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Liam N. Schenk

Publications and source records attributed to Liam N. Schenk.

14 recordsLinked to original sources

2022 McKinney rain-on-wildfire event, dissolved oxygen sags, and a fish kill on the Klamath River, California

The longitudinal propagation of water-quality and ecological impairments in rivers during and after wildfires remain poorly understood. In Northern California, the 2022 McKinney Fire burned 243 km 2 of the Klamath National Forest, with 83% of the burned area classified as moderate to high severity. During the active wildfire, a high-intensity monsoonal rain event triggered sediment-laden flooding and runoff-initiated debris flows, causing extreme water-quality impairments and a 95 km fish kill zone along the main-stem Klamath River. This rain-on-wildfire event produced a flood wave that outpaced a sediment pulse, diminishing the dilution effect of the floodwaters. A network of high-frequency water-quality sensors recorded water-quality impairments that propagated 296 km downstream. Impairments at the nearest monitoring station, situated 71 km downstream from the fire perimeter, included dissolved oxygen sags to zero (anoxia) for 5.25 h, turbidity spikes exceeding 1000 FNU, a doubling of specific conductance from 175 to 415 µS/cm (at 25 °C), and pH anomalies of 0.5 units from 7.8 to 7.3. This novel rain-on-wildfire event triggered the first flush of fire-scar material during an active wildfire, resulting in water-quality impairments unprecedented in the historical monitoring data for the river spanning 2012 to 2022. This study provides new insights into the potential role of rain-on-wildfire events in generating extreme downstream water-quality and ecological impairments in a more fire-prone future.

California, Oregon↗

Total phosphorus and suspended-sediment concentrations and loads from two main tributaries to Upper Klamath Lake, Oregon, 2014–20

Total phosphorus (TP) and suspended-sediment concentrations (SSC) and loads were computed at two U.S. Geological Survey (USGS) streamgages in the upper Klamath River Basin on the Sprague (USGS site ID 11501000) and Williamson (USGS site ID 11502500) Rivers using high temporal resolution turbidity and streamflow data to develop surrogate regression models. Regression models were updated and validated for TP at the Williamson River site, and additional data improved a prior published TP model, increasing the coefficient of determination (R 2 ) from 0.73 to 0.88. A new TP regression model was developed for the Sprague River site using 2 years of data and showed promising results with an R 2 of 0.93. Suspended-sediment concentration (SSC) surrogate models were also updated at these sites using a longer period of record than the TP models and improved characterization of sediment transport conditions at these monitoring sites. Computations of TP loads were compared to the annual loading capacity dictated by the total maximum daily load (TMDL) for Upper Klamath Lake and showed that the combined TP load of the Williamson and Sprague Rivers approaches the annual loading capacity in water years with high annual streamflow. TP loads were also compared to loads computed by the Klamath Tribes using a long-term dataset and a regression and interpolation algorithm (RIA). The comparison showed that the two methods report similar annual loads, with the surrogate regression method generally reporting lower loads than the RIA, and the RIA annual loads falling within the range of uncertainty of the surrogate regression model results. Determining the effect of habitat and stream restoration on basin-scale TP and suspended-sediment loading is challenging using the surrogate regression method at these sites given the short period of record that TP and suspended-sediment load (SSL) data are available. However, long-term analysis by the Klamath Tribes in their larger monitoring network could provide insight into the impact of restoration at smaller spatial scales compared to the basin-wide assessment produced in this study.

Oregon↗

Reservoir evolution, downstream sediment transport, downstream channel change, and synthesis of geomorphic responses of Fall Creek and Middle Fork Willamette River to water years 2012–18 streambed drawdowns at Fall Creek Lake, Oregon

