Geology topics

Judson Harvey

Publications and source records attributed to Judson Harvey.

At least 37 records · Page 2Linked to original sources

USGS2020

A one‐dimensional model for turbulent mixing in the benthic biolayer of stream and coastal sediments

In this paper, we develop and validate a rigorous modeling framework, based on Duhamel's Theorem, for the unsteady one-dimensional vertical transport of a solute across a flat sediment-water interface (SWI) and through the benthic biolayer of a turbulent stream. The modeling framework is novel in capturing the two-way coupling between evolving solute concentrations above and below the SWI and in allowing for a depth-varying diffusivity. Three diffusivity profiles within the sediment (constant, exponentially decaying, and a hybrid model) are evaluated against an extensive set of previously published laboratory measurements of turbulent mass transfer across the SWI. The exponential diffusivity profile best represents experimental observations and its reference diffusivity scales with the permeability Reynolds number, a dimensionless measure of turbulence at the SWI. The depth over which turbulence-enhanced diffusivity decays is of the order of centimeters and comparable to the thickness of the benthic biolayer. Thus, turbulent mixing across the SWI may serve as a universal transport mechanism, supplying the nutrient and energy fluxes needed to sustain microbial growth, and nutrient processing, in the benthic biolayer of stream and coastal sediments.

Water Resources Research↗

USGS2020

Unifying advective and diffusive descriptions of bedform pumping in the benthic biolayer of streams

Many water quality and ecosystem functions performed by streams occur in the benthic biolayer, the biologically active upper (~5 cm) layer of the streambed. Solute transport through the benthic biolayer is facilitated by bedform pumping, a physical process in which dynamic and static pressure variations over the surface of stationary bedforms (e.g., ripples and dunes) drive flow across the sediment-water interface. In this paper we derive two predictive modeling frameworks, one advective and the other diffusive, for solute transport through the benthic biolayer by bedform pumping. Both frameworks closely reproduce patterns and rates of bedform pumping previously measured in the laboratory, provided that the diffusion model's dispersion coefficient declines exponentially with depth. They are also functionally equivalent, such that parameter sets inferred from the 2D advective model can be applied to the 1D diffusive model, and vice versa. The functional equivalence and complementary strengths of these two models expand the range of questions that can be answered, for example, by adopting the 2D advective model to study the effects of geomorphic processes (such as bedform adjustments to land use change) on flow-dependent processes and the 1D diffusive model to study problems where multiple transport mechanisms combine (such as bedform pumping and turbulent diffusion). By unifying 2D advective and 1D diffusive descriptions of bedform pumping, our analytical results provide a straightforward and computationally efficient approach for predicting, and better understanding, solute transport in the benthic biolayer of streams and coastal sediments.

Water Resources Research↗

USGS2020

Accounting for temporal variability of streamflow in estimates of travel time

Retention, processing, and transport of solutes and particulates in stream corridors are influenced by the travel time of streamflow through stream channels, which varies dynamically with discharge. The effects of streamflow variability across sites and over time cannot be addressed by time-averaged models if parameters are based solely on the characteristics of mean streamflow. We develop methods to account for the effects of streamflow variability on travel time and compare our estimates to flow-weighted (“effective”) travel time at 100 streams in the southeastern United States. Velocity time series were generated for each stream from multiple-year (median 15.5 years), high-frequency (15 min interval) records of instantaneous streamflow and field measurements of velocity and inverted to produce time series of specific travel time [T/L]. The effective travel times for streams are 60–90% of the specific travel time of mean streamflow because a large fraction of the total streamflow volume is discharged during higher flows with higher velocities. We find that adjusting the specific travel time of mean streamflow at a site by a factor of 0.81 generally accounts for the effect of a skewed streamflow distribution, but at-site estimates of the coefficient of variation of streamflow are necessary to resolve differences in streamflow variability between streams or changes in variability over time. For example, the effective travel time of urban streams is less than the effective travel of forested streams in the southeastern United States as a result of increased streamflow variability in urban streams. Effective travel time accounts for both the variation in velocity with streamflow and the large fraction of streamflow discharged during high flows in most streams and provides time-averaged models with limited capability to account for effects of streamflow variability that otherwise they lack. This capability is needed for continental-scale modeling where streamflow variability is not uniform because of heterogeneous surficial geology, hydro-climatology, and vegetation and for applications where streamflow variability is not stationary as a response to climate change or hydrologic alteration.

