Geology topics

Mandy L. Annis

Publications and source records attributed to Mandy L. Annis.

10 recordsLinked to original sources

USGS2019

Pallid sturgeon basin-wide contaminants assessment

Pallid sturgeon (Scaphirhynchus albus), listed as endangered in 1990 under the federal Endangered Species Act (United States Fish and Wildlife Service (USFWS), 1990), have declined due to habitat loss, commercial fishing, and hybridization. Pollution in the Missouri and Mississippi Rivers has to-date only received minor attention as a factor in the on-going decline of wild pallid sturgeon populations (Jacobson et al. 2016a; Bergman 2008). Pallid sturgeon experts and contaminant specialists conceived of the Pallid Sturgeon Basin-Wide Contaminants Assessment (Assessment) to identify potentially harmful contaminants (contaminants of concern), their distribution within pallid sturgeon habitat, and their effects on pallid sturgeon at the landscape level. Extant water quality and analytical chemistry data from samples of river water, sediment, and sturgeon tissues from past studies, assessments, or monitoring activities throughout the species’ range were used to establish a list of contaminants. The list includes: metal and non-metal elements, pesticides, organic industrial chemicals, hormones, nutrients, and other potential water quality contaminants. Environmental samples collected from January 1, 2001 through December 31, 2014, when available, were used for all evaluations. This report is effectively a screening level hazard assessment whereby contituents of concern that may pose a potential harm to pallid sturgeon have been identified. These constituents of concern warrant further examination to determine the level of risk they pose to pallid sturgeon. The Assessment process was one of comparing the existing environmental data for individual constituents to reference values for adverse effects on fish specifically or aquatic life generally. The product of the Assessment is a simplified summary that is geographically organized by pallid sturgeon management unit that generally categorizes each individual contaminant or water quality constituent according to operationally defined levels of concern. This hazard assessment identifies potential constituents of concern to pallid sturgeon and may support prioritization for future data collection and research to enable a quantitative risk assessment. Regional data density at spatial and temporal scales notwithstanding, the Assessment points to some generalities in contaminant concerns within and across management units. Metals but not pesticides are the predominant contaminant of concern in the Great Plains Management Unit (GPMU). In the Central Lowlands Management Unit (CLMU), selenium exceeds benchmark levels. Triazine herbicides are potentially of concern in all but the GPMU. Concentrations of legacy contaminants such as PCBs and DDT and its metabolites exceeded benchmarks in samples from the CLMU, Interior Highlands Mangement Unit (IHMU), and Coastal Plains Management Unit (CPMU), but local and national trends indicate environmental levels of these contaminants continue to decline. Observed concentrations of nutrients and indicators of nutrient pollution were above benchmark levels throughout the pallid sturgeon’s range; however, the significance for pallid sturgeon health specifically is unknown. Almost no information exists on contemporary contaminants of concern such as the natural and synthetic estrogens (estradiol, ethinyl estradiol, and estrone) or polybrominated diphenyls (PBDEs). There are considerable informational data gaps for contaminants throughout the species’ range. Water quality measurements were the most frequent data encountered whereas, sediment and tissue data were orders of magnitude less frequent. The paucity of sediment and tissue concentrations, particularly the latter, prevents any meaningful conclusions regarding adverse effects of these contaminants on the growth and reproduction of pallid sturgeon. However, the Assessment could form the basis for regional workshops with subject matter specialists to develop plans to evaluate the contaminants most likely to affect pallid sturgeon health.