Executive Summary Chapter A. Introduction Fall Creek Dam impounds Fall Creek Lake, a 10-kilometer-long reservoir in western Oregon and is operated by the U.S. Army Corps of Engineers (USACE) primarily for flood-risk management (or flood control) in late autumn through early spring months, as well as for water quality, irrigation, recreation, and habitat in late spring through early autumn. Since 2011 (water year [WY] 2012), Fall Creek Lake has been temporarily drawn down each year to facilitate downstream passage of juvenile spring Chinook salmon ( Oncorhynchus tshawytscha ) through the 55-meter (m) high dam. This annual dam operation is temporary, typically lasting about 1–2 weeks from WY 2012 through 2020 (drawdown operations in WY 2022–24 have increased to more than 6 weeks). Drawdown of the reservoir results in lake levels being lowered to the elevation near the historical, pre-dam streambed. The annual streambed drawdowns of WY 2012–18 have improved fish passage and led the USACE to formally adopt streambed drawdowns as part of annual operations at Fall Creek Dam. However, temporarily lowering the lake to streambed creates free-flowing conditions in the reservoir that result in the erosion and episodic export of predominantly sand and finer-grained sediments (less than 2 millimeters [mm]) to the lower gravel-bed reaches of Fall Creek and the Middle Fork Willamette River. The introduction of large volumes of sand and finer-grain sediment into the dam-regulated reaches downstream from Fall Creek Dam prompted questions about the geomorphic responses to annual streambed drawdowns within Fall Creek Lake and downstream reaches along Fall Creek and the Middle Fork Willamette River. The U.S. Geological Survey (USGS) in partnership with USACE initiated a comprehensive geomorphic and sediment transport investigation to assess the coupled processes of reservoir erosion, sediment evacuation from Fall Creek Lake, and patterns of sediment transport and deposition in reaches downstream from the Fall Creek Dam that have resulted from annual streambed drawdowns. The purpose of this report is to systematically describe the processes of sediment erosion, transport, and deposition at Fall Creek Lake and geomorphic interactions between reaches upstream and downstream from Fall Creek Dam that relate to dam operations. Specifically, this report focuses on evaluating geomorphic responses to streambed drawdowns from WY 2012 through 2018 and placing drawdown-induced geomorphic responses within the broader context of physiographic and historical conditions and dam operations of Fall Creek and Middle Fork Willamette Rivers. Key objectives for this study were to characterize changes in reservoir morphology and substrate at Fall Creek Lake, describe the character and temporal pattern of sediment transport downstream from Fall Creek Dam, characterize geomorphic changes in channel reaches downstream from the Fall Creek Dam, and relate these data to the annual streambed drawdowns of WY 2012–18. This study uses multiple independent monitoring and measurement approaches to assess site, reach, and river-scale geomorphic responses to drawdowns to inform dam and reservoir management. Patterns and processes of reservoir evolution were assessed with geomorphic mapping and volumetric analyses of topography through comparison of multiple digital surface models (DSMs). Just downstream from Fall Creek Dam, analyses of sediment export from the reservoir focused on suspended sediment but also incorporated bedload analyses to assess sediment sizes. Geomorphic assessments downstream from the dam used reach-scale and site-scale approaches to document changes in channel morphology and substrate, including site measurements of sand and finer-grained sediment deposition and in-channel bed-material, volumetric change analyses from comparison of digital elevation models (DEMs), and repeat geomorphic mapping. Findings from this study inform river management and dam operations by providing an understanding of (1) coupled upstream-downstream geomorphic responses to the Fall Creek Lake streambed drawdowns, (2) geomorphic responses of Fall Creek Lake streambed drawdowns in comparison to drawdowns at other large dams, (3) controls on reservoir erosion and downstream geomorphic responses, and (4) implications for future hydrogeomorphic changes that may result from continued drawdowns and monitoring activities to assess those changes. Chapter B. Reservoir Morphology and Evolution Related to Dam Operations at Fall Creek Lake To understand the volume and distribution of sediment accumulation in Fall Creek Lake since dam closure in 1965, decadal-scale sedimentation patterns (spanning approximately 1965–2016) are evaluated using a combination of storage curve analyses and geomorphic mapping. Short-term (drawdown event-scale) patterns of erosion, sedimentation, and sediment export downstream are evaluated using a combination of geomorphic mapping and change detection analyses that quantify the distribution and total volume of sediment erosion and deposition within Fall Creek Lake. Geomorphic mapping of reservoir topography and analyses of historical datasets reveals four categories of landforms and sediment processes within Fall Creek Lake related to lake level operations: lacustrine sedimentation expressed in the reservoir floor, fluvial erosion and deposition within historical stream channels during streambed drawdowns, channel-like features created by erosion within the reservoir floor during streambed drawdowns, and erosion on reservoir hillslopes. Where the reservoir floor is mapped for this study as pelagic (deep water), deposition up to 3 meters (m) thick by lacustrine processes and burial of pre-dam topography with deposits thinning toward the edges of the valley floor and upstream areas of reservoir are observed. Despite over 50 years of sediment accumulation since dam construction, the main stream channels of Fall and Winberry Creeks (or reservoir thalwegs) through the reservoir are well defined, though their distinct morphology is likely influenced by a long history of recurring historical drawdowns to or near streambed since dam construction. Unregulated streamflow and sediment transport through the reservoir primarily are confined to these channels during the streambed drawdown periods. Erosional channel-like features created by drawdowns are carved through underlying, unconsolidated reservoir floor sediments and are most prominent in the lower reservoir below minimum conservation pool (the low pool elevation during winter flood season); sediment generated from the formation of these drawdown channels is more likely to be transported through and out of the reservoir than sediment deposits along the reservoir hillslopes at the valley margins that are separated from main channels by areas of low-gradient reservoir floor. Morphologic changes in the lower reservoir topography between January 2012 and November 2016 indicate overall net erosion of about 129,500 cubic meters (m 3 ). The most prominent geomorphic changes occurred along the main channels of Fall and Winberry Creeks near the Fall Creek Dam where incision, lateral migration, and slumping banks resulted in vertical and lateral adjustments to channel position, whereas most changes fell below the detectable limit on higher-elevation reservoir floor surfaces except where erosion occurred along features mapped as drawdown channels. Chapter C. Sediment Delivery from Fall Creek Lake and Transport through Downstream Reaches USGS implemented a sediment monitoring program in WY 2013–18 to evaluate the quantity and character of reservoir sediment exported from Fall Creek Lake during streambed drawdowns. Turbidity and suspended sediments were monitored annually autumn through spring to span the WY 2013–18 streambed drawdowns; however, unequal monitoring timeframes each year reduced the ability to compare results and factors affecting sediment export from the reservoir difficult between years. These data were originally measured to develop regressions and compute suspended-sediment loads (SSL). Bedload sediment monitoring from a cableway at the Fall Creek streamgage was completed in the autumn-winter of WY 2013 and 2017. The limited number of samples and presumed variability in sediment supply from the reservoir precluded construction of streamflow and bedload discharge relations to compute more than instantaneous bedload. Sand and finer-grained silts and clays were transported from the reservoir in suspension, though some coarser grains (up to 32 mm) were also mobilized and transported downstream from the dam as bedload. Observations of increased sediment transport downstream from Fall Creek Dam coincided with lake levels approaching about 3 m (10 feet [ft] or elevation 690 ft) above the streambed regulating outlets. Suspended-sediment loads computed for the full monitoring periods WY 2013–18 at the Fall Creek streamgage, located 1.4 kilometers (km) downstream from Fall Creek Dam, range from 54,700 metric tons (t) in WY 2013 to 13,900 t in WY 2018. Although the total annual SSL varied from year to year, the overall seasonal patterns of suspended sediment transport throughout each year were similar during monitoring in WY 2013-18. Suspended-sediment loads were low prior to the drawdown, then increased rapidly as lake levels lowered and approached the streambed. In the weeks following the drawdown period, as pool levels were increased, SSL remained slightly elevated above pre-drawdown levels but generally declined through the following winter and spring except during streamflow-driven pulses of suspended-sediment transport. WY 2013 had the greatest total computed SSL for each streambed drawdown and partial-year monitoring period. SSL computed for the partial-year period have generally decreased since WY 2013 and have varied by about 6,800 t with the exception of WY 2014. WY 2014 SSL reflects anomalously low sediment export due to low streamflows and freezing conditions that stabilized reservoir floor deposits. Bedload measurements in the short 1.4-km reach between Fall Creek Dam and the Fall Creek streamgage showed an inverse correlation between bedload transport rates and discharge, which probably reflects diminishing supply of coarse-sized sediment. Sand was more abundant (60–100 percent) than gravel in bedload samples confirming sand and finer-grained sediment dominated sediment evacuated from the reservoir during streambed drawdowns at Fall Creek Lake. Chapter D. Geomorphic Responses to Fall Creek Lake Streambed Drawdowns Downstream from Fall Creek Dam In the days, weeks, and months following streambed drawdown operations at Fall Creek Dam through WY 2018, sites downstream from the dam displayed a variety of geomorphic responses to reservoir sediment delivery within the main channel and overbank areas. Evaluation of streambed elevations at two streamgages located 1.4 km downstream from the dam on Fall Creek and 16.3 km downstream from the dam on the Middle Fork Willamette River indicated the effects of drawdown sediment on bed elevations were modest and transient. Repeat particle size measurements (October 2015 and September 2016) at five sites along Fall Creek and the Middle Fork Willamette River showed similar grain-sized distributions that do not reveal substantial deposition of fine-grained sediment related to the WY 2016 streambed drawdown. Altogether, these findings indicate that transport capacity in the main, low-flow channels of Fall Creek and Middle Fork Willamette River during WY 2012–18 was sufficient to mobilize and evacuate reservoir sediments from streambed drawdowns or other bank material and tributary