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Leslie Hsu

Publications and source records attributed to Leslie Hsu.

At least 19 recordsLinked to original sources

The path to FAIR research models: Lessons learned

Numerical modeling of Earth surface processes emerged as an important scientific tool in the late 1960s to mid-1970s, driven by the development of finite element methods in computer science. These advancements, initially applied in civil engineering, enabled scientists to simulate complex geological phenomena. At that time, models were often only described in publications, access was limited to researchers with direct connections to the developers, and the code was rarely documented for reuse, limiting their application beyond the original research context. The FAIR principles (Findability, Accessibility, Interoperability, and Reusability) as applied to data began to take shape in the 21st century with the rise of open science, digital repositories, and standardized data sharing frameworks. In the late 2010s, grassroots movements began to apply some of the FAIRness goals to numerical models. Subsequently, more formalized FAIR model principles were developed that addressed the specific needs of the scientific modeling community, resulting in the formulation of the FAIR principles for research software (FAIR4RS). In this study, we examine the development and implementation of strategies by two geoscience research infrastructures – the CSDMS (Community Surface Dynamics Modeling System) Model Repository and the U.S. Geological Survey Model Catalog – to enhance the FAIRness of models guided by FAIR4RS. Some of the development and implementation efforts described predate the formalization of FAIR and FAIR4RS principles, making this an ongoing and adaptive process. We evaluate the temporal progression towards increased FAIR4RS alignment across three phases of research infrastructure development: prototype, refinement, and growth and iteration. Although certain principles were more straightforward to implement early in prototypes of the catalog infrastructures, others required broader community collaboration during refinement, and some continue to pose practical challenges in the growth and iteration phase. By tracing these dynamics, our aim is to provide insights that can guide other modeling initiatives in effectively adopting FAIR4RS principles within their communities.

Geoscientific Model Development

Community for Data Integration 2020 project report

The U.S. Geological Survey Community for Data Integration annually funds small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 12 projects funded in fiscal year 2020, outlining their goals, activities, and accomplishments.

Open-File Report

State of the data: Assessing the FAIRness of USGS data

In response to recent shifts towards open science that emphasize transparency, reproducibility, and access to research data, the US Geological Survey (USGS) conducted a study to assess the degree to which USGS data assets meet the FAIR data principles (Findable, Accessible, Interoperable, and Reusable). The USGS designed and applied a methodology for quantitative analysis of FAIR characteristics. A new rubric was derived from a crosswalk of existing FAIR evaluation frameworks and customized for the USGS. The rubric, consisting of 62 yes/no questions, was applied to 392 metadata records of USGS data products published between 1987 and 2022. Results were analyzed to show which FAIR characteristics were most and least present in the metadata and how these scores changed after the implementation of data policy requirements in 2016. Aggregated scores showed specific areas of strength and needed improvements. The greatest increases in FAIR scores over time were for elements that were required by new data policies, especially in the ‘Findable’ category. Based on the results, this paper presents strategies to further improve USGS alignment with FAIR. The suggested strategies are organized in four key areas: USGS data repository characteristics, training and communities of practice, data management policy considerations, and metadata standards, tools, and best practices.

Data Science Journal

Community for data integration 2019 project report

The U.S. Geological Survey Community for Data Integration annually supports small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 14 projects supported in fiscal year 2019 and outlines their goals, activities, and accomplishments. Proposals in 2019 were encouraged to address the optional disciplinary theme of biosurveillance of emerging invasive species and health threats.

Open-File Report

Community for data integration 2020 annual report

The Community for Data Integration is a community of practice whose purpose is to advance the data integration capabilities of the U.S. Geological Survey. In fiscal year 2020, the Community for Data Integration held 11 monthly forums, facilitated 13 collaboration areas, and supported 13 projects. The activities supported the broad U.S. Geological Survey priority of producing building blocks for doing integrated predictive science. Specifically, the activities supported tools and methods for findable, accessible, interoperable, and reusable (FAIR) data and wildland fire and water prediction. Through these efforts, community members were informed of new and emerging technologies and data topics that helped them accomplish their professional responsibilities.