Missouri River basin, Mississippi River basin↗

USGS2017

Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012

Despite being detected at low levels in surface waters and sediments across the United States, contaminants of emerging concern (CECs) in the Great Lakes Basin are not well characterized in terms of spatial and temporal occurrence. Additionally, although the detrimental effects of exposure to CECs on fish and wildlife have been documented for many CECs in laboratory studies, we do not adequately understand the implications of the presence of CECs in the environment. Based on limited studies using current environmentally relevant concentrations of chemicals, however, risks to fish and wildlife are evident. As a result, there is an increasing urgency to address data gaps that are vital to resource management decisions. The U.S. Fish and Wildlife Service, in collaboration with the U.S. Geological Survey, is leading a Great Lakes Basin-wide evaluation of CECs (CEC Project) with the objectives to (a) characterize the spatial and temporal distribution of CECs; (b) evaluate risks to fish and wildlife resources; and (c) develop tools to aid resource managers in detecting, averting, or minimizing the ecological consequences to fish and wildlife that are exposed to CECs. This report addresses objective (a) of the CEC Project, summarizing sediment and water chemistry data collected from 2010 to 2012 and fish liver tissue chemistry data collected in 2012; characterizes the sampling locations with respect to potential sources of CECs in the landscape; and provides an initial interpretation of the variation in CEC concentrations relative to the identified sources. Data collected during the first three years of our study, which included 12 sampling locations and analysis of 134 chemicals, indicate that contaminants were more frequently detected in sediment compared to water. Chemicals classified as alkyphenols, flavors/ fragrances, hormones, PAHs, and sterols had higher average detection frequencies in sediment compared to water, while the opposite was observed for pesticides, pharmaceuticals, and plasticizers/flame retardants. The St. Louis River and Maumee River sampling locations had the most CEC detections in water and sediment, relative to other sites, as well as the largest number of maximum detected concentrations across all sites in the Basin. No consistent temporal CEC occurrence patterns were observed at locations sampled multiple times each day. Most appearances and increases in chemical concentrations in sediments occurred at sites immediately downstream from wastewater treatment plants and at sites with predominantly developed land use. The location with the most observed appearances and increases was the St. Louis River. Perfluorinated compounds were commonly detected in fish liver tissues with detections in 100% of both benthic and pelagic species. The occurrence of these chemicals in liver tissue of benthic and pelagic species was generally similar. Abstract

Great Lakes Basin↗

USGS2016

Missouri River Scaphirhynchus albus (pallid sturgeon) effects analysis—Integrative report 2016

The Missouri River Pallid Sturgeon Effects Analysis was designed to carry out three components of an assessment of how Missouri River management has affected, and will affect, population dynamics of endangered Scaphirhynchus albus (pallid sturgeon): (1) collection of reliable scientific information, (2) critical assessment and synthesis of available data and analyses, and (3) analysis of the effects of actions on listed species and their habitats. This report is a synthesis of the three components emphasizing development of lines of evidence relating potential future management actions to pallid sturgeon population dynamics. We address 21 working management hypotheses that emerged from an expert opinion-based filtering process. The ability to quantify linkages from abiotic changes to pallid sturgeon population dynamics is compromised by fundamental information gaps. Although a substantial foundation of pallid sturgeon science has been developed during the past 20 years, our efforts attempt to push beyond that understanding to provide predictions of how future management actions may affect pallid sturgeon responses. For some of the 21 hypotheses, lines of evidence are limited to theoretical deduction, inference from sparse empirical datasets, or expert opinion. Useful simulation models have been developed to predict the effects of management actions on survival of drifting pallid sturgeon free embryos in the Yellowstone and Upper Missouri River complex (hereafter referred to as the “upper river”), and to assess the effects of flow and channel reconfigurations on habitat availability in the Lower Missouri River, tributaries, and Mississippi River downstream of Gavins Point Dam (hereafter referred to as the “lower river”). A population model also has been developed that can be used to assess sensitivity of the population to survival of specific life stages, assess some hypotheses related to stocking decisions, and explore a limited number of management scenarios. Consideration of lines of evidence for each of the 21 hypotheses includes a discussion of how the degree of uncertainty and risk associated with each hypothesis may guide science and implementation strategies. Implementation strategies include full implementation in the field, limited implementations as field-scale experiments, or (in the case of greatest uncertainty) implementation as learning actions, including research and opportunistic experiments or field-based gradient studies. Given the substantive uncertainties associated with pallid sturgeon population dynamics and the need to continually assimilate and assess new information, we proposed that an Effects Analysis-like process should be considered an integral part of ongoing Missouri River adaptive management.