sources. However, other monitoring for this study indicate low-velocity zones in off-channel areas are prime locations for sand and finer-grain sediment deposition. Patterns of overbank sediment accumulation indicate that the magnitude and timing of overbank deposition on bars and low-elevation floodplain varies with proximity to the dam, geomorphic setting, streamflows, and other factors. Sand and finer-grained reservoir sediments carried as suspended-sediment load in the reaches downstream from Fall Creek Dam were deposited in overbank areas as observed with clay-horizon markers during WY 2016–17. Overbank deposition quantified with Geomorphic Change Detection (GCD) software evaluated landform-scale patterns of erosion and deposition using repeat light detection and ranging (lidar) surveys at two sites in the Upper Fall Creek reach and one site in the Jasper reach for 3 years (2012–15) and one site in the Clearwater reach for 6 years (2009–15). Deposition thickness and spatial patterns from the GCD analysis were variable; some sites had dispersed but measurable deposition while at others, deposition was highly localized and exceeded 1 m in depth. Patterns of overbank deposition illustrate interactions among bar morphology, local hydraulics, and suspended-sediment transport dynamics that can create patches of highly localized deposition. The measured deposition at the two Fall Creek GCD sites likely resulted from reservoir sediments released from Fall Creek Lake during streambed drawdowns in WY 2016 and 2017 because the limited sediment inputs from bank material (geomorphically laterally stable reach) or tributaries (no significant tributaries) provided few other sediment sources. On the Middle Fork Willamette River, observed patterns of overbank deposition could reflect sediment sourced from upstream tributaries, bank erosion, or Fall Creek Lake streambed drawdown operations. Despite the introduction of several thousand tons of reservoir sediment delivered from the Fall Creek Lake streambed drawdowns to below-dam river corridors, reach-scale mapping of channel features downstream from Fall Creek Dam shows minimal evidence of changes in channel planform or landforms that can be attributed to a drawdowns in WY 2012–16. On Upper Fall Creek reach, widespread increases in gravel bars or other in-channel sediment did not result from the five streambed drawdowns. The main changes attributable to sediment releases from Fall Creek Lake were localized increases in vegetated bar area, particularly on channel margin areas where sand and finer-grain sediment was deposited and rapidly colonized by vegetation. The area of mapped secondary water features decreased between 2005 and 2016, but that may be due to lower discharges depicted in the 2016 aerial photographs and less mapped area of inundation. Primary changes along the Lower Fall Creek reach include a 6.4 percent decrease in area of secondary water features between 2011 and 2016, and a nearly twofold increase in the area of unvegetated bars. Immediately downstream from the Fall Creek confluence, there were negligible changes in the location and areas of vegetated bars and the main wetted channel between 2005 and 2016, and local increases in bar area cannot be attributed solely to deposition of reservoir sediments from Fall Creek Lake because (1) areas along the Middle Fork Willamette River just upstream from the Fall Creek confluence display similar type and magnitude of changes and (2) some of the increases at the confluence area pre-date the drawdowns. The cumulative effect of sediment releases from Fall Creek Lake streambed drawdowns from WY 2012 to 2016 on downstream channel planform and landforms are modest compared to the river-scale transformations and planform changes that occurred in the decades following dam construction. Chapter E. Discussion of Geomorphic Responses of Fall Creek and Middle Fork Willamette River to Streambed Drawdowns at Fall Creek Lake Multiple aspects of Fall Creek Dam infrastructure and operations exert first-order controls on the magnitudes of reservoir erosion that occur during the streambed drawdowns and ultimately determine the sediment delivery to downstream reaches. Key aspects of the dam and its operations that are most relevant to assessing geomorphic responses to streambed drawdowns include the (1) dam infrastructure, including configuration and size of regulating outlets and their proximity to the streambed which dictates the capacity and competence of the river to deliver sediment to downstream reaches and mode of sediment transport as suspended-sediment load or bedload; (2) frequency of historical drawdowns and long-term, year-round dam operations and lake level management, which partly dictate reservoir morphology and locations and magnitudes of readily erodible materials; (3) dam operations and hydroclimatic conditions during the streambed drawdown (including length of the drawdown and streamflows entering the reservoir), which directly control the timing, duration and magnitude of reservoir erosion and sediment evacuation; and (4) dam operations following the streambed drawdown operation that regulate streamflows (and thereby sediment transport conditions) downstream of Fall Creek Dam which primarily reflect interactions between hydroclimatic conditions and flood control operations. Patterns of sediment erosion and evacuation observed in this study at Fall Creek Lake from WY 2012–18 suggest that reservoir erosion during annual streambed drawdowns may remain similar or decrease in future years assuming (1) annual streambed drawdown operations are implemented in similar manner as the WY 2012–18 drawdowns (in terms of duration, late autumn or early winter implementation, rate of pool-level lowering to reach streambed, and other factors), (2) streambed drawdowns coincide with similar conditions as were observed WY 2012–18 (similar sediment yield into reservoir, low reservoir inflows, limited precipitation, moderate air temperature), and (3) no major geomorphic changes in the main reservoir channels of Fall and Winberry Creeks occur (for example, channel avulsion). Under such conditions, it is hypothesized that the stream channel within the reservoir would achieve a quasi-equilibrium state with respect to annual influx and export of sediment and aided by the substantial amount of in-channel bedrock, will remain laterally stable without erosion across reservoir deposits. Patterns of sediment transport measured at the Fall Creek streamgage downstream from Fall Creek Dam provide insight into the potential effects of future streambed drawdowns at Fall Creek Lake. Analyses of suspended sediment measured in WY 2013–18 show a major reduction in suspended-sediment loads between WY 2013 and later years, indicating streamflows transporting sediment through the reservoir to downstream reaches during streambed drawdowns have become supply limited. The 6-year suspended-sediment monitoring and sampling program is insufficient to make predictions about future sediment transport conditions because of uneven monitoring periods and varying controls on reservoir sediment erosion. It is likely that future suspended-sediment loads will be variable but similar to those observed in WY 2015–18 if operational, climatic, and geomorphological factors remain similar to those monitored WY 2015–18. Suspended-sediment loads downstream from Fall Creek Lake will likely remain highest when regulating outlets are fully open and Fall Creek is free flowing with the reservoir fully drained with little to no residual pool. Over time, it is possible that the suspended-sediment loads would reflect mobilization of reservoir sediment deposited in the previous year rather than erosion of sediment deposited years or decades earlier. Bedload is likely to remain a small fraction of the total sediment load evacuated from the reservoir and is relatively modest compared with pre-dam bedload transport rates because most coarse sediment remains trapped by the dam. If sediment releases from Fall Creek Lake and ensuing streamflow conditions follow a similar pattern in the future as was assessed in this study spanning WY 2012–18, near-term geomorphic adjustments downstream of the dam are expected to be modest. Barring major operational, climatic, and geomorphological changes, local site-scale deposition on bars, overbank areas, or off-channel features that persists several months after the streambed drawdown will likely continue to be highly variable, ranging from negligible to several centimeters of deposition. At the landform-scale, low velocity areas nearest to Fall Creek Dam will likely continue to undergo rapid deposition immediately during and after a streambed drawdown event, similar to patterns observed for WY 2012–18. Some of the sediment entering these off-channel features and margin areas may be temporarily stored, then later remobilized and dispersed farther downstream. But if newly deposited sediment persists through the following spring, there is a greater likelihood that local vegetation will establish, reinforce deposited material, and trap sediment during later drawdowns. The reach-scale geomorphic changes may become more apparent if (1) streambed drawdowns continued for several decades, and geomorphic changes were measured at decadal scales or (2) the amount of sediment introduced to downstream reaches substantially increased and (or) sediment transport capacity decreased. The continued streamflow regulation of Fall Creek Dam after sediment releases provides an opportunity to strategically manage streamflows during and after the streambed drawdowns to minimize downstream sediment impacts and ensure other operational thresholds are satisfied. This study provides a comprehensive foundation of datasets and geomorphic analyses to inform dam operations at Fall Creek Lake, monitor sediment transport downstream, and consider operational schemes for future drawdowns. The datasets from this study also provide baselines of sediment transport and geomorphic conditions to assess future changes in reservoir and downstream environments. Future monitoring could be tailored to address specific questions regarding the long-term geomorphic effects of streambed drawdowns on fluvial habitats, flood hazards, cultural resources, or downstream water quality. Future monitoring activities could focus on the relevant geomorphic processes and spatial domains within the three categories used for this study: (1) reservoir erosion and net sediment evacuation, (2) sediment delivery to downstream reaches, including magnitude and temporal pattern of sediment transport, and (3) geomorphic responses of downstream reaches to sediment delivery. Specifically, high priority future monitoring activities could include: Repeat topographic or photographic surveys in the reservoir to characterize changes occurring within individual drawdowns, to quantify sediment export, to determine temporal changes in reservoir storage, and to identify locations of erosion and deposition. Continuous, year-round turbidity monitoring supplemented with suspended-sediment measurements at a streamflow-gaging station immediately downstream from the dam to quantify sediment export. Repeat geomorphic monitoring, mapping, or modeling in downstream reaches to track changes in channel and over bank features using a combination of site- and reach-scale monitoring approaches. This could support assessments of sediment deposition and ensuing vegetation encroachment on flood hazards and habitats and examine how sediment transport and depositional processes may be affected by different sediment supply, streamflow, or dam management scenarios.

