Geology topics

Kevin D. Lafferty

Publications and source records attributed to Kevin D. Lafferty.

At least 55 records · Page 3Linked to original sources

USGS2020

A global parasite conservation plan

Found throughout the tree of life and in every ecosystem, parasites are some of the most diverse, ecologically important animals on Earth—but in almost all cases, the least protected by wildlife or ecosystem conservation efforts. For decades, ecologists have been calling for research to understand parasites' important ecological role, and increasingly, to protect as many species from extinction as possible. However, most conservationists still work within priority systems for funding and effort that exclude or ignore parasites, or treat parasites as an obstacle to be overcome. Our working group identified 12 goals for the next decade that could advance parasite biodiversity conservation through an ambitious mix of research, advocacy, and management.

Biological Conservation↗

USGS2020

Tradeoffs with growth limit host range in complex life-cycle helminths

Parasitic worms with complex life cycles have several developmental stages, with each stage creating opportunities to infect additional host species. Using a dataset for 973 species of trophically transmitted acanthocephalans, cestodes, and nematodes, we confirmed that worms with longer life cycles (i.e. more successive hosts) infect a greater diversity of host species and taxa (after controlling for study effort). Generalism at the stage level was highest for ‘middle’ life stages, the second and third intermediate hosts of long life cycles. By simulating life cycles in real food webs, we found that middle stages had more potential host species to infect, suggesting that opportunity constrains generalism. However, parasites usually infected fewer host species than expected from simulated cycles, suggesting generalism also has costs. There was no tradeoff in generalism from one stage to the next, but worms spent less time growing and developing in stages where they infected more taxonomically diverse hosts. Our results demonstrate that life cycle complexity favors high generalism, and host use across life stages is determined by both ecological opportunity and life history tradeoffs.

The American Naturalist↗

USGS2020

A science business model for answering important questions

Perhaps the biggest question in science is how to do better science. Many ecologists, including this book’s editors and authors, have succeeded under the current science “business model” and, from our perspective, the status quo works well enough. But science business models are under increased scrutiny. For instance, since 2012, at least nine papers have critiqued government-sponsored biomedical research, with the most-suggested (self-serving) solution being to spend more government funds on science (Pickett et al. 2015). To get more funding, scientists might consider first improving their return on investment. To increase return on investment, ecologists (and scientists in general) could rethink training programs, reproducibility, funding distribution, synthesis, publication models, and evaluation metrics.

Book chapter↗

USGS2019

Towards common ground in the biodiversity–disease debate

The disease ecology community has struggled to come to consensus on whether biodiversity reduces or increases infectious disease risk, a question that directly affects policy decisions for biodiversity conservation and public health. Here, we summarize the primary points of contention regarding biodiversity–disease relationships and suggest that vector-borne, generalist wildlife and zoonotic pathogens are the types of parasites most likely to be affected by changes to biodiversity. One synthesis on this topic revealed a positive correlation between biodiversity and human disease burden across countries, but as biodiversity changed over time within these countries, this correlation became weaker and more variable. Another synthesis—a meta-analysis of generally smaller-scale experimental and field studies—revealed a negative correlation between biodiversity and infectious diseases (a dilution effect) in various host taxa. These results raise the question of whether biodiversity–disease relationships are more negative at smaller spatial scales. If so, biodiversity conservation at the appropriate scales might prevent wildlife and zoonotic diseases from increasing in prevalence or becoming problematic (general proactive approaches). Further, protecting natural areas from human incursion should reduce zoonotic disease spillover. By contrast, for some infectious diseases, managing particular species or habitats and targeted biomedical approaches (targeted reactive approaches) might outperform biodiversity conservation as a tool for disease control. Importantly, biodiversity conservation and management need to be considered alongside other disease management options. These suggested guiding principles should provide common ground that can enhance scientific and policy clarity for those interested in simultaneously improving wildlife and human health.