Open-File Report

Paths to computational fluency for natural resource educators, researchers, and managers

Natural resource management and supporting research teams need computational fluency in the data and model-rich 21st century. Computational fluency describes the ability of practitioners and scientists to conduct research and represent natural systems within the computer's environment. Advancement in information synthesis for natural resource management requires more sophisticated computational approaches, as well as reproducible, reusable, extensible, and transferable methods. Despite this importance, many new and current natural resource practitioners lack computational fluency and no common set of recommended resources and practices exist for learning these skills. Broadly, attaining computational fluency entails moving beyond the simple use of computers to applying sound computational principles and methods and including computational experts (such as computer scientists) on research teams. Our path for computational fluency includes using open-source tools when possible; reproducible data management, statistics, and modeling; understanding and applying the benefits of basic computer programming to carry out more complex procedures; tracking code with version control; working in controlled computer environments; and using advanced computing resources.

Natural Resource Modelling

U.S. Geological Survey landscape science strategy 2020–2030

Across our Nation, multiple Federal, State, Tribal, and local governments are working with stakeholders and landowners to restore, conserve, and manage lands and resources to benefit fish, wildlife, and people. One of the largest Federal efforts is led by the U.S. Department of the Interior (DOI), with multiple DOI agencies working to conserve and manage public lands, resources, and cultural heritage for the benefit and enjoyment of current and future generations. As a science provider within the DOI, the U.S. Geological Survey (USGS) has an important role in developing actionable science products that can inform decision making on public lands and across all of our Nation’s landscapes. Our landscapes and resources are undergoing continual change from a complex and interacting suite of stressors that include traditional and nontraditional land uses, a changing climate, a dynamic economy, and a culturally diverse and ever-changing society. Landscape science seeks to understand how the physical, biological, and social components of ecosystems and landscapes interact with each other and are affected by these stressors across local to global scales. The USGS has developed this landscape science strategy to focus and strengthen the agency’s efforts to inform critical conservation, restoration, and management decisions for American landscapes. The strategy directly supports the overarching 21st-century science strategy of the USGS and expands our perspective and focus on partnerships, including with internal, external, traditional, and nontraditional partners. The vision for USGS landscape science is to integrate multiple disciplines and approaches to create and deliver relevant, timely, and scientifically sound products that enable our partners to make informed decisions about how to manage complex interacting natural and human systems across changing American landscapes. This strategy seeks to leverage the expertise, data, analytical capacity, and tools of the agency and to strengthen integration of science efforts across programs and scales. A cornerstone of the strategy is working closely with landowners and resource managers to identify the science that is needed to inform management actions, and then working collaboratively with those same partners to coproduce science and data products that are timely, practical, and useful for their decision making. Many individual efforts within the USGS already embrace landscape science ideas and practices. With the development of this strategy, we are seeking to build on these efforts and to focus agency attention and expertise on expanding, connecting, and institutionalizing core practices and approaches for landscape science that produces actionable science products and tools that decision makers can use to help conserve and manage American landscapes.

Circular

Community for Data Integration 2019 annual report

The Community for Data Integration is a community of practice whose purpose is to advance the U.S. Geological Survey’s data integration capabilities. In fiscal year 2019, the Community for Data Integration held 9 monthly forums, facilitated 11 collaboration areas, held several workshops and training events, and funded 14 projects. The activities supported the U.S. Geological Survey priorities of enabling integrated predictive science, producing FAIR (Findable, Accessible, Interoperable, Reusable) data, building modular and reusable tools, building authoritative national datasets for hazards or assets, and developing tools and methods for biosurveillance of emerging invasive species and health threats. Through these efforts, community members were informed of new and emerging technologies and data topics that helped them in their professional responsibilities.

Open-File Report

U.S. Geological Survey Community for Data Integration 2019 Workshop Proceedings—From big data to smart data

The U.S. Geological Survey (USGS) Community for Data Integration (CDI) Workshop was held during June 3–7, 2019, at Center Green in Boulder, Colo. The theme of the workshop was “From Big Data to Smart Data” with the purpose of bringing together the community to discuss current topics, shared challenges, and steps forward to advance twenty-first century science at the USGS. The workshop agenda was driven by the needs of the CDI with topics highlighting current resources and technologies that could help attendees in their daily work. Workshop-session categories included enabling integrated science, computing in the cloud, advancing data management, releasing and preserving science outputs, and improving usability and communication. These proceedings provide documentation of the plenary talks, topical-session content and notes, posters, live demonstrations, and attendee comments from the 2019 CDI Workshop.