Oregon↗

Examining the effect of physicochemical and meteorological variables on water quality indicators of harmful algal blooms in a shallow hypereutrophic lake using machine learning techniques

Two independent machine learning techniques, boosted regression trees and artificial neural networks, were used to examine the physicochemical and meteorological variables that affect the seasonal growth and decline of harmful algal blooms (HABs) in a shallow, hypereutrophic lake in southern Oregon. High temporal resolution data collected at four monitoring locations were aggregated into daily timesteps to create two response variables: (1) daily maximum pH (pH max ), representing HAB growth, and (2) daily minimum dissolved oxygen (DO min ), representing HAB decline. Predictors included meteorological and physical data, estimates of external phosphorus loading, and previous-year average nutrient concentrations, and excluded HAB biomass and internal phosphorus loading. The predictors that captured seasonal changes in both pH max and DO min were temperature, inflows, lake-surface elevation, and external phosphorus loading, while short-term changes were captured by measures of stratification, temperature, and wind speed. The pH max models had similar fits with leave-one-year-out cross-validation (LOYO-CV) R 2 values of 0.2–0.43 (median = 0.40). The DO min models for the deeper locations had LOYO-CV R 2 values of 0.27–0.43 compared to 0.1–0.25 for the shallower locations. Model performance was affected by variability due to patchiness of HABs, measurement uncertainty, and advection.

