carcasses

Stranding networks, in which carcasses are recovered and sent to diagnostic laboratories for necropsy and determination of cause of death, have been developed to monitor the health of marine mammal and bird populations. These programs typically accumulate comprehensive, long-term datasets on causes of death that can be used to identify important sources of mortality or changes in mortality patterns that lead to management actions. However, the utility of these data in determining cause-specific mortality rates has not been explored. We present a maximum likelihood-based approach that partitions total mortality rate, estimated by independent sources, into cause-specific mortality rates. We also demonstrate how variance estimates are derived for these rates. We present examples of the method using mortality data for California sea otters ( Enhydra lutris nereis ) and Florida manatees ( Trichechus manatus latirostris ).

California, Florida↗

USGS2009

Postmortem evaluation of reintroduced migratory Whooping Cranes in eastern North America

Reintroduction of endangered Whooping Cranes ( Grus americana ) in eastern North America has successfully established a migratory population between Wisconsin and Florida. Eighty birds (47 males, 33 females) were released between 2001 and 2006, and all birds were tracked following release with satellite and/or VHF monitoring devices. By the end of 2006, 17 deaths (12 males, five females) were recorded from this population. Postmortem findings and field data were evaluated for each bird to determine the cause of death. Causes included predation ( n =8, 47%), trauma ( n =2, 12%), and degenerative disease ( n =1, 6%); the cause of death was undetermined for 35% ( n =6) of the birds. Based on physical evidence, the primary predator of the birds was the bobcat ( Lynx rufus ). Limited roosting habitat availability or bird behavior were likely prime factors in the occurrence of predation. Traumatic injuries and mortality were caused by gunshot, electrical utility lines, and an unknown source. The lone case of degenerative disease was due to chronic exertional myopathy associated with translocation. Available postmortem testing did not indicate the presence of infectious disease in this limited sample.

Alabama, Florida, Indiana, Michigan, South Carolin↗

USGS1991

Capture myopathy in an endangered sandhill crane (Grus canadensis pulla)

Despite precautions to protect cranes, a 3-year-old endangered Mississippi sandhill crane ( Grus canadensis pulla ) was found caught in a leghold trap in Gautier, Mississippi, on 11 November 1987. The bird could have been in the trap for up to 16 hr and was standing and struggling to escape when it was discovered. Serum chemistries of the crane on 12 November revealed elevated lactic dehydrogenase (2,880 IU/L), alanine aminotransferase (ALT) (152 IU/L), and aspartate aminotransferase (AST) (>1,000 IU/L) values. Following surgical amputation of a fractured toe, the bird never attempted to stand and was unable to stand even when manually supported. Radiographic and physical examination of both legs did not reveal any anatomical abnormalities. Despite medical care, including supportive therapy, no improvement was observed in the bird's ability to stand and to support itself, and the bird died on 19 November. Serum chemistries and the postmortem and histopathologic findings were compatible with capture myopathy described in other species. Because of the possible susceptibility of long-legged birds such as the Mississippi sandhill crane to capture myopathy, special care must be taken when trapping, handling, chemically immobilizing, and transporting these species. In addition, precautions must be taken when conducting a predator-control program to ensure that nontarget wildlife are unlikely to encounter traps. Capture myopathy has only rarely been observed in wild birds, and this case represents the first report in a Mississippi sandhill crane.

Mississippi↗