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Martin C. Thoms

Publications and source records attributed to Martin C. Thoms.

9 recordsLinked to original sources

Chapter 24 - Resilience-based challenges and opportunities for fisheries management in Anthropocene rivers

Few pristine rivers remain worldwide, as they are among the most anthropogenically modified ecosystems. We suggest the geomorphology , hydrology and ecology of Anthropocene rivers are fundamentally different from historical natural rivers. These changes challenge conventional fisheries management practices, suggesting the tools supporting fisheries management may require expansion so that strategies match the scope and scale of present-day problems. We believe that resilience-thinking concepts offer substantial benefits for fisheries managers in Anthropocene rivers. When viewing resilience as a property of an ecosystem, the focus should be increasing the capacity of the system to self-organise and adapt to withstand regime shifts from internal and external disturbances. As an approach, a resilience-based perspective favours managing for sustainability and stewardship of fisheries by placing an emphasis on enhancing the capacity of complex systems to cope with dynamic change. Three case studies presented herein use resilience thinking to highlight challenges and opportunities for fisheries management in Anthropocene rivers from Europe, North America and Australia. Ultimately, a resilience approach to fisheries management emphasises increasing the ecological, institutional and societal capacities to deal with change, whether those changes be hydroclimatic, geomorphic, biological or social, to sustain desirable subsistence, recreational and commercial fisheries.

Book chapter

Land use effects on sediment nutrient processes in a heavily modified watershed using structural equation models

Contemporary land use can affect sediment nutrient processes in rivers draining heavily modified watersheds; however, studies linking land use to sediment nutrient processes in large river networks are limited. In this study, we developed and evaluated structural equation models (SE models) for denitrification and phosphorus retention capacity to determine direct and indirect linkages between current land use and sediment nutrient processes during baseflow in the Fox River watershed, Wisconsin USA. A large spatial-scale dataset used for this study included sediment nitrogen and phosphorus retention measurements and land use information for 106 sites. The SE models for the Fox River watershed identified direct links between current land use and in-stream sediment nutrient processes. Sub-watersheds with agricultural land consisting of more natural land cover had lower surface water nitrate concentrations and higher denitrification enzyme activity than sub-watersheds with less alternative cover. This suggests that best management practices implemented in the Fox River watershed that restore natural land cover can improve water quality through nitrogen removal on the agricultural landscape and in the river network. Best management practices are not having the same measurable affect on phosphorus in the river network, most likely due to legacy phosphorus stored in the sediment.

Wisconsin

Complex response of sediment phosphorus to land use and management within a river network

Rivers affected by anthropogenic nutrient inputs can retain some of the phosphorus (P) load through sediment retention and burial. Determining the influence of land use and management on sediment P concentrations and P retention in fluvial ecosystems is challenging because of different stressors operating at multiple spatial and temporal scales. In this study, we sought to determine how land use and management influenced sediment P concentrations and P retention within a river network draining a watershed modified by mixed land use activities; the Fox River, Wisconsin, USA. Results show current land use had no detectable effect on sediment P concentrations, and only a small potential effect on P retention capacity. However, sites draining predominantly forested areas were associated with riverbed sediments less saturated in P, whereas sites draining mainly agricultural areas were more likely to release sediment-bound P. Current management actions, including the implementation of best management practices, had a small positive effect on P retention capacity but had no observed effect on sediment P concentrations. Our results suggest that fine riverbed sediment throughout the Fox River network is saturated with P and has the capability to release P when water column P concentrations are low. These P-saturated riverbed sediments represent a potential legacy effect of past land use disturbances on P dynamics in the Fox River network.

Wisconsin

Denitrification in the river network of a mixed land use watershed: Unpacking the complexities

River networks have the potential to permanently remove nitrogen through denitrification. Few studies have measured denitrification rates within an entire river network or assessed how land use affect rates at larger spatial scales. We sampled 108 sites throughout the network of the Fox River watershed, Wisconsin, to determine if land use influence sediment denitrification rates, and to identify zones of elevated sediment denitrification rates (hot spots) within the river network. Partial least squares regression models identified variables from four levels of organization (river bed sediment, water column, riparian zone, and watershed) that best predicted denitrification rates throughout the river network. Nitrate availability was the most important predictor of denitrification rates, while land cover was not always a good predictor of local-scale nitrate concentrations. Thus, land cover and denitrification rate were not strongly related across the Fox River watershed. A direct relationship between denitrification rate and watershed land cover occurred only in the Wolf River sub-watershed, the least anthropogenically disturbed of the sub-watersheds. Denitrification hot spots were located throughout the river network, regardless of watershed land use, with hot spot location being determined primarily by nitrate availability. In the Fox River watershed, when nitrate was abundant, river bed sediment character influenced denitrification rate, with higher denitrification rates at sites with fine, organic sediments. These findings suggest that denitrification occurring throughout an entire river network, from headwater streams to larger rivers, can help reduce nitrogen loads to downstream water bodies.