Water↗

Sediment transport, turbidity, and dissolved oxygen responses to annual streambed drawdowns for downstream fish passage in a flood control reservoir

Sediment transport, turbidity, and dissolved oxygen were evaluated during six consecutive water years (2013–2018) of drawdowns of a flood control reservoir in the upper Willamette Valley, Oregon, USA. The drawdowns were conducted to allow volitional passage of endangered juvenile chinook salmon through the dam's regulating outlets by lowering the reservoir elevation to a point where the historical streambed was exposed and transported water and sediment through the reservoir dam. Sediment loads during the drawdown were highest in the first year of monitoring, with a computed value of 40,200 metric tons over a 5-day drawdown, followed by 5 years of lower sediment loads and lower sediment transport rates, suggesting that much of the stored sediment within the reservoir thalweg was transported out of the reservoir in the early years of the consecutive drawdowns. Suspended sediment concentrations (SSC) computed using turbidity and streamflow data resulted in maximum SSC at the onset of the drawdowns, with the highest computed values occurring during the water year 2017 drawdown at 17,500 mg/L (turbidity = 2,990 FNU), and average drawdown SSC values ranging from 654 to 3,950 mg/L for the six years of monitoring. Computed SSC were on the lower range of concentrations that could be harmful to out-migrating juvenile salmon published in other studies. High amounts of particulate organic matter and sand-sized material in drawdown SSC samples affected relations between turbidity and SSC, requiring the use of multiple surrogate regression models over short time frames. Dissolved oxygen minimum values were recorded in two of the monitoring years, with a minimum value of 0.71 and 3.4 mg/L recorded at the onset of the drawdowns in water years 2016 and 2018, respectively. Dissolved oxygen values below 4 mg/L lasted for 1 h, suggesting a rapidly expressed chemical oxygen demand. The response of suspended sediment loads and SSC highlight the site-specific nature of reservoir drawdowns, and the need for evaluation of expected sediment responses for drawdowns being considered at other locations.

Oregon↗

Effects of harmful algal blooms and associated water-quality on endangered Lost River and shortnose suckers

Anthropogenic eutrophication contributes to harmful blooms of cyanobacteria in freshwater ecosystems worldwide. In Upper Klamath Lake, Oregon, massive blooms of Aphanizomenon flos-aquae and smaller blooms of other cyanobacteria are associated with cyanotoxins, hypoxia, high pH, high concentrations of ammonia, and potentially hypercapnia. Recovery of the endangered Lost River sucker Deltistes luxatus and shortnose sucker Chasmistes brevirostris in Upper Klamath Lake is obstructed by low survival in the juvenile life stage. Water quality associated with the harmful algal blooms and their decomposition (crashes) is often singled out as the primary cause of juvenile sucker mortality. We investigated this general hypothesis with a review of relevant literature and data from decades of monitoring in Upper Klamath Lake. Microcystins, hepatotoxins produced by some cyanobacteria, are unlikely to be directly lethal to suckers; potential effects of other cyanotoxins that are present in the lake warrant investigation. Dissolved-oxygen saturation declined following bloom crashes, but was infrequently low enough for long enough in Upper Klamath Lake to cause direct sucker mortality. Hypercapnia could potentially reach lethal concentrations in the fall and winter, but did not appear to be associated with the summer algal blooms. pH was highest during peaks in cyanobacteria growth, but infrequently reached directly lethal levels (> 10.3). However, pH frequently reached an observed sub-lethal effect level for juvenile suckers (10.0). Un-ionized ammonia rarely exceeded even the lowest effect level measured for suckers. Rather than act as a direct cause of large-scale mortality, the available evidence suggests that water quality associated with massive blooms of cyanobacteria in Upper Klamath Lake contributes to chronic stress for juvenile suckers and may increase mortality due to other factors.

Oregon↗

Differentiating sediment sources using sediment fingerprinting techniques, in the Sprague River Basin, South-Central Oregon

Identifying sources of sediment to streams in the Sprague River Basin, in south-central Oregon, is important for restoration efforts that are focused on reducing sediment erosion and transport. Reducing sediment loads in these streams also contributes to compliance with the total maximum daily load reduction requirements for total phosphorus in this basin. In the Sprague River Basin, phosphorus occurs in surface waters in both dissolved phase and particulate phase, and particulate phosphorus is readily transported in streams on fine-grained suspended sediments, which eventually deposit in Upper Klamath Lake. The lake has seasonal blooms of cyanobacteria that require phosphorus for growth and degrade water-quality conditions, violating State water-quality standards and creating conditions that are stressful to two endangered suckers that reside in the lake. Identifying sources of sediment to the Sprague River could help inform restoration actions by determining the principal locations in the basin contributing fine sediment to the river. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, conducted a proof-of-concept study to determine if sediment fingerprinting can differentiate sources of bank erosion by source material, basin, river reach, and soil horizon. The sediment fingerprinting approach uses properties of streambank and streambed sediment to differentiate between multiple sediment sources by determining a composite signature, or fingerprint. The composite fingerprint is established by combining fingerprint properties from laboratory results of elemental analysis, stable isotopes, and total carbon and nitrogen. The methods for differentiating sediment samples for this study include grouping bank and bed samples by basin, river reach, and soil horizon, and using non-parametric statistics to determine which fingerprint properties could be used to differentiate the sample groups. Results indicate that fingerprint properties differentiated source material, river reach, and basin, and were more successful at differentiating samples grouped by geographic location (basin and reach) compared to source material. Source material (banks, bed, levees) were differentiated with three fingerprint properties—Antimony (Sb), copper (Cu), and manganese (Mn). The basin category (South Fork and main-stem Sprague River) differentiated the South Fork and main stem with stable nitrogen isotopes (δ 15 N), aluminum (Al), silicon (Si), and vanadium (V). Specific river reaches within the study area were differentiated with 11 different fingerprint properties. These results can be used for apportionment studies using suspended sediment samples and mixing models to determine sediment source contributions within the basin.