Open-File Report

USGS enterprise tools for efficient and effective management of science data

The Science Data Management Branch (SDM) of the U.S. Geological Survey (USGS) provides data management expertise and leadership and develops guidance and tools to support the USGS in providing the nation with reliable scientific information on the basis of which to describe the Earth. The SDM suite of tools supports the USGS Data Management Lifecycle by facilitating quality assurance, description, curation, and publishing of the Bureau's scientific data. The SDM suite of tools includes the USGS Data Management Website, USGS Science Data Catalog, Digital Object Identifier Tool, ScienceBase, ScienceBase Data Release Tool, Metadata Wizard, and Online Metadata Editor.

Fact Sheet

Ecological forecasting—21st century science for 21st century management

Natural resource managers are coping with rapid changes in both environmental conditions and ecosystems. Enabled by recent advances in data collection and assimilation, short-term ecological forecasting may be a powerful tool to help resource managers anticipate impending near-term changes in ecosystem conditions or dynamics. Managers may use the information in forecasts to minimize the adverse effects of ecological stressors and optimize the effectiveness of management actions. To explore the potential for ecological forecasting to enhance natural resource management, the U.S. Geological Survey (USGS) convened a workshop titled "Building Capacity for Applied Short-Term Ecological Forecasting" on May 29—31, 2019, with participants from several Federal agencies, including the Bureau of Land Management, the U.S. Fish and Wildlife Service, the National Park Service, and the National Oceanic and Atmospheric Administration as well as all mission areas within the USGS. Participants broadly agreed that short-term ecological forecasting—on the order of days to years into the future—has tremendous potential to improve the quality and timeliness of information available to guide resource management decisions. Participants considered how ecological forecasting could directly affect their agency missions and specified numerous critical tools for addressing natural resource management concerns in the 21st century that could be enhanced by ecological forecasting. Given this breadth of possible applications for forecast products, participants developed a repeatable framework for evaluating potential value of a forecast product for enhancing resource management. Applying that process to a large list of forecast ideas that were developed in a brainstorming session, participants identified a small set of promising forecast products that illustrate the value of ecological forecasting for informing resource management. Workshop outcomes also include insights about important likely obstacles and next steps. In particular, reliable production and delivery of operational ecological forecasts will require a sustained commitment by research agencies, in partnership with resource management agencies, to maintain and improve forecasting tools and capabilities.

Open-File Report

Community for data integration 2018 funded project report

The U.S. Geological Survey Community for Data Integration annually funds small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 10 projects funded in fiscal year 2018, outlining their goals, activities, and accomplishments.

Open-File Report

Community for Data Integration 2018 annual report

The Community for Data Integration (CDI) is a community of practice whose purpose is to build the U.S. Geological Survey knowledge base in data integration. This annual report describes the various presentations, activities, and outcomes of the CDI monthly forums, working groups, trainings, and other CDI-sponsored events in fiscal year 2018. The report also describes the objectives of the 10 CDI-funded projects for the year. The CDI had a topical theme for fiscal year 2018—Risk assessment and hazards vulnerability in support of integrated predictive science capacity. This report describes how the community coordinated its activities around this theme.

Open-File Report

Measuring sustainability of seed-funded Earth science informatics projects

Short term funding is a common funding model for informatics projects. Funders are interested in maximizing the sustainability and accessibility of the outputs, but there are no commonly accepted practices to do so in the Earth sciences informatics field. We constructed and applied a framework for sustainability drawing from other disciplines that have more published work in sustainability of projects. This framework had seven sustainability influences (outputs modified, code repository used, champion present, workforce stability, support from other organizations, collaboration/partnership, and integration with policy), and three ways of defining sustainability (at the individual-, organization-, and community-level). Using this framework, we evaluated outputs of projects funded by the U.S. Geological Survey’s Community for Data Integration (CDI). We found that the various outputs are widely accessible, but not necessarily sustained or maintained. Projects with most of the sustainability influences often became institutionalized, and met a required need of the community. Even if proposed outputs were not delivered or sustained, knowledge of lessons learned could be spread to build community capacity in a topic, which is another type of sustainability. We conclude by summarizing lessons for individuals applying for short-term funding, and for organizations running programs that provide such funding, in terms of maximizing sustainability of their projects.