Missouri↗

USGS2016

Science information to support Missouri River Scaphirhynchus albus (pallid sturgeon) effects analysis

The Missouri River Pallid Sturgeon Effects Analysis (EA) was commissioned by the U.S. Army Corps of Engineers to develop a foundation of understanding of how pallid sturgeon ( Scaphirhynchus albus ) population dynamics are linked to management actions in the Missouri River. The EA consists of several steps: (1) development of comprehensive, conceptual ecological models illustrating pallid sturgeon population dynamics and links to management actions and other drivers; (2) compilation and assessment of available scientific literature, databases, and models; (3) development of predictive, quantitative models to explore the system dynamics and population responses to management actions; and (4) analysis and assessment of effects of system operations and actions on species’ habitats and populations. This report addresses the second objective, compilation and assessment of relevant information. Scientific information on pallid sturgeon and its environment has grown substantially during the last decade. Presently available (2015) information indicates that stocked sturgeon are surviving and growing, and that wild and hatchery sturgeon are spawning in the wild. However, natural recruitment to age-1 and older has not been detected since systematic sampling began in 2005. Population models indicate the sensitivity of population growth to certain demographic variables, in particular early-life stage survival and perhaps adult fecundity. This report documents the existing population models for the pallid sturgeon, and the substantial quantities of information developed through the Pallid Sturgeon Population Assessment Program (PSPAP), the Habitat Assessment and Monitoring Program (HAMP), the Comprehensive Sturgeon Research Project (CSRP), range-wide genetics databases, and related research studies. The reference database compiled for the EA consists of over 190 peer-reviewed documents specifically related to pallid sturgeon and over 12,000 references on the Missouri River system and related species. Notwithstanding the large quantity of information available, the EA faces challenges in synthesizing the information into useful, quantitative models. In particular, critical demographic parameters for population models remain uncertain and the functional relationships between the two main categories of physical management action—changes in flow regime and reengineering channel form—and pallid sturgeon survival responses are obscure. In addition, there is an overarching uncertainty about how physical management actions interact with propagation management actions in view of evolving understanding of genetic structuring of the pallid sturgeon population. Synthesis efforts are also challenged by the fragmentation of information sources among projects and agencies; one objective of this report is to facilitate future assessments by providing documentation of what information is available and where.

Iowa, Kansas, Missouri, Montana, Nebraska, North D↗

USGS2016

Development of working hypotheses linking management of the Missouri River to population dynamics of Scaphirhynchus albus (pallid sturgeon)

This report documents a process of filtering of hypotheses that relate Missouri River Scaphirhynchus albus (pallid sturgeon) population dynamics to management actions including flow alterations, channel reconfigurations, and pallid sturgeon population augmentation. The filtering process was a partnership among U.S. Geological Survey, U.S. Army Corps of Engineers, and U.S. Fish and Wildlife Service to contribute to the Missouri River Recovery Management Plan process. The objective of the filtering process was to produce a set of hypotheses with high relevance to pallid sturgeon population dynamics and decision making on the Missouri River. The Missouri River Pallid Sturgeon Effects Analysis team filtered hundreds of potential hypotheses implicit in conceptual ecological models to develop a set of 40 candidate dominant hypotheses that were identified by experts as being important in pallid sturgeon population dynamics. Using a modified Delphi process and additional expert opinion, the team reduced this set of hypotheses to 23 working dominant hypotheses. We then matched the 23 hypotheses with management actions that could influence the biotic outcomes, resulting in as many as 176 potential effects between management actions and pallid sturgeon in the Missouri River. This number was consolidated to a candidate set of 53 working management hypotheses because some management actions applied to multiple life stages of the pallid sturgeon. We used an additional round of expert surveys to identify a set of 30 working management hypotheses. Finally, the set of working management hypotheses was filtered by the U.S. Army Corps of Engineers, Missouri River Recovery Program for actions that were within the agency’s authority and jurisdiction. This round resulted in a set of 21 hypotheses for initial modeling of linkages from management to pallid sturgeon population responses. The initial set of candidate hypotheses provides a useful starting point for quantitative modeling and adaptive management of the river and species. We anticipate that hypotheses will change from the set of working management hypotheses as adaptive management progresses. More importantly, hypotheses that have been filtered out of our multistep process are still being considered. These filtered hypotheses are archived and if existing hypotheses are determined to be inadequate to explain observed population dynamics, new hypotheses can be created or filtered hypotheses can be reinstated.