Oregon↗

Refining the Baseline Sediment Budget for the Klamath River, California

Four dams in the Klamath River Hydroelectric Project (KHP) in Oregon and California (Figure 1) are currently scheduled to be removed over a period of a few weeks or months, beginning in January 2021. The Klamath dam removal will be the largest in the world by almost all measures, and is an unprecedented opportunity to advance science of river responses to such events. The KHP contains approximately 10-12 million cubic meters of mostly fine sediment and model estimates suggest approximately 1/3-2/3 of this volume is expected to be eroded from reservoirs. Much of this sediment is expected to be eventually transported by the river to, or through, the Klamath River Estuary, a distance of more than 300 kilometers. To improve the success of restoration activities following dam removal, agencies must understand the baseline conditions for biological, chemical, and physical processes, prior to the removal. We expect large changes in water quality (turbidity, suspended sediment, dissolved oxygen, temperature, and algal toxins) and in fish habitat in the Hydroelectric Reach and the main-stem of the Klamath River to the ocean. For example, modeled sediment concentrations in the Klamath River during dam removal were estimated exceed 10,000 – 15,000 mg/L, depending on streamflows, location, and the dam removal process, and to remain > 100 – 1000 mg/L for months at a time. Final time to achieve background concentrations post dam removal may take over two years (Reclamation, 2011). Plans to assess many of these changes post-dam removal are still being formulated.

California, Oregon↗

Monitoring the effect of deep drawdowns of a flood control reservoir on sediment transport and dissolved oxygen, Fall Creek Lake, Oregon

Annual reservoir drawdowns at Fall Creek Lake, Oregon, have occurred for eight consecutive years from December 2012 to November 2019. The annual drawdowns are the result of the 2008 Biological Opinion of the US Army Corps of Engineers (USACE) Willamette Valley Project operations, which directed the USACE to carry out interim operational measures that would provide volitional downstream passage for endangered species act (ESA)-listed Chinook salmon. At Fall Creek Lake, the USACE modifies its operations by lowering the reservoir elevation to 690-ft, approximately 40 feet below the normal winter low-pool elevation. This action results in a runof-river scenario through the dam allowing juvenile Chinook salmon to safely pass through the regulating outlets. Monitoring of juvenile Chinook salmon in screw traps at the outlet of the dam has shown variable timing in out-migration associated with reservoir elevation, and that most of the juvenile fish exited the reservoir when the pool elevation passed 700-ft (Taylor and others, 2015). The annual drawdown has therefore been effective in providing safe downstream fish passage and has also had the collateral effect of transporting large quantities of suspended sediment to the downstream reaches of Fall Creek and the Middle Fork Willamette River. The US Geological Survey (USGS) has calculated time-series of suspended sediment concentrations (SSC) and suspended sediment loads (SSL) before, during, and after the drawdowns for six of the last nine drawdown years (water years [WY] 2013-2018), which have lasted between 5-14 days. The transport and deposition of sediment from the drawdowns has affected side-channel habitat below the dam by depositing large quantities of sand-size material resulting in streambed aggradation in several locations. The results from the USGS monitoring effort have provided important information to USACE on how the modification of their operations has affected sediment transport in the river reaches below the dam.

Oregon↗

Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California, March 2012–March 2015