Nature Ecology & Evolution↗

USGS2019

Parasitic nematodes of marine fishes from Palmyra Atoll, East Indo-Pacific, including a new species of Spinitectus (Nematoda, Cystidicolidae)

Here, we present the results of a taxonomic survey of the nematodes parasitizing fishes from the lagoon flats of Palmyra Atoll, Eastern Indo-Pacific. We performed quantitative parasitological surveys of 653 individual fish from each of the 44 species using the intertidal sand flats that border the atoll’s lagoon. We provide morphological descriptions, prevalence, and mean intensities of the recovered seven species of adult nematode ( Pulchrascaris chiloscyllii , Capillariidae gen. sp., Cucullanus bourdini, Cucullanus oceaniensis, Pseudascarophis sp., Spinitectus (Paraspinitectus) palmyraensis sp. nov., Philometra pellucida ) and three larval stages ( Pulchrascaris sp., Hysterothylacium sp., Cucullanus sp.). We recorded: Pulchrascaris chiloscyllii from Carcharhinus melanopterus ; Capillariidae gen. sp. from Chaetodon lunula, Lutjanus fulvus, and Ellochelon vaigiensis ; Cucullanus bourdin i from Arothron hispidus ; Cucullanus oceaniensis from Abudefduf sordidus ; Pseudascarophis sp. from Chaetodon auriga, Chaetodon lunula, and Mulloidichthys flavolineatus ; Spinitectus ( Paraspinitectus ) palmyraensis sp. nov. from Albula glossodonta ; Philometra pellucida from Arothron hispidus ; and three larval forms, Pulchrascaris sp. from Acanthurus triostegus, Acanthurus xanthopterus, Rhinecanthus aculeatus, Platybelone argalus, Carangoides ferdau, Carangoides orthogrammus, Caranx ignobilis, Caranx melampygus, Caranx papuensis, Chaetodon auriga, Chanos chanos, Amblygobius phalaena, Asterropteryx semipunctata, Valencienea sexguttata, Kyphosus cinerascens, Lutjanus fulvus, Lutjanus monostigma, Ellochelon vaigiensis, Mulloidichthys flavolineatus, Upeneus taeniopterus, Gymnothorax pictus, Abudefduf septemfasciatus, Abudefduf sordidus, and Stegastes nigricans ; Hysterothylacium sp. type MD from Acanthurus triostegus, Carangoides ferdau, Chaetodon lunula, Chanos chanos, Kyphosus cinerascens, Abudefduf sordidus, and Arothron hispidus ; and Cucullanus sp. from Caranx ignobilis . Spinitectus ( Paraspinitectus ) palmyraensis sp. nov. (Cystidicolidae) is described from the intestine of roundjaw bonefish Albula glossodonta . All the nematode species reported in this study represent new geographical records. We discuss how our survey findings compare to other areas of the Indo-Pacific, and the way the relatively numerical dominance of trophically transmitted larval stages likely reflect the intact food web of Palmyra Atoll, which includes a large biomass of large-bodied top predator sharks and ray-finned fishes.

ZooKeys↗

USGS2019

Precision mapping of snail habitat provides a powerful indicator of human schistosomiasis transmission

Recently, the World Health Organization recognized that efforts to interrupt schistosomiasis transmission through mass drug administration have been ineffective in some regions; one of their new recommended strategies for global schistosomiasis control emphasizes targeting the freshwater snails that transmit schistosome parasites. We sought to identify robust indicators that would enable precision targeting of these snails. At the site of the world’s largest recorded schistosomiasis epidemic—the Lower Senegal River Basin in Senegal—intensive sampling revealed positive relationships between intermediate host snails (abundance, density, and prevalence) and human urogenital schistosomiasis reinfection (prevalence and intensity in schoolchildren after drug administration). However, we also found that snail distributions were so patchy in space and time that obtaining useful data required effort that exceeds what is feasible in standard monitoring and control campaigns. Instead, we identified several environmental proxies that were more effective than snail variables for predicting human infection: the area covered by suitable snail habitat (i.e., floating, nonemergent vegetation), the percent cover by suitable snail habitat, and size of the water contact area. Unlike snail surveys, which require hundreds of person-hours per site to conduct, habitat coverage and site area can be quickly estimated with drone or satellite imagery. This, in turn, makes possible large-scale, high-resolution estimation of human urogenital schistosomiasis risk to support targeting of both mass drug administration and snail control efforts.

PNAS↗

USGS2019

Southern California and range‐wide raccoon gastrointestinal helminth database

Local and global measurements of parasite prevalence and abundance are critical for understanding the dynamics that underlie the diversity, distribution, and evolution of infectious diseases. Here, we present a data set of gut helminths found in (1) raccoons throughout their range, based on primary literature from 1925–2017 and (2) raccoons in Santa Barbara County, California, USA surveyed from 2012 to 2015. The range‐wide data set has 1,256 parasite entries from 217 literature sources across three continents and 32 states in the USA. This data set includes a list of all recorded raccoon gut helminths (n = 100) and their presence and prevalence in surveyed raccoon populations. The Santa Barbara data set includes gut helminth data from 182 raccoons from one Southern California County. In addition to the presence and abundance data for 13 parasite species, this data set includes measurements of 7,465 individual raccoon roundworms (Baylisascaris procyonis). For both range‐wide and Santa Barbara data sets, we include information on parasite site of infection in host, sampling method, and sample size. We also provide geographic coordinates for infected raccoon populations (range‐wide database) and individuals (Santa Barbara). In the associated metadata, we include sampling methods and summary figures for both the range‐wide and Santa Barbara raccoon gut helminth records. There are no copyright or proprietary restrictions for research and/or teaching purposes. S. B. Weinstein and J. C. Van Wert contributed equally to this manuscript and are shared first authors.