Alabama, Georgia, North Carolina, Virginia, South ↗

USGS2020

Experimental shifts of hydrologic residence time in a sandy urban stream sediment-water interface alter nitrate removal and nitrous oxide fluxes

The sediment–water interfaces (SWI) of streams serve as important biogeochemical hotspots in watersheds and contribute to whole-catchment reactive nitrogen budgets and water-quality conditions. Recently, the SWI has been identified as an important source of nitrous oxide (N 2 O) produced in streams, with SWI residence time among the principal controls on its production. Here, we conducted a series of controlled manipulations of SWI exchange in an urban stream that has high dissolved N 2 O concentrations and where we concurrently evaluated less-mobile porosity dynamics. Our experiments took place within isolated portions of two sediment types: a coarse sandy stream bed resulting from excess road-sand application in the watershed, and a coarse sand mixed with clay and organic particles. In these manipulation experiments we systematically varied SWI vertical-flux rates and residence times to evaluate their effect on the fate of nitrate and production rates of N 2 O. Our experiments demonstrate that the fate and transport of nitrate and N 2 O production are influenced by hydrologic flux rates through SWI sediments and associated residence times. Specifically, we show that manipulations of hydrologic flux systematically shifted the depth of the bulk oxic–anoxic interface in the sediments, and that nitrate removal increased with residence time. Our results also support the emerging hypothesis of a ‘Goldilocks’ timescale for the production of nitrous oxide, when transport and reaction timescales favor incomplete denitrification. Areal N 2 O production rates were up to threefold higher during an intermediate residence-time experiment, compared to shorter or longer residence times. In our companion study we documented that the studied sediments were dominated by a long-residence-time less-mobile porosity domain, which could explain why we observed N 2 O production even in bulk-oxic sediments. Overall, we have experimentally demonstrated that changes to SWI hydrologic residence times and SWI substrate associated with urbanization can change the biogeochemical function of the river corridor.

Massachusetts↗

USGS2020

Low threshold for nitrogen concentration saturation in headwaters increases regional and coastal delivery

River corridors store, convey, and process nutrients from terrestrial and upstream sources, regulating delivery from headwaters to estuaries. A consequence of chronic excess nitrogen loading, as supported by theory and field studies in specific areas, is saturation of the biogeochemically-mediated nitrogen removal processes that weakens the capacity of the river corridor to remove nitrogen. Regional nitrogen models typically assume that removal capacity exhibits first-order behavior, scaling positively and linearly with increasing concentration, which may bias the estimation of where and at what rate nitrogen is removed by river corridors. Here we estimate the nitrogen concentration saturation threshold and its effects on nitrogen export from the Northeastern United States, revealing an average 42% concentration-induced reduction in headwater removal capacity. The weakened capacity caused an average 10% increase in the predicted delivery of riverine nitrogen from urban and agricultural watersheds compared to estimates using first-order process assumptions. Our results suggest that nitrogen removal may fall below a first-order process at a low riverine threshold concentration of 0.5 mg N L-1. Threshold behavior indicates that even modest mitigation of nitrogen concentration in river corridors above the threshold can cause a self-reinforcing boost to nitrogen removal.

