Geology topics

K. Pacifici

Publications and source records attributed to K. Pacifici.

3 recordsLinked to original sources

USGS2021

Genetic structure and diversity of the endemic Carolina Madtom and conservation implications

Identification and conservation of genetic diversity within and among freshwater fish populations are important to better manage and conserve imperiled species. The Carolina Madtom Noturus furiosus is a small, nongame catfish that is endemic to the Tar and Neuse River basins of North Carolina. Genetic structure has not been studied in the species, and given recent population declines in both basins, identification of remaining genetic diversity within the species is vital for informing conservation efforts. To assess the status and trends of Carolina Madtom genetic structure, we analyzed genetic markers from 173 individuals to (1) define population genetic structure, (2) assess intra- and interbasin genetic differentiation in the Tar and Neuse River basins, and (3) present management implications to guide conservation efforts. Using 10 microsatellite primers developed for the related Yellowfin Madtom N. flavipinnis , we observed low genetic diversity in Carolina Madtoms. Genotype frequencies within samples were not in Hardy–Weinberg equilibrium, with a deficit of heterozygotes that could be due to family structure, inbreeding, or segregation of null alleles. Mean (±SD) M -ratios for the Tar River (0.414 ± 0.117) and Neuse River (0.117 ± 0.102) basin collections indicated that both populations have experienced recent demographic bottlenecks, with that in the Neuse River basin population being more severe. Effective population size estimates for the respective populations were small, on the order of tens of individuals, driving low genetic diversity within populations. However, the multilocus population differentiation metrics (mean ± SE = 0.135 ± 0.031) and D EST (0.125 ± 0.029) were significantly different from zero ( P < 0.001), indicating significant genetic differentiation between the Tar and Neuse River basin populations. Our findings will inform managers on the status of genetic variation in the Carolina Madtom and will guide conservation toward protective listing and management decisions to maintain the viability of this important endemic species.

North Carolina↗

USGS2014

Reducing fatigue damage for ships in transit through structured decision making

Research in structural monitoring has focused primarily on drawing inference about the health of a structure from the structure’s response to ambient or applied excitation. Knowledge of the current state can then be used to predict structural integrity at a future time and, in principle, allows one to take action to improve safety, minimize ownership costs, and/or increase the operating envelope. While much time and effort has been devoted toward data collection and system identification, research to-date has largely avoided the question of how to choose an optimal maintenance plan. This work describes a structured decision making (SDM) process for taking available information (loading data, model output, etc.) and producing a plan of action for maintaining the structure. SDM allows the practitioner to specify his/her objectives and then solves for the decision that is optimal in the sense that it maximizes those objectives. To demonstrate, we consider the problem of a Naval vessel transiting a fixed distance in varying sea-state conditions. The physics of this problem are such that minimizing transit time increases the probability of fatigue failure in the structural supports. It is shown how SDM produces the optimal trip plan in the sense that it minimizes both transit time and probability of failure in the manner of our choosing (i.e., through a user-defined cost function). The example illustrates the benefit of SDM over heuristic approaches to maintaining the vessel.

Marine Structures↗

USGS2008

Design for a region-wide adaptive search for the ivorybilled woodpecker with the objective of estimating occupancy and related parameters

We describe a survey design and field protocol for the Ivory-billed Woodpecker (Campephilus principalis) search effort that will: (1) allow estimation of occupancy, use, and detection probability for habitats at two spatial scales within the bird?s former range, (2) assess relationships between occupancy, use, and habitat characteristics at those scales, (3) eventually allow the development of a population viability model that depends on patch occupancy instead of difficult-to-measure demographic parameters, and (4) be adaptive, allowing newly collected information to update the above models and search locations. The approach features random selection of patches to be searched from a sampling frame stratified and weighted by patch quality, and requires multiple visits per patch. It is adaptive within a season in that increased search activity is allowed in and around locations of strong visual and/or aural evidence, and adaptive among seasons in that habitat associations allow modification of stratum weights. This statistically rigorous approach is an improvement over simply visiting the ?best? habitat in an ad hoc fashion because we can learn from prior effort and modify the search accordingly. Results from the 2006-07 search season indicate weak relationships between occupancy and habitat (although we suggest modifications of habitat measurement protocols), and a very low detection probability, suggesting more visits per patch are required. Sample size requirements will be discussed.

Book chapter↗