Geology topics

Katherine H. Haman

Publications and source records attributed to Katherine H. Haman.

5 recordsLinked to original sources

USGS2025

Invasive African clawed frogs ( Xenopus laevis ) in Washington State: Status, response efforts, and lessons learned

The African clawed frog (ACF, Xenopus laevis ), which is indigenous to sub-Saharan Africa, is an aquatic invasive species known to have severe ecological impacts on native fauna when introduced into non-endemic regions. In 2015, ACFs were detected in Washington State, U.S. for the first time, and the species is now documented at three cities across western Washington: Lacey, Bothell, and Issaquah. We cataloged the known ACF occurrences, early management efforts, biological data about the frogs, and status of these invasive populations at the three sites from 2015–2023. The ACFs appear to be established in at least three watersheds in the Puget Sound region despite substantial effort at eradicating them at one site. Presence of ACFs in watersheds that lack surface connectivity implies independent introduction events, and the capture of frogs in multiple subbasins in the same watershed may reflect the potential for further spread. Because the ACF is nocturnal and otherwise behaviorally and visually highly cryptic, other established populations may go undetected. Where the ACFs are largely confined to stormwater ponds — as many of our current observations suggest — eradication may still be possible, though a substantial, focused effort would be required. In addition, significant refinement of eradication approaches will be needed to ensure effectiveness in topographically and vegetatively complex Pacific Northwest aquatic environments.

Washington↗

USGS2025

Mortality events in Yuma myotis (Myotis yumanensis) due to white-nose syndrome in Washington, USA

The impacts of white-nose syndrome (WNS) on many bat species in eastern North America have been well documented because of the length of time that the causative agent, Pseudogymnoascus destructans ( Pd ), has been present and the ability to monitor bat hibernacula in that region. However, the disease outcomes for bat species in western North America are less known because of the more recent arrival of Pd and the challenges associated with monitoring hibernating bat populations in parts of the western US. We report on mortality events involving Yuma myotis ( Myotis yumanensis ) bats at two locations in King and Benton counties, Washington, US, that were attributed to WNS during the late winters of 2020–21 and 2024, respectively. All bats that were grossly examined had depleted subcutaneous white adipose tissue, tested positive for the presence of Pd , had histopathologic lesions consistent with WNS, and did not exhibit evidence of other disease processes that may have contributed to death. Mortality was likely higher than what was documented because the locations of the Pd -contaminated hibernacula from which the bats originated were inaccessible or unknown and thus could not be surveyed. These findings indicate that Yuma myotis may be highly susceptible to WNS, and close monitoring is warranted to understand how WNS will affect population trends in this (and other) western bat species.

Washington↗

USGS2021

Enhanced between-site biosecurity to minimize herpetofaunal disease-causing pathogen transmission

Pathogens and their associated diseases have the potential to severely affect wildlife populations, including herpetofauna. Concern is increasing for transmission pathways of herpetofaunal diseases, especially for amphibians affected by the fungal pathogens Batrachochytrium dendrobatidis (Bd: Longcore et al. 1999) and B. salamandrivorans (Bsal: Martel et al. 2013), and amphibians and reptiles affected by Iridoviruses of the genus Ranavirus (Rv: Gray and Chinchar 2015) for which global human-mediated pathogen transmission is increasingly implicated (e.g., Fisher and Garner 2007; Picco and Collins 2008; Walker et al. 2008; Schloegel et al. 2009; Auliya et al. 2016; Martel et al. 2013, 2014; Fisher et al. 2012; Nguyen et al. 2017; O’Hanlon et al. 2018). Preventing the novel introductions of emerging infectious diseases is of paramount importance (Gray et al. 2015; Grant et al. 2016), as once they gain a foothold, they can be “essentially unstoppable” (Fisher et al. 2012). In order to minimize anthropogenic influences on disease dynamics, biosecurity procedures and decision-support systems for biosecurity prioritization have been developed. In general, such procedures for herpetofaunal emerging infectious diseases have been framed relative to the stages of pathogen emergence (pre-arrival, invasion front, epidemic, and establishment: e.g., Garner et al. 2016; Grant et al. 2017) as well as the intertwining contexts of herpetological research, natural resource management activities, integrated biodiversity conservation practices, and the human dimension of transmission of novel pathogens, (e.g., Gray et al. 2018; More et al. 2018).

Herpetological Review↗

USGS2017

Isolation and characterization of the fall Chinook aquareovirus

Background Salmon are paramount to the economy, ecology, and history of the Pacific Northwest. Viruses constitute one of the major threats to salmon health and well-being, with more than twenty known virus species that infect salmon. Here, we describe the isolation and characterization of the fall Chinook aquareovirus, a divergent member of the species Aquareovirus B within the family Reoviridae . Methods The virus was first found in 2014 as part of a routine adult broodstock screening program in which kidney and spleen tissue samples from healthy-appearing, adult fall Chinook salmon ( Oncorhynchus tshawytscha ) returning to a hatchery in Washington State produced cytopathic effects when inoculated onto a Chinook salmon embryo cell line (CHSE-214). The virus was not able to be confirmed by an RT-PCR assay using existing aquareovirus pan-species primers, and instead was identified by metagenomic next-generation sequencing. Metagenomic next-generation sequencing was used to recover the full genome and completed using 3′ RACE. Results The genome of the fall Chinook aquareovirus contains 11 segments of double-stranded RNA totaling 23.3 kb, with each segment flanked by the canonical sequence termini found in the aquareoviruses. Sequence comparisons and a phylogenetic analysis revealed a nucleotide identity of 63.2% in the VP7 gene with the Green River Chinook virus, placing the new isolate in the species Aquareovirus B . A qRT-PCR assay was developed targeting the VP2, which showed rapid growth of the isolate during the initial 5 days in culture using CHSE-214 cells. Conclusions This sequence represents the first complete genome of an Aquareovirus B species. Future studies will be required to understand the potential pathogenicity and epidemiology of the fall Chinook aquareovirus.

Virology Journal↗

USGS2016

First detection of bat white-nose syndrome in western North America

White-nose syndrome (WNS) is an emerging fungal disease of bats caused by Pseudogymnoascus destructans . Since it was first detected near Albany, NY, in 2006, the fungus has spread across eastern North America, killing unprecedented numbers of hibernating bats. The devastating impacts of WNS on Nearctic bat species are attributed to the likely introduction of P. destructans from Eurasia to naive host populations in eastern North America. Since 2006, the disease has spread in a gradual wavelike pattern consistent with introduction of the pathogen at a single location. Here, we describe the first detection of P. destructans in western North America in a little brown bat ( Myotis lucifugus ) from near Seattle, WA, far from the previously recognized geographic distribution of the fungus. Whole-genome sequencing and phylogenetic analyses indicated that the isolate of P. destructans from Washington grouped with other isolates of a presumed clonal lineage from the eastern United States. Thus, the occurrence of P. destructans in Washington does not likely represent a novel introduction of the fungus from Eurasia, and the lack of intensive surveillance in the western United States makes it difficult to interpret whether the occurrence of P. destructans in the Pacific Northwest is disjunct from that in eastern North America. Although there is uncertainty surrounding the impacts of WNS in the Pacific Northwest, the presence of the pathogen in western North America could have major consequences for bat conservation.

mSphere↗