Missouri River Basin↗

USGS2015

Development of conceptual ecological models linking management of the Missouri River to pallid sturgeon population dynamics

This report documents the process of developing and refining conceptual ecological models (CEMs) for linking river management to pallid sturgeon ( Scaphirhynchus albus ) population dynamics in the Missouri River. The refined CEMs are being used in the Missouri River Pallid Sturgeon Effects Analysis to organize, document, and formalize an understanding of pallid sturgeon population responses to past and future management alternatives. The general form of the CEMs, represented by a population-level model and component life-stage models, was determined in workshops held in the summer of 2013. Subsequently, the Missouri River Pallid Sturgeon Effects Analysis team designed a general hierarchical structure for the component models, refined the graphical structure, and reconciled variation among the components and between models developed for the upper river (Upper Missouri & Yellowstone Rivers) and the lower river (Missouri River downstream from Gavins Point Dam). Importance scores attributed to the relations between primary biotic characteristics and survival were used to define a candidate set of working dominant hypotheses about pallid sturgeon population dynamics. These CEMs are intended to guide research and adaptive-management actions to benefit pallid sturgeon populations in the Missouri River.

Missouri River, Yellowstone River↗

USGS2014

Methylmercury-induced changes in gene transcription associated with neuroendocrine disruption in largemouth bass (Micropterus salmoides)

Methyl-mercury (MeHg) is a potent neuroendocrine disruptor that impairs reproductive processes in fish. The objectives of this study were to (1) characterize transcriptomic changes induced by MeHg exposure in the female largemouth bass (LMB) hypothalamus under controlled laboratory conditions, (2) investigate the health and reproductive impacts of MeHg exposure on male and female largemouth bass (LMB) in the natural environment, and (3) identify MeHg-associated gene expression patterns in whole brain of female LMB from MeHg-contaminated habitats. The laboratory experiment was a single injection of 2.5 μg MeHg/g body weight for 96 h exposure. The field survey compared river systems in Florida, USA with comparably lower concentrations of MeHg (Wekiva, Santa Fe, and St. Johns Rivers) in fish and one river system with LMB that contained elevated concentrations of MeHg (St. Marys River). Microarray analysis was used to quantify transcriptomic responses to MeHg exposure. Although fish at the high-MeHg site did not show overt health or reproductive impairment, there were MeHg-responsive genes and pathways identified in the laboratory study that were also altered in fish from the high-MeHg site relative to fish at the low-MeHg sites. Gene network analysis suggested that MeHg regulated the expression targets of neuropeptide receptor and steroid signaling, as well as structural components of the cell. Disease-associated gene networks related to MeHg exposure, based upon expression data, included cerebellum ataxia, movement disorders, and hypercalcemia. Gene responses in the CNS are consistent with the documented neurotoxicological and neuroendocrine disrupting effects of MeHg in vertebrates.

General and Comparative Endocrinology↗

USGS2014

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River: annual report 2011

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with cooperating research partners and in collaboration with the U.S. Army Corps of Engineers, Missouri River Recovery—Integrated Science Program. The research consists of several interdependent and complementary tasks that engage multiple disciplines. The research tasks in the 2011 scope of work emphasized understanding of reproductive migrations and spawning of adult sturgeon, and hatch and drift of larvae. These tasks were addressed in three hydrologically and geomorphologically distinct parts of the Missouri River Basin: the Lower Missouri River downstream from Gavins Point Dam, the Upper Missouri River downstream from Fort Peck Dam and including downstream reaches of the Milk River, and the Lower Yellowstone River. The research is designed to inform management decisions related to channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River, and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2011.