Wisconsin

Beyond the edge: Linking agricultural landscapes, stream networks, and best management practices

Despite much research and investment into understanding and managing nutrients across agricultural landscapes, nutrient runoff to freshwater ecosystems is still a major concern. We argue there is currently a disconnect between the management of watershed surfaces (agricultural landscape) and river networks (riverine landscape). These landscapes are commonly managed separately, but there is limited cohesiveness between agricultural landscape-focused research and river science, despite similar end goals. Interdisciplinary research into stream networks that drain agricultural landscapes is expanding but is fraught with problems. Conceptual frameworks are useful tools to order phenomena, reveal patterns and processes, and in interdisciplinary river science, enable the joining of multiple areas of understanding into a single conceptual–empirical structure. We present a framework for the interdisciplinary study and management of agricultural and riverine landscapes. The framework includes components of an ecosystems approach to the study of catchment–stream networks, resilience thinking, and strategic adaptive management. Application of the framework is illustrated through a study of the Fox Basin in Wisconsin, USA. To fully realize the goal of nutrient reduction in the basin, we suggest that greater emphasis is needed on where best management practices (BMPs) are used within the spatial context of the combined watershed–stream network system, including BMPs within the river channel. Targeted placement of BMPs throughout the riverine landscape would increase the overall buffering capacity of the system to nutrient runoff and thus its resilience to current and future disturbances.

Journal of Environmental Quality

An index of floodplain surface complexity

Floodplain surface topography is an important component of floodplain ecosystems. It is the primary physical template upon which ecosystem processes are acted out, and complexity in this template can contribute to the high biodiversity and productivity of floodplain ecosystems. There has been a limited appreciation of floodplain surface complexity because of the traditional focus on temporal variability in floodplains as well as limitations to quantifying spatial complexity. An index of floodplain surface complexity (FSC) is developed in this paper and applied to eight floodplains from different geographic settings. The index is based on two key indicators of complexity, variability in surface geometry (VSG) and the spatial organisation of surface conditions (SPO), and was determined at three sampling scales. FSC, VSG, and SPO varied between the eight floodplains and these differences depended upon sampling scale. Relationships between these measures of spatial complexity and seven geomorphological and hydrological drivers were investigated. There was a significant decline in all complexity measures with increasing floodplain width, which was explained by either a power, logarithmic, or exponential function. There was an initial rapid decline in surface complexity as floodplain width increased from 1.5 to 5 km, followed by little change in floodplains wider than 10 km. VSG also increased significantly with increasing sediment yield. No significant relationships were determined between any of the four hydrological variables and floodplain surface complexity.

Hydrology and Earth System Sciences

Measuring spatial patterns in floodplains: A step towards understanding the complexity of floodplain ecosystems: Chapter 6

Floodplains can be viewed as complex adaptive systems (Levin, 1998) because they are comprised of many different biophysical components, such as morphological features, soil groups and vegetation communities as well as being sites of key biogeochemical processing (Stanford et al., 2005). Interactions and feedbacks among the biophysical components often result in additional phenomena occuring over a range of scales, often in the absence of any controlling factors (sensu Hallet, 1990). This emergence of new biophysical features and rates of processing can lead to alternative stable states which feed back into floodplain adaptive cycles (cf. Hughes, 1997; Stanford et al., 2005). Interactions between different biophysical components, feedbacks, self emergence and scale are all key properties of complex adaptive systems (Levin, 1998; Phillips, 2003; Murray et al., 2014) and therefore will influence the manner in which we study and view spatial patterns. Measuring the spatial patterns of floodplain biophysical components is a prerequisite to examining and understanding these ecosystems as complex adaptive systems. Elucidating relationships between pattern and process, which are intrinsically linked within floodplains (Ward et al., 2002), is dependent upon an understanding of spatial pattern. This knowledge can help river scientists determine the major drivers, controllers and responses of floodplain structure and function, as well as the consequences of altering those drivers and controllers (Hughes and Cass, 1997; Whited et al., 2007). Interactions and feedbacks between physical, chemical and biological components of floodplain ecosystems create and maintain a structurally diverse and dynamic template (Stanford et al., 2005). This template influences subsequent interactions between components that consequently affect system trajectories within floodplains (sensu Bak et al., 1988). Constructing and evaluating models used to predict floodplain ecosystem responses to natural and anthropogenic disturbances therefore require quantification of spatial pattern (Asselman and Middelkoop, 1995; Walling and He, 1998). Quantifying these patterns also provides insights into the spatial and temporal domains of structuring processes as well as enabling the detection of self-emergent phenomena, environmental constraints or anthropogenic interference (Turner et al., 1990; Holling, 1992; De Jager and Rohweder, 2012). Thus, quantifying spatial pattern is an important building block on which to examine floodplains as complex adaptive systems (Levin, 1998). Approaches to measuring spatial pattern in floodplains must be cognisant of scale, self-emergent phenomena, spatial organisation, and location. Fundamental problems may arise when patterns observed at a site or transect scale are scaled-up to infer processes and patterns over entire floodplain surfaces (Wiens, 2002; Thorp et al., 2008). Likewise, patterns observed over the entire spatial extent of a landscape can mask important variation and detail at finer scales (Riitters et al., 2002). Indeed, different patterns often emerge at different scales (Turner et al., 1990) because of hierarchical structuring processes (O'Neill et al., 1991). Categorising data into discrete, homogeneous and predefined spatial units at a particular scale (e.g. polygons) creates issues and errors associated with scale and subjective classification (McGarigal et al., 2009; Cushman et al., 2010). These include, loss of information within classified ‘patches’, as well as the ability to detect the emergence of new features that do not fit the original classification scheme. Many of these issues arise because floodplains are highly heterogeneous and have complex spatial organizations (Carbonneau et al., 2012; Legleiter, 2013). As a result, the scale and location at which measurements are made can influence the observed spatial patterns; and patterns may not be scale independent or applicable in different geomorp