Connecticut, District of Columbia, Delaware, Massa↗

USGS2020

The method controls the story - Sampling method impacts on the detection of pore-water nitrogen concentrations in streambeds

Biogeochemical gradients in streambeds are steep and can vary over short distances often making adequate characterisation of sediment biogeochemical processes challenging. This paper provides an overview and comparison of streambed pore-water sampling methods, highlighting their capacity to address gaps in our understanding of streambed biogeochemical processes. This work reviews and critiques available pore-water sampling techniques to characterise streambed biogeochemical conditions, including their characteristic spatial and temporal resolutions, and associated advantages and limitations. A field study comparing three commonly-used pore-water sampling techniques (multilevel mini-piezometers, miniature drivepoint samplers and diffusive equilibrium in thin-film gels) was conducted to assess differences in observed nitrate and ammonium concentration profiles. Pore-water nitrate concentrations did not differ significantly between sampling methods ( p -value = 0.54) with mean concentrations of 2.53, 4.08 and 4.02 mg l − 1 observed with the multilevel mini-piezometers, miniature drivepoint samplers and diffusive equilibrium in thin-film gel samplers, respectively. Pore-water ammonium concentrations, however, were significantly higher in pore-water extracted by multilevel mini-piezometers (3.83 mg l − 1 ) and significantly lower where sampled with miniature drivepoint samplers (1.05 mg l − 1 , p -values <0.01). Differences in observed pore-water ammonium concentration profiles between active (suction: multilevel mini-piezometers) and passive (equilibrium; diffusive equilibrium in thin-film gels) samplers were further explored under laboratory conditions. Measured pore-water ammonium concentrations were significantly greater when sampled by diffusive equilibrium in thin-film gels than with multilevel mini-piezometers (all p -values ≤0.02). The findings of this study have critical implications for the interpretation of field-based research on hyporheic zone biogeochemical cycling and highlight the need for more systematic testing of sampling protocols. For the first time, the impact of different active and passive pore-water sampling methods is addressed systematically here, highlighting to what degree the choice of pore-water sampling methods affects research outcomes, with relevance for the interpretation of previously published work as well as future studies.

Science of the Total Environment↗

USGS2020

Integrated hydro-terrestrial modeling: Development of a national capability

Water is one of our most important natural resources and is essential to our national economy and security. Multiple federal government agencies have mission elements that address national needs related to water. Each water-related agency champions a unique science and/or operational mission focused on advancing a portion of the nation’s ability to meet our water-related challenges, often in close collaboration with scientists from the academic community. These diverse mission needs have engendered a rich and extensive base of water-related data and modeling capabilities. While useful for their intended purposes, these capabilities are not well integrated to address complex regional problems and overarching national problems. These major investments by several federal agencies and their scientific partners, however, lay the foundation for an integrated hydro-terrestrial modeling and data infrastructure that will enhance knowledge, understanding, prediction, and management of the nation’s diverse water challenges.

Report↗

USGS2019

Floodplain inundation spectrum across the United States

Floodplain inundation poses both risks and benefits to society. In this study, we characterize floodplain inundation across the United States using 5800 stream gages. We find that between 4% and 12.6% of a river’s annual flow moves through its floodplains. Flood duration and magnitude is greater in large rivers, whereas the frequency of events is greater in small streams. However, the relative exchange of floodwater between the channel and floodplain is similar across small streams and large rivers, with the exception of the water-limited arid river basins. When summed up across the entire river network, 90% of that exchange occurs in small streams on an annual basis. Our detailed characterization of inundation hydrology provides a unique perspective that the regulatory, management, and research communities can use to help balance both the risks and benefits associated with flooding.

Nature Communications↗

USGS2019

Small ponds in headwater catchments are a dominant influence on regional nutrient and sediment budgets

Small ponds—farm ponds, detention ponds, or impoundments below 0.01 km 2 —serve important human needs throughout most large river basins. Yet the role of small ponds in regional nutrient and sediment budgets is essentially unknown, currently making it impossible to evaluate their management potential to achieve water quality objectives. Here we used new hydrography data sets and found that small ponds, depending on their spatial position within both their local catchments and the larger river network, can dominate the retention of nitrogen, phosphorus, and sediment compared to rivers, lakes, and reservoirs. Over 300,000 small ponds are collectively responsible for 34%, 69%, and 12% of the mean annual retention of nitrogen, phosphorus, and sediment in the Northeastern United States, respectively, with a dominant influence in headwater catchments (54%, 85%, and 50%, respectively). Small ponds play a critical role among the many aquatic features in long‐term nutrient and sediment loading to downstream waters.