The U.S. Geological Survey and Bureau of Reclamation collected water-quality data from March 2012 to March 2015 at locations in the Lost River and Klamath River Basins, Oregon, in an effort to characterize water quality and compute a nutrient budget for the Bureau of Reclamation Klamath Reclamation Project. The study described in this report resulted in the following significant findings: Total phosphorus (TP), total nitrogen (TN), 5-day biochemical oxygen demand (BOD5), and 5-day carbonaceous biochemical oxygen demand (CBOD5) loads, calculated using the U.S. Geological Survey LOADEST software package at the upper and lower boundaries of the Klamath Reclamation Project, indicated higher loads at the upper boundary on the southern end of Upper Klamath Lake upstream of the Bureau of Reclamation A Canal diversion compared to the lower boundary on the Klamath River downstream of Keno Dam. Accounting for the diversion of loads down A Canal, BOD5 and CBOD5 loads decreased between these two sites during irrigation season, indicating that the Klamath Reclamation Project is not a large source of oxygen-demanding material and that much of the oxygen demand at study site FMT, the northern boundary of the study area, has been expressed by the time the same water passes through site KRK, the southern boundary of the study area. An evaluation of the nutrient balance along the Klamath River flowpath from sites FMT to KRK indicated that, during irrigation season in the 3 years of the study period (March 2012–March 2015), more loads of TP, TN, BOD5, and CBOD5 were being diverted from the Klamath River than were being added to the Klamath River from the combination of Klamath Straits Drain, regulated point sources along the Klamath River, and internal loading from the bottom sediments in the river. By contrast, during non-irrigation seasons, more loads were added to the Klamath River than were diverted through Ady and North Canals, and this difference primarily was due to additional loads to the river from the Lost River Diversion Channel. At the Lost River Diversion Channel, BOD5 loads were higher during irrigation season than non-irrigation season in all three study years owing to the high concentrations of oxygen-demanding cyanobacterial biomass from the seasonal blooms of Aphanizomenon flos-aquae in the Klamath River and Upper Klamath Lake. The difference between the two seasons was particularly large in years 2 and 3, when the low flows of these two drought years resulted in smaller nonirrigation period loads than in year 1. CBOD5 loads also were higher during irrigation season in years 2 and 3 than during non-irrigation season, indicating that the largest oxygen demand was coming from senescence of Aphanizomenon flos-aquae cells that are present in the Klamath River during the summer. However, during irrigation season in year 1, CBOD5 loads were lower than in the non-irrigation season, which may indicate that at times high concentrations of ammonia or cellular organic nitrogen leaving Upper Klamath Lake contribute a large nitrogenous oxygen demand as well. The smallest loads were computed for the farthest upstream sites in the Lost River Basin, suggesting that the upper Lost River Basin does not contribute substantial loads of TP, TN, BOD5, and CBOD5 to the Klamath Reclamation Project. Median concentrations of BOD5 and CBOD5 were lowest among the upper Lost River Basin sites and highest at site PPD (however, this comparison is based on only four samples collected at site PPD over the 3-year study). Median concentrations of BOD5 and CBOD5 also were elevated at sites KSDH (6.60 and 4.70 milligrams per liter [mg/L], respectively) and KSD97 (4.47 and 3.45 mg/L, respectively). The highest maximum BOD5 and CBOD5 concentrations were reported at the Lost River Diversion Channel (39.0 and 26.5 mg/L, respectively) when water was flowing from the Klamath River toward the Klamath Reclamation Project, and site FMT (25.0 and 23.9 mg/L, respectively), the study site at the southern end of Upper Klamath Lake. Carbonaceous oxygen demand, as represented by CBOD5, typically dominated the composition of the samples at all sites. The highest concentrations of dissolved organic carbon were present at sites KSDH (the headworks of Klamath Straits Drain) and KSD97 (Klamath Straits drain before it enters the Klamath River), and PPD (outlet of Tule Lake). Median concentrations of TN and TP at the upper Lost River Basin sites in years 1 and 2 were variable, but site MCRV showed a smaller range of values in those years compared to the other upper Lost River Basins sites, and an overall lower median concentration during irrigation seasons in years 1 and 2, suggesting that Gerber Reservoir does not contribute high concentrations of nutrients to the Lost River during irrigation season. Total Maximum Daily Load (TMDL) load allocations for TP and TN in Klamath Straits Drain were exceeded in all three study years. BOD5 load allocations were exceeded in years 1 and 2, but not year 3. TMDL load allocations for TP were exceeded in the Lost River Diversion Channel for all 3 years. Load allocations for TN were exceeded in year 1, but not in years 2 and 3. BOD5 loads were less than the TMDL load allocation for all three study years. The dearth of samples collected at the Klamath Straits Drain just downstream of the Lower Klamath National Wildlife Refuge did not allow for direct assessment of the Klamath Straits Drain acting as a nutrient source or sink. TP, TN, BOD5, and CBOD5 loads estimated during the study period likely were smaller than long-term average conditions because of persistent drought conditions in the Upper Klamath Basin. The study results, therefore, fail to characterize loads from the Klamath Reclamation Project to the Klamath River that could be present in typical years, and suggest the need for load assessments during average or aboveaverage streamflow years.

California, Oregon↗

Evaluating external nutrient and suspended-sediment loads to Upper Klamath Lake, Oregon, using surrogate regressions with real-time turbidity and acoustic backscatter data

Executive Summary Suspended-sediment and total phosphorus loads were computed for two sites in the Upper Klamath Basin on the Wood and Williamson Rivers, the two main tributaries to Upper Klamath Lake. High temporal resolution turbidity and acoustic backscatter data were used to develop surrogate regression models to compute instantaneous concentrations and loads on these rivers. Regression models for the Williamson River site showed strong correlations of turbidity with total phosphorus and suspended-sediment concentrations (adjusted coefficients of determination [Adj R 2 ]=0.73 and 0.95, respectively). Regression models for the Wood River site had relatively poor, although statistically significant, relations of turbidity with total phosphorus, and turbidity and acoustic backscatter with suspended sediment concentration, with high prediction uncertainty. Total phosphorus loads for the partial 2014 water year (excluding October and November 2013) were 39 and 28 metric tons for the Williamson and Wood Rivers, respectively. These values are within the low range of phosphorus loads computed for these rivers from prior studies using water-quality data collected by the Klamath Tribes. The 2014 partial year total phosphorus loads on the Williamson and Wood Rivers are assumed to be biased low because of the absence of data from the first 2 months of water year 2014, and the drought conditions that were prevalent during that water year. Therefore, total phosphorus and suspended-sediment loads in this report should be considered as representative of a low-water year for the two study sites. Comparing loads from the Williamson and Wood River monitoring sites for November 2013–September 2014 shows that the Williamson and Sprague Rivers combined, as measured at the Williamson River site, contributed substantially more suspended sediment to Upper Klamath Lake than the Wood River, with 4,360 and 1,450 metric tons measured, respectively. Surrogate techniques have proven useful at the two study sites, particularly in using turbidity to compute suspended-sediment concentrations in the Williamson River. This proof-of-concept effort for computing total phosphorus concentrations using turbidity at the Williamson and Wood River sites also has shown that with additional samples over a wide range of flow regimes, high-temporal-resolution total phosphorus loads can be estimated on a daily, monthly, and annual basis, along with uncertainties for total phosphorus and suspended-sediment concentrations computed using regression models. Sediment-corrected backscatter at the Wood River has potential for estimating suspended-sediment loads from the Wood River Valley as well, with additional analysis of the variable streamflow measured at that site. Suspended-sediment and total phosphorus loads with a high level of temporal resolution will be useful to water managers, restoration practitioners, and scientists in the Upper Klamath Basin working toward the common goal of decreasing nutrient and sediment loads in Upper Klamath Lake.

