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Lisa Lucas

Publications and source records attributed to Lisa Lucas.

7 recordsLinked to original sources
USGS2025

Designs for cyanobacterial harmful algal bloom monitoring in the Sacramento–San Joaquin Delta, California

Cyanobacterial harmful algal blooms (CHABs) are a growing concern in freshwater environments. These blooms can lead to degraded water quality, ecosystem disruptions, and public health threats due to the production of potent cyanotoxins. The Sacramento–San Joaquin Delta (California, USA; the Delta) has experienced CHABs since 1999, including CHABs that produce cyanotoxins at concentrations exceeding recreational advisory threshold levels. In response to the CHAB monitoring needs in the Delta, in 2024 a CHAB monitoring strategy for the Sacramento–San Joaquin Delta was released. The CHAB monitoring strategy recommended implementing a comprehensive monitoring program aligned with regional priorities, and this report responds directly to that recommendation. Building on the CHAB monitoring strategy, it describes three example monitoring designs that draw from past studies to address present needs. To develop designs, the report outlines key components and considerations for implementing a CHAB monitoring program in the Delta. It provides: background on monitoring and modeling approaches, an overview of current monitoring programs in the region, guidance for selecting monitoring locations, indicators, and sampling frequencies, and example designs to guide program planning and budgeting. The overarching goal of the report is to help agencies and stakeholders move from high-level recommendations to practical, actionable designs that are tailored to the Delta’s physical, anthropogenic, and ecological landscape.

ESS Open Archive↗
USGS2017

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period. Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

California↗
USGS2016

Bivalve grazing can shape phytoplankton communities

The ability of bivalve filter feeders to limit phytoplankton biomass in shallow waters is well-documented, but the role of bivalves in shaping phytoplankton communities is not. The coupled effect of bivalve grazing at the sediment-water interface and sinking of phytoplankton cells to that bottom filtration zone could influence the relative biomass of sinking (diatoms) and non-sinking phytoplankton. Simulations with a pseudo-2D numerical model showed that benthic filter feeding can interact with sinking to alter diatom:non-diatom ratios. Cases with the smallest proportion of diatom biomass were those with the fastest sinking speeds and strongest bivalve grazing rates. Hydrodynamics modulated the coupled sinking-grazing influence on phytoplankton communities. For example, in simulations with persistent stratification, the non-sinking forms accumulated in the surface layer away from bottom grazers while the sinking forms dropped out of the surface layer toward bottom grazers. Tidal-scale stratification also influenced vertical gradients of the two groups in opposite ways. The model was applied to Suisun Bay, a low-salinity habitat of the San Francisco Bay system that was transformed by the introduction of the exotic clam Potamocorbula amurensis . Simulation results for this Bay were similar to (but more muted than) those for generic habitats, indicating that P. amurensis grazing could have caused a disproportionate loss of diatoms after its introduction. Our model simulations suggest bivalve grazing affects both phytoplankton biomass and community composition in shallow waters. We view these results as hypotheses to be tested with experiments and more complex modeling approaches.

California↗
USGS2015

Timescale

No abstract available.

Encyclopedia of Earth Sciences Series↗
USGS2015

Age

No abstract available.

Encyclopedia of Earth Sciences Series↗
USGS2010

Implications of estuarine transport for water quality

In this chapter, some implications of estuarine transport for water quality are discussed. This is not an exhaustive review of all physical processes potentially important to water quality in estuaries. Rather, the focus is on (1) some fundamental relationships, concepts, and helpful idealizations (e.g., evolution equations for reactive scalars, transport time scales, scaling and non-dimensional numbers), (2) some common and often dominant physical processes in terms of their influence on estuarine water quality (e.g., stratification and turbulent mixing), and (3) some less prevalently discussed but probably widely important issues regarding high-frequency (i.e., intradaily) processes and their influence on water quality. Here, “water quality” refers to the full range of suspended constituents (or “scalars”, i.e., non-vector quantities) in an estuarine water column. These constituents may be dissolved or particulate, mineral, chemical, or biological, or they may represent physical properties of the water (e.g., temperature). The spatial distribution of a water quality constituent is influenced by the hydrodynamic environment in which it is suspended, but it may be additionally subject to motility, positive buoyancy, or negative buoyancy (e.g., some phytoplankton or zooplankton). Water quality scalars may be conservative (i.e., non-reactive, such as salt) or non-conservative (i.e., reactive and thereby potentially changing in concentration or form during transit; e.g., nitrogen, phosphorus, or phytoplankton). Hydrodynamic and transport processes are important not only because they “move stuff around” but also because, in the case of reactive scalars, those processes may expose the scalars to a range of environments, each of which may be associated with distinct rates of scalar transformation.

Book chapter↗