Book chapter

Floodplain complexity and surface metrics: influences of scale and geomorphology

Many studies of fluvial geomorphology and landscape ecology examine a single river or landscape, thus lack generality, making it difficult to develop a general understanding of the linkages between landscape patterns and larger-scale driving variables. We examined the spatial complexity of eight floodplain surfaces in widely different geographic settings and determined how patterns measured at different scales relate to different environmental drivers. Floodplain surface complexity is defined as having highly variable surface conditions that are also highly organised in space. These two components of floodplain surface complexity were measured across multiple sampling scales from LiDAR-derived DEMs. The surface character and variability of each floodplain were measured using four surface metrics; namely, standard deviation, skewness, coefficient of variation, and standard deviation of curvature from a series of moving window analyses ranging from 50 to 1000 m in radius. The spatial organisation of each floodplain surface was measured using spatial correlograms of the four surface metrics. Surface character, variability, and spatial organisation differed among the eight floodplains; and random, fragmented, highly patchy, and simple gradient spatial patterns were exhibited, depending upon the metric and window size. Differences in surface character and variability among the floodplains became statistically stronger with increasing sampling scale (window size), as did their associations with environmental variables. Sediment yield was consistently associated with differences in surface character and variability, as were flow discharge and variability at smaller sampling scales. Floodplain width was associated with differences in the spatial organization of surface conditions at smaller sampling scales, while valley slope was weakly associated with differences in spatial organisation at larger scales. A comparison of floodplain landscape patterns measured at different scales would improve our understanding of the role that different environmental variables play at different scales and in different geomorphic settings.

Geomorphology

Measuring floodplain spatial patterns using continuous surface metrics at multiple scales

Interactions between fluvial processes and floodplain ecosystems occur upon a floodplain surface that is often physically complex. Spatial patterns in floodplain topography have only recently been quantified over multiple scales, and discrepancies exist in how floodplain surfaces are perceived to be spatially organised. We measured spatial patterns in floodplain topography for pool 9 of the Upper Mississippi River, USA, using moving window analyses of eight surface metrics applied to a 1 × 1 m 2 DEM over multiple scales. The metrics used were Range , SD , Skewness , Kurtosis , CV , SD CURV , Rugosity , and Vol:Area , and window sizes ranged from 10 to 1000 m in radius. Surface metric values were highly variable across the floodplain and revealed a high degree of spatial organisation in floodplain topography. Moran's I correlograms fit to the landscape of each metric at each window size revealed that patchiness existed at nearly all window sizes, but the strength and scale of patchiness changed within window size, suggesting that multiple scales of patchiness and patch structure exist in the topography of this floodplain. Scale thresholds in the spatial patterns were observed, particularly between the 50 and 100 m window sizes for all surface metrics and between the 500 and 750 m window sizes for most metrics. These threshold scales are ~ 15–20% and 150% of the main channel width (1–2% and 10–15% of the floodplain width), respectively. These thresholds may be related to structuring processes operating across distinct scale ranges. By coupling surface metrics, multi-scale analyses, and correlograms, quantifying floodplain topographic complexity is possible in ways that should assist in clarifying how floodplain ecosystems are structured.

Geomorphology