California↗

USGS2019

Infection at an ecotone: Cross‐system foraging increases satellite parasites but decreases core parasites in raccoons

Ecotones can increase free-living species richness, but little is known about how parasites respond to ecotones. Here we use parasite communities in raccoons (Procyon lotor) to test the hypothesis that parasite communities can be divided into core and satellite species, each with fundamentally different responses to ecotones. We used published parasite surveys to classify parasites as common core or rare satellite species and then surveyed raccoons in coastal California to examine how proximity to two aquatic ecotones altered parasite communities. Raccoons near ecotones had more satellite and fewer core parasite species. Specifically, the marine ecotone increased parasite diversity by adding satellite species to a persistent core community, whereas the freshwater ecotone shifted the community from core to satellite species without a net change in parasite richness. We hypothesize that increased parasite richness at the marine ecotone resulted from increased diet diversity, but that raccoons were sinks for some parasites. Increased exposure to rare parasites at ecotones has implications for wildlife health and provides insight into observed associations between ecotones and emerging disease.

California↗

USGS2019

Species insurance trumps spatial insurance in stabilizing biomass of a marine macroalgal metacommunity

Because natural ecosystems are complex, it is difficult to predict how their variability scales across space and levels of organization. The species‐insurance hypothesis predicts that asynchronous dynamics among species should reduce variability when biomass is aggregated either from local species populations to local multispecies communities, or from metapopulations to metacommunities. Similarly, the spatial‐insurance hypothesis predicts that asynchronous spatial dynamics among either local populations or local communities should stabilize metapopulation biomass and metacommunity biomass, respectively. In combination, both species and spatial insurance reduce variation in metacommunity biomass over time, yet these insurances are rarely considered together in natural systems. We partitioned the extent that species insurance and spatial insurance reduced the annual variation in macroalgal biomass in a southern California kelp forest. We quantified variability and synchrony at two levels of organization (population and community) and two spatial scales (local plots and region) and quantified the strength of species and spatial insurance by comparing observed variability and synchrony in aggregate biomass to null models of independent species or spatial dynamics based on cyclic‐shift permutation. Spatial insurance was weak, presumably because large‐scale oceanographic processes in the study region led to high spatial synchrony at both population‐ and community‐level biomass. Species insurance was stronger due to asynchronous dynamics among the metapopulations of a few common species. In particular, a regional decline in the dominant understory kelp species Pterygophora californica was compensated for by the rise of three subdominant species. These compensatory dynamics were associated with positive values of the Pacific Decadal Oscillation, indicating that differential species tolerances to warmer temperature and nutrient‐poor conditions may underlie species insurance in this system. Our results illustrate how species insurance can stabilize aggregate community properties in natural ecosystems where environmental conditions vary over broad spatial scales.

Ecology↗

USGS2019

A strong colonizer rules the trematode guild in an intertidal snail host

We examined the extent to which supply‐side, niche, and competition theories and concepts help explain a trematode community in which one species comprises 87% of the trematode individuals, and the remaining 15 species each have <3%. We collected and dissected the common and wide‐ranging snail host Heleobia australis over four seasons from three distinct habitats from the intertidal area of the Bahía Blanca estuary, Argentina. Inside a snail, trematodes interact with each other with outcomes that depend on facilitation, competition, and preemption, suggesting that dominant species should be common. The abundant trematode species, Microphallus simillimus , is a weak competitor , but has life‐history traits and strategies associated with higher colonization ability that could increase its probability of invading the host first, allowing it to preempt the rare species. Rather than segregate by habitat, trematode species aggregated in pans during the summer where dominant trematode species often excluded subordinate ones. Despite losses to competition, and a lack of niche partitioning, M. simillimus ruled this species‐rich trematode guild through strong recruitment and (potentially) preemption. Therefore, extremely skewed species abundance distributions, like this one, can derive from extremely skewed colonization abilities.