Geophysical Research Letters↗

USGS2019

Metabolic rhythms in flowing waters: An approach for classifying river productivity regimes

Although seasonal patterns of ecosystem productivity have been extensively described and analyzed with respect to their primary forcings in terrestrial and marine systems, comparatively little is known about these same processes in rivers. However, it is now possible to perform a large‐scale synthesis on the patterns and drivers of river productivity regimes because of the recent sensor advances allowing for near‐continuous estimates of river productivity. Here, we explore a dataset of 47 U.S. rivers to examine whether there are characteristic river productivity regimes. We use classification approaches to develop a typology of productivity regimes and then use these regimes to examine differences with respect to potential controls of productivity. We identified two distinct metabolic regimes, which we named Summer Peak and Spring Peak Rivers, within our dataset. These regimes meaningfully differed in both the timing and magnitude of productivity and were robust to different approaches to classification. We also found that several variables, including watershed area and characteristics of water temperature or discharge, were able to predict the class membership of these regimes with modest accuracy. Our results support the presence of characteristic metabolic regimes and suggests that these regimes may have common sets of environmental controls. We present classification as one approach to begin exploring the productivity regimes of rivers. The strength of our approach is that it fully leverages these newly available high‐frequency productivity estimates to create classes that can be used to draw inferences about how the controls of river productivity differ between or within systems.

Limnology and Oceanography↗

USGS2018

How hydrologic connectivity regulates water quality in river corridors

Downstream flow in rivers is repeatedly delayed by hydrologic exchange with off‐channel storage zones where biogeochemical processing occurs. We present a dimensionless metric that quantifies river connectivity as the balance between downstream flow and the exchange of water with the bed, banks, and floodplains. The degree of connectivity directly influences downstream water quality — too little connectivity limits the amount of river water exchanged and leads to biogeochemically inactive water storage, while too much connectivity limits the contact time with sediments for reactions to proceed. Using a metric of reaction significance based on river connectivity, we provide evidence that intermediate levels of connectivity, rather than the highest or lowest levels, are the most efficient in removing nitrogen from Northeastern United States’ rivers. Intermediate connectivity balances the frequency, residence time, and contact volume with reactive sediments, which can maximize the reactive processing of dissolved contaminants and the protection of downstream water quality. Our simulations suggest denitrification dominantly occurs in riverbed hyporheic zones of streams and small rivers, whereas vertical turbulent mixing in contact with sediments dominates in mid‐size to large rivers. The metrics of connectivity and reaction significance presented here can facilitate scientifically based prioritizations of river management strategies to protect the values and functions of river corridors.

Journal of the American Water Resources Associatio↗

USGS2018

Thresholds of lake and reservoir connectivity in river networks control nitrogen removal

Lakes, reservoirs, and other ponded waters are ubiquitous features of the aquatic landscape, yet their cumulative role in nitrogen removal in large river basins is often unclear. Here we use predictive modeling, together with comprehensive river water quality, land use, and hydrography datasets, to examine and explain the influences of more than 18,000 ponded waters on nitrogen removal through river networks of the Northeastern United States. Thresholds in pond density where ponded waters become important features to regional nitrogen removal are identified and shown to vary according to a ponded waters’ relative size, network position, and degree of connectivity to the river network, which suggests worldwide importance of these new metrics. Consideration of the interacting physical and biological factors, along with thresholds in connectivity, reveal where, why, and how much ponded waters function differently than streams in removing nitrogen, what regional water quality outcomes may result, and in what capacity management strategies could most effectively achieve desired nitrogen loading reduction.