Oregon↗

Comparison of mercury mass loading in streams to atmospheric deposition in watersheds of Western North America: Evidence for non-atmospheric mercury sources

Annual stream loads of mercury (Hg) and inputs of wet and dry atmospheric Hg deposition to the landscape were investigated in watersheds of the Western United States and the Canadian-Alaskan Arctic. Mercury concentration and discharge data from flow gauging stations were used to compute annual mass loads with regression models. Measured wet and modeled dry deposition were compared to annual stream loads to compute ratios of Hg stream load to total Hg atmospheric deposition. Watershed land uses or cover included mining, undeveloped, urbanized, and mixed. Of 27 watersheds that were investigated, 15 had some degree of mining, either of Hg or precious metals (gold or silver), where Hg was used in the amalgamation process. Stream loads in excess of annual Hg atmospheric deposition (ratio > 1) were observed in watersheds containing Hg mines and in relatively small and medium-sized watersheds with gold or silver mines, however, larger watersheds containing gold or silver mines, some of which also contain large dams that trap sediment, were sometimes associated with lower load ratios (< 0.2). In the non-Arctic regions, watersheds with natural vegetation tended to have low ratios of stream load to Hg deposition (< 0.1), whereas urbanized areas had higher ratios (0.34–1.0) because of impervious surfaces. This indicated that, in ecosystems with natural vegetation, Hg is retained in the soil and may be transported subsequently to streams as a result of erosion or in association with dissolved organic carbon. Arctic watersheds (Mackenzie and Yukon Rivers) had a relatively elevated ratio of stream load to atmospheric deposition (0.27 and 0.74), possibly because of melting glaciers or permafrost releasing previously stored Hg to the streams. Overall, our research highlights the important role of watershed characteristics in determining whether a landscape is a net source of Hg or a net sink of atmospheric Hg.

Science of the Total Environment↗

Assessment of suspended-sediment transport, bedload, and dissolved oxygen during a short-term drawdown of Fall Creek Lake, Oregon, winter 2012-13

The drawdown of Fall Creek Lake resulted in the net transport of approximately 50,300 tons of sediment from the lake during a 6-day drawdown operation, based on computed daily values of suspended-sediment load downstream of Fall Creek Dam and the two main tributaries to Fall Creek Lake. A suspended-sediment budget calculated for 72 days of the study period indicates that as a result of drawdown operations, there was approximately 16,300 tons of sediment deposition within the reaches of Fall Creek and the Middle Fork Willamette River between Fall Creek Dam and the streamgage on the Middle Fork Willamette River at Jasper, Oregon. Bedload samples collected at the station downstream of Fall Creek Dam during the drawdown were primarily composed of medium to fine sands and accounted for an average of 11 percent of the total instantaneous sediment load (also termed sediment discharge) during sample collection. Monitoring of dissolved oxygen at the station downstream of Fall Creek Dam showed an initial decrease in dissolved oxygen concurrent with the sediment release over the span of 5 hours, though the extent of dissolved oxygen depletion is unknown because of extreme and rapid fouling of the probe by the large amount of sediment in transport. Dissolved oxygen returned to background levels downstream of Fall Creek Dam on December 18, 2012, approximately 1 day after the end of the drawdown operation.

Oregon↗

Water-quality data from Upper Klamath and Agency Lakes, Oregon, 2009-10

The U.S. Geological Survey Upper Klamath Lake water-quality monitoring program collected data from multiparameter continuous water-quality monitors, weekly water-quality samples, and meteorological stations during 2009 and 2010 from May through November each year. The results of these measurements and sample analyses, as well as quality-control data for the water-quality samples, are presented in this report for 14 sites on Upper Klamath Lake and 2 sites on Agency Lake. These 2 years of data demonstrate a contrast in the seasonal bloom of the dominant cyanobacterium, Aphanizomenon flos-aquae , that can be related to differences in the measured water quality and meteorological variables. Some of the significant findings from 2009 and 2010 are listed below. * Both 2009 and 2010 were characterized by two cyanobacteria blooms, but the blooms differed in timing and intensity. The first bloom in 2009 peaked in late June and at higher chlorophyll a concentrations at most sites than the first bloom in 2010, which peaked in mid-July. A major decline in the first 2009 bloom occurred in late July and was followed by a second bloom that peaked at most sites in mid-August and persisted through September. The decline of the weaker first bloom in 2010 occurred in early August and was followed by a more substantial second bloom that peaked between late August and early September at most sites. * Dissolved oxygen minima associated with bloom declines occurred approximately 2 weeks earlier in 2009 (mid-July) than in 2010 (early August). pH maxima associated with rapid bloom growth occurred in late June and again in mid-August in 2009 and in mid-July and late August in 2010. * In both years, the maxima for total phosphorus and total nitrogen concentrations coincided with the chlorophyll a maximum. The maxima for dissolved nutrient concentrations (orthophosphate, ammonia, and nitrite plus nitrate) coincided with the declines of the first blooms. * Total particulate carbon, total particulate nitrogen, and total particulate phosphorus concentrations were measured in 2009 only. The ratios of carbon to phosphorus and nitrogen to phosphorus in particulates were the highest of the entire season during the rapid growth phase of the first bloom and were the lowest of the season during the decline of the first bloom. These ratios increased with the onset of the second bloom in that year, but to a lesser degree. * Meteorological data show that 2009 was warmer (particularly in June and July), less windy, and more humid early in the season than 2010. The difference in water temperatures reflected the difference in air temperatures in that the lakes were warmer in 2009 than in 2010 starting in early May, when the sensors were deployed, through most of June. Water temperature peaked at a higher value in 2009, and there were more clear days in June 2009 than in June 2010.

Oregon↗