Bahia Blanca Estuary↗

USGS2019

Parasitic copepods (Crustacea, Hexanauplia) on fishes from the lagoon flats of Palmyra Atoll, Central Pacific

We surveyed copepods parasitic on the fishes at Palmyra, a remote atoll in the Central Indo-Pacific faunal region. In total, we collected 849 individual fish, representing 44 species, from the intertidal lagoon flats at Palmyra and recovered 17 parasitic copepod species. The parasitic copepods were: Orbitacolax williamsi on Mulloidichthys flavolineatus ; Anuretes serratus on Acanthurus xanthopterus ; Caligus confusus on Carangoides ferdau , Carangoides orthogrammus , Caranx ignobilis , Caranx melampygus , and Caranx papuensis ; Caligus kapuhili on Chaetodon auriga and Chaetodon lunula ; Caligus laticaudus on Rhinecanthus aculeatus , Pseudobalistes flavimarginatus , M. flavolineatus , Upeneus taeniopterus , Chrysiptera glauca , and Epinephalus merra ; Caligus mutabilis on Lutjanus fulvus and Lutjanus monostigma ; Caligus randalli on C. ignobilis ; Caligus sp. on L. fulvus ; Caritus serratus on Chanos chanos ; Lepeophtheirus lewisi on A. xanthopterus ; Lepeophtheirus uluus on C. ignobilis ; Dissonus similis on Arothron hispidus ; Nemesis sp. on Carcharhinus melanopterus ; Hatschekia longiabdominalis on A. hispidus ; Hatschekia bicaudata on Chaetodon auriga and Chaetodon lunula ; Kroyeria longicauda on C. melanopterus and Lernanthropus sp. on Kyphosus cinerascens . All copepod species reported here have been previously reported from the Indo-Pacific but represent new geographical records for Palmyra, demonstrating large-scale parasite dispersion strategies.

ZooKeys↗

USGS2019

Fish culling reduces tapeworm burden in Arctic charr by increasing parasite mortality rather than by reducing density‐dependent transmission

Two common Dibothriocephalus (formerly Diphyllobothrium ) tapeworm species were significantly reduced by experimental culling of their fish host Arctic charr ( Salvelinus alpinus ) in a subarctic lake. Between 1984 and 1991, funnel traps were used to cull ~35 metric tons of Arctic charr, reducing charr density by ~80%. As charr densities decreased, tapeworm prevalence and then intensity also declined over the following three decades, with D. dendriticus (formerly dendriticum ) responding faster than D. ditremus (formerly ditremum ). The two main hypotheses for how culling a host can decrease parasitism are reductions in parasite transmission due to reduced host density and reductions in parasite survival through increases in host mortality rates. We found little evidence that charr density was the main driver for reduced parasite transmission. Instead, decreased survivorship in charr, initially, through fishing‐induced changes in charr age structure, and later through increased predation rates by brown trout, led to increased parasite mortality. Although brown trout, which increased significantly after fish culling, are also hosts, they are often too big for the final host birds to eat, thus becoming parasite sinks. Synthesis and applications . Fish populations with heavy parasite burdens constitute a management problem. Our results show how fish culling can indirectly reduce transmitted parasites through increased parasite mortality. Managing overcrowded fish populations by culling can produce two desirable outcomes: an increase in fish growth rates and reduced parasite burdens.

Journal of Applied Ecology↗

USGS2019

Ecosystem function and services of aquatic predators in the Anthropocene

Arguments for the need to conserve aquatic predator (AP) populations often focuses on the ecological and socio-economic roles they play. Here, we summarize the diverse ecosystem functions and services connected to APs, including regulating food webs, cycling nutrients, engineering habitat, transmitting diseases/parasites, mediating ecological invasions, effecting climate, supporting fisheries, generating tourism, and providing bioinspiration. In some cases, human-driven declines and increases in AP populations have altered these ecosystem functions and services. We present a Social Ecological Framework for supporting adaptive management decisions involving APs in response to social and environmental change. We also identify outstanding questions to guide future research on the ecological functions and ecosystem services of APs in a changing world

Trends in Ecology and Evolution↗

USGS2019

The response of kelp forest organisms to spatial and temporal variation in wave energy in the California Channel Islands

This report describes the spatial and temporal variation in wave height for the study system in the broader context of the Southern California Bight. A new, low-cost pressure sensor was engineered for measuring wave height and period. These sensors were placed for several months at 32 sites around the Channel Islands where long-term kelp forest monitoring occurs. Matching sensor data with CDIP wave hindcasts made it possible to correct the CDIP model hindcast to make it applicable to nearshore sites in this region. With these corrections, annual wave energy was estimated for 88 sites where long term biotic monitoring had been conducted in the study region. These data were analyzed to assess the extent that wave energy affects species abundances and, in particular, how a reduction in wave height would affect various species.