Connecticut, Delaware, District of Columbia, Maine↗

USGS2017

Flow and residence times of dynamic river bank storage and sinuosity-driven hyporheic exchange

Hydrologic exchange fluxes (HEFs) vary significantly along river corridors due to spatiotemporal changes in discharge and geomorphology. This variability results in the emergence of biogeochemical hot-spots and hot-moments that ultimately control solute and energy transport and ecosystem services from the local to the watershed scales. In this work, we use a reduced-order model to gain mechanistic understanding of river bank storage and sinuosity-driven hyporheic exchange induced by transient river discharge. This is the first time that a systematic analysis of both processes is presented and serves as an initial step to propose parsimonious, physics-based models for better predictions of water quality at the large watershed scale. The effects of channel sinuosity, alluvial valley slope, hydraulic conductivity, and river stage forcing intensity and duration are encapsulated in dimensionless variables that can be easily estimated or constrained. We find that the importance of perturbations in the hyporheic zone's flux, residence times, and geometry is mainly explained by two-dimensionless variables representing the ratio of the hydraulic time constant of the aquifer and the duration of the event (Γ d ) and the importance of the ambient groundwater flow ( ). Our model additionally shows that even systems with small sensitivity, resulting in small changes in the hyporheic zone extent, are characterized by highly variable exchange fluxes and residence times. These findings highlight the importance of including dynamic changes in hyporheic zones for typical HEF models such as the transient storage model.

Water Resources Research↗

USGS2017

The metabolic regimes of flowing waters

The processes and biomass that characterize any ecosystem are fundamentally constrained by the total amount of energy that is either fixed within or delivered across its boundaries. Ultimately, ecosystems may be understood and classified by their rates of total and net productivity and by the seasonal patterns of photosynthesis and respiration. Such understanding is well developed for terrestrial and lentic ecosystems but our understanding of ecosystem phenology has lagged well behind for rivers. The proliferation of reliable and inexpensive sensors for monitoring dissolved oxygen and carbon dioxide is underpinning a revolution in our understanding of the ecosystem energetics of rivers. Here, we synthesize our current understanding of the drivers and constraints on river metabolism, and set out a research agenda aimed at characterizing, classifying and modeling the current and future metabolic regimes of flowing waters.

Limnology and Oceanography↗

USGS2017

Role of a naturally varying flow regime in Everglades restoration

The Everglades is a low-gradient floodplain predominantly on organic soil that undergoes seasonally pulsing sheetflow through a network of deepwater sloughs separated by slightly higher elevation ridges. The seasonally pulsing flow permitted the coexistence of ridge and slough vegetation, including the persistence of productive, well-connected sloughs that seasonally concentrated prey and supported wading bird nesting success. Here we review factors contributing to the origin and to degradation of the ridge and slough ecosystem in an attempt to answer “How much flow is needed to restore functionality”? A key restoration objective is to increase sheetflow lost during the past century to reestablish interactions between flow, water depth, vegetation production and decomposition, and transport of flocculent organic sediment that build and maintain ridge and slough distinctions. Our review finds broad agreement that perturbations of water level depth and its fluctuations were primary in the degradation of landscape functions, with critical contributions from perturbed water quality, and flow velocity and direction. Whereas water levels are expected to be improved on average across a range of restoration scenarios that replace between 79 and 91% of predrainage flows, the diminished microtopography substantially decreases the probability of timely improvements in some areas whereas others that retain microtopographic differences are poised for restoration benefits. New advances in predicting restoration outcomes are coming from biophysical modeling of ridge–slough dynamics, system-wide measurements of landscape functionality, and large-scale flow restoration experiments, including active management techniques to kick-start slough regeneration.

Florida↗

USGS2017

Complex networks of functional connectivity in a wetland reconnected to its floodplain