PLoS ONE

Community for Data Integration fiscal year 2017 funded project report

The U.S. Geological Survey Community for Data Integration annually funds small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 11 projects funded in fiscal year 2017, outlining their goals, activities, and outputs.

Open-File Report

Community for Data Integration 2017 annual report

The Community for Data Integration (CDI) is a group that helps members grow their expertise on all aspects of working with scientific data. The CDI’s activities advance data and information integration capabilities in the U.S. Geological Survey and in the wider Earth and biological sciences. This annual report describes the presentations, activities, collaboration areas, workshop, and other CDI-sponsored events in fiscal year 2017. The report also describes the objectives of the 11 CDI-funded projects in fiscal year 2017. The report shows how the CDI activities fulfill the strategic objective of the U.S. Geological Survey’s Core Science Systems Mission Area to develop a workplace model for interdisciplinary science.

Open-File Report

U.S. Geological Survey Community for Data Integration 2017 Workshop Proceedings

Executive Summary The U.S. Geological Survey (USGS) Community for Data Integration (CDI) Workshop was held May 16–19, 2017 at the Denver Federal Center. There were 183 in-person attendees and 35 virtual attendees over four days. The theme of the workshop was “Enabling Integrated Science,” with the purpose of bringing together the community to discuss current topics, shared challenges, and steps forward to advance integrated science at the USGS. The CDI welcomed several keynote speakers, including Bill Werkheiser, USGS Acting Director; Kevin T. Gallagher, USGS Associate Director of the Core Science Systems Mission Area; Bruce Caron, Earth Science Information Partners Community Architect; and Tim Quinn, Chief of the USGS Office of Enterprise Information. Their presentations focused on the importance of collaborative, cross-disciplinary, and open science and the role of the CDI in identifying and supporting new opportunities in these areas for the USGS and its partners. In addition to the stated theme, the workshop agenda was driven by the needs of the CDI, with topics highlighting current resources and technologies that could help attendees in their daily work. Topical sessions were proposed by CDI members and included subjects such as data citation, information technology architecture, legacy data, real-time data, and many more. Plenary speakers from the community talked about USGS activities in data science, elevation and hydrography data integration, advanced scientific computing solutions, cloud computing, data-management training, and data-sharing agreements. Two panels addressed the role of the CDI in enabling integrated science and examples of CDI-supported projects in action. Breakout discussions focused on the workshop theme of “Enabling Integrated Science” and covered five topics: Data and Data Integration, Modeling, Computing Capacity, Science Data Integration, and User Needs and Experience. Sessions on each topic identified actions that could bring the USGS and the broader Earth science community closer to the goal of making integrated science commonplace. The breakouts produced recommendations with the broad themes of improving communication and connections across the USGS, reducing duplication and increasing knowledge transfer, increasing training and testbed opportunities to learn and experiment, and creating community-supported standards to enable better integration and interoperability. The DataBlast poster and live demonstration session showcased 36 projects from around the CDI and included recent CDI-funded projects as well as other USGS and partner initiatives that were related to data and software integration and discovery. Importantly, the CDI workshop provided a forum for scientists, technologists, data and resource managers, program managers, and others to convene face to face to discuss common methods, interests, challenges, and solutions related to scientific data and technologies. As a result of this rare convergence, new connections were made across disciplines, backgrounds, and geographical locations, seeding future activities and collaborations. Sharing of ideas from all attendees was encouraged through the use of a mobile application to collect real-time questions and feedback from the audience The primary outcomes of the workshop are the recommendations from the breakout sessions titled “Roadmap Discussions on Enabling Integrated Science” and from the topical sessions detailed in these proceedings. These sessions, as well as the plenary discussions, identified new areas of collaboration and learning that the CDI will facilitate, such as data science, software development, scientific modeling practices, and user needs and experience. The CDI will build on the results of the workshop to guide its future topics, events, and funding opportunities to support an integrated science capacity for the USGS.

Open-File Report