Missouri River↗

USGS2011

Characterization of plasma vitellogenin and sex hormone concentrations during the annual reproductive cycle of the endangered razorback sucker

Population declines of the endangered razorback sucker Xyrauchen texanus in the Colorado River basin have been attributed to predation by and competition with nonnative fishes, habitat alteration, and dam construction. The reproductive health and seasonal variation of the reproductive end points of razorback sucker populations are currently unknown. Using nonlethal methods, we characterized the plasma hormonal fluctuations of reproductively mature female and male razorback suckers over a 12-month period in a hatchery by measuring their vitellogenin (VTG) and three sex hormones: 17β-estradiol (E2), testosterone (T), and 11-ketotestosterone (KT). Fish were identified as reproductive or nonreproductive based on their body weight, VTG, and sex hormone profiles. In reproductive females, the E2 concentration increased in the fall and winter, and increases in T and VTG concentrations were generally associated with the spawning period. Mean T concentrations were consistently greater in reproductive females than in nonreproductive females, but this pattern was even more pronounced during the spawning period (spring). Consistently low T concentrations (<3 ng/mL) in adult females during the spawning period may indicate reproductive impairment. In reproductive males, spring increases in KT and T concentrations were associated with spawning; concentrations of E2 (<0.48 ng/mL) and VTG (<0.001 mg/mL) were low in males throughout the study. In addition, the E2 : KT ratio and T were the best metrics by which to distinguish female from male adult razorback suckers throughout the year. These metrics of reproductive health and condition may be particularly important to recovery efforts of razorback suckers given that the few remaining wild populations are located in a river where water quality and quantity issues are well documented. In addition to the size, age, and recruitment information currently considered in the recovery goals of this endangered species, reproductive end points could be included as recovery metrics with which to monitor seasonal trends and determine whether repatriated populations are cycling naturally.

North American Journal of Fisheries Management↗

USGS2007

Reproductive physiology of Missouri River gravid pallid sturgeon and shovelnose sturgeon during the 2005 and 2006 spawning seasons: Chapter C in Factors affecting the reproduction, recruitment, habitat, and population dynamics of pallid sturgeon and shovelnose sturgeon in the Missouri River

In a natural, unaltered river, the location and timing of sturgeon spawning will be dictated by the prevailing environmental conditions to which the sturgeon have adapted. A goal of the Comprehensive Sturgeon Research Program (CSRP; see chap. A) at the U.S. Geological Survey Columbia Environmental Research Center is to identify where, when, and under what conditions shovelnose sturgeon ( Scaphirhynchus platorynchus ) and pallid sturgeon ( S. albus ) spawn in the altered Missouri River so that those conditions necessary for spawning success can be defined. One approach to achieving this goal is to exploit what is known about fish reproductive physiology to develop and apply a suite of diagnostic indicators of readiness to spawn. In 2005 and 2006, gravid shovelnose sturgeon and a limited number of pallid sturgeon were fitted with transmitters and tracked on their spawning migration. A suite of physiological indicators of reproductive state such as reproductive hormones and oocyte development were measured. These same measurements were made on tissues collected from additional fish, presumably migrating to spawn, that were not tagged or tracked. The data presented here indicating the sturgeons’ readiness to spawn are to be evaluated together with their behavior and the environmental conditions. The U.S. Army Corps of Engineers (ACOE) Sturgeon Response to Flow Modification (SRFM; see chap. A) study, initiated in 2006, provides additional opportunities to experimentally evaluate the sturgeon reproductive response indicators relative to changes in flow. In this chapter, we report progress made on identifying and developing the physiological indicators and summarize 2 years’ worth of indicator data collected thus far.

Missouri River, Yellowstone River↗