Disturbances such as fire or flood, in addition to changing the local magnitude of ecological, hydrological, or biogeochemical processes, can also change their functional connectivity—how those processes interact in space. Complex networks offer promise for quantifying functional connectivity in watersheds. The approach resolves connections between nodes in space based on statistical similarities in perturbation signals (derived from solute time series) and is sensitive to a wider range of timescales than traditional mass-balance modeling. We use this approach to test hypotheses about how fire and flood impact ecological and biogeochemical dynamics in a wetland (Everglades, FL, USA) that was reconnected to its floodplain. Reintroduction of flow pulses after decades of separation by levees fundamentally reconfigured functional connectivity networks. The most pronounced expansion was that of the calcium network, which reflects periphyton dynamics and may represent an indirect influence of elevated nutrients, despite the comparatively smaller observed expansion of phosphorus networks. With respect to several solutes, periphyton acted as a “biotic filter,” shifting perturbations in water-quality signals to different timescales through slow but persistent transformations of the biotic community. The complex-networks approach also revealed portions of the landscape that operate in fundamentally different regimes with respect to dissolved oxygen, separated by a threshold in flow velocity of 1.2 cm/s, and suggested that complete removal of canals may be needed to restore connectivity with respect to biogeochemical processes. Fire reconfigured functional connectivity networks in a manner that reflected localized burn severity, but had a larger effect on the magnitude of solute concentrations.

Florida↗

USGS2017

Fine particle retention within stream storage areas at base flow and in response to a storm event

Fine particles (1–100 µm), including particulate organic carbon (POC) and fine sediment, influence stream ecological functioning because they may contain or have a high affinity to sorb nitrogen and phosphorus. These particles are immobilized within stream storage areas, especially hyporheic sediments and benthic biofilms. However, fine particles are also known to remobilize under all flow conditions. This combination of downstream transport and transient retention, influenced by stream geomorphology, controls the distribution of residence times over which fine particles influence stream ecosystems. The main objective of this study was to quantify immobilization and remobilization rates of fine particles in a third-order sand-and-gravel bed stream (Difficult Run, Virginia, USA) within different geomorphic units of the stream (i.e., pool, lateral cavity, and thalweg). During our field injection experiment, a thunderstorm-driven spate allowed us to observe fine particle dynamics during both base flow and in response to increased flow. Solute and fine particles were measured within stream surface waters, pore waters, sediment cores, and biofilms on cobbles. Measurements were taken at four different subsurface locations with varying geomorphology and at multiple depths. Approximately 68% of injected fine particles were retained during base flow until the onset of the spate. Retention was evident even after the spate, with 15.4% of the fine particles deposited during base flow still retained within benthic biofilms on cobbles and 14.9% within hyporheic sediment after the spate. Thus, through the combination of short-term remobilization and long-term retention, fine particles can serve as sources of carbon and nutrients to downstream ecosystems over a range of time scales.

Virginia↗

USGS2017

Disrupted carbon cycling in restored and unrestored urban streams: Critical timescales and controls

Carbon fixation and respiration in flowing waterways play significant roles in global and regional carbon budgets, yet how land use and watershed management interact with temporal disturbances (storms) to influence metabolism remains poorly understood. Here, we combine long-term with synoptic sampling of metabolism and its variable controls in neighboring watersheds of the Chesapeake Bay to resolve limiting factors and critical timescales associated with recovery from disturbance. We found that, relative to predictions of the river continuum concept, focal streams have “disrupted” carbon cycles, with carbon balances closer to zero, and, in some cases, tighter coupling between gross primary production (GPP) and ecosystem respiration (ER), attributable to carbon limitation. Carbon became limiting to ER where flashy storm hydrographs and simplified channel geomorphology inhibited accumulation of fine sediment. Shannon entropy analysis of timescales revealed that fine sediment served as a time-release capsule for nutrients and carbon over 4–6 months, fueling biogeochemical transformations. Loss of fines through hydraulic disturbance had up to 30-d impacts on GPP and 50-d impacts on ER in the stream with carbon limitation. In contrast, where GPP and ER were not tightly coupled, recovery occurred within 1 d. Results suggest that a complex interplay between nutrient and carbon limitation and mechanical and chemical disturbance governs patterns and consequences of disrupted carbon cycling in urban streams. Carbon limitation and tight GPP/ER coupling enhance the vulnerability of stream ecosystem functions, but best management practices that target stormflow reduction and channel geomorphic diversity can break that coupling and minimize carbon cycle disruptions.

Limnology and Oceanography↗