California↗

USGS2019

Synopsis of research programs that can provide baseline and monitoring information for offshore energy activities in the Pacific region: Seabird and marine mammal surveys in the Pacific region

We assembled and tabulated information about marine bird and mammal research and monitoring programs that could provide data needed to support environmental risk assessments. This included identifying ongoing or completed research programs that contain information on species and habitats sensitive to offshore energy activities and that could provide baseline and monitoring data to understand and mitigate potential impacts of offshore energy development in the Southern California Planning Area, Washington-Oregon Planning Area, and the Hawaiian OCS of the Bureau of Ocean Energy Management (BOEM). When available, we also included information regarding programs in Alaska, but the catalog for Alaska is not comprehensive. We included programs that assessed the distribution, abundance, or biology of marine birds (seabirds, waterbirds, or sea ducks) and marine mammals (cetaceans, pinnipeds, and sea otters), some of which are protected species under the Endangered Species Act (ESA of 1973) or the Marine Mammal Protection Act (MMPA of 1972). We canvassed data providers with spreadsheet or web-based survey forms. The marine bird survey returned information on research and monitoring efforts for 28 parameters across 46 species from 36 entities. The marine mammal survey returned information on research and monitoring efforts for 24 parameters across 22 marine mammal species from 22 entities. We tabulated the parameters by species to show which parameters are most commonly measured and where there might be information gaps. Both marine bird and marine mammal research and monitoring are widespread throughout the Pacific, with 535 entries for marine mammals and 1,911 entries for marine birds. Although we provide summaries of key aspects within research and monitoring programs, the associated database can be further queried in several ways. Versioning of this database format essentially creates a “living database” that can be updated in the future as new information becomes available.

California, Oregon, Washington↗

USGS2019

Synopsis of research programs that can provide baseline and monitoring information for offshore energy activities in the Pacific region: Seabird and marine mammal surveys in the Pacific region

Alaska, California, Hawaii, Oregon, Washington↗

USGS2018

Detecting southern California’s white sharks with environmental DNA

To improve ability to detect white sharks without the need for tags, or visual census, we developed a species-specific environmental DNA (eDNA) assay that targets a 163 bp fragment of the white shark ( Carcharodon carcharias ) mitochondrial cytochrome B gene on a digital droplet PCR (ddPCR) platform. We used this marker to detect white shark DNA in 250 ml water samples taken from across two sites in Santa Barbara, California (United States) frequented by juvenile white sharks. We did not detect white shark DNA in samples from two neighboring sites where sharks are presumably absent, suggesting that eDNA can indicate nearby white sharks. This marker development, testing, and opportunistic application in a region with known distributions of white sharks indicates that eDNA could be developed further to monitor white sharks, thereby informing conservation planning and public safety. With the potential increase in white shark populations due to decades of protection, there is a need for fishery independent methods for assessing white shark distributions, and eDNA may provide an ideal, non-intrusive tool for coastal assessments.

California↗

USGS2018

Sea‐level rise, habitat loss, and potential extirpation of a salt marsh specialist bird in urbanized landscapes

Sea‐level rise (SLR) impacts on intertidal habitat depend on coastal topology, accretion, and constraints from surrounding development. Such habitat changes might affect species like Belding's savannah sparrows ( Passerculus sandwichensis beldingi ; BSSP), which live in high‐elevation salt marsh in the Southern California Bight. To predict how BSSP habitat might change under various SLR scenarios, we first constructed a suitability model by matching bird observations with elevation. We then mapped current BSSP breeding and foraging habitat at six estuarine sites by applying the elevation‐suitability model to digital elevation models. To estimate changes in digital elevation models under different SLR scenarios, we used a site‐specific, one‐dimensional elevation model (wetland accretion rate model of ecosystem resilience). We then applied our elevation‐suitability model to the projected digital elevation models. The resulting maps suggest that suitable breeding and foraging habitat could decline as increased inundation converts middle‐ and high‐elevation suitable habitat to mudflat and subtidal zones. As a result, the highest SLR scenario predicted that no suitable breeding or foraging habitat would remain at any site by 2100 and 2110. Removing development constraints to facilitate landward migration of high salt marsh, or redistributing dredge spoils to replace submerged habitat, might create future high salt marsh habitat, thereby reducing extirpation risk for BSSP in southern California.

Ecology and Evolution↗