Geology topics
Publications and source records attributed to Joshua T. Ackerman.
This large, striking shorebird with long bluish-gray legs, a long recurved bill, and a black-and-white chevron pattern on its back and wings is one of four Avocet species in the world, the only one with distinct breeding and non-breeding plumages -- its grayish-white head and neck feathers become cinnamon in early spring as birds begin to form pairs and migrate to breeding areas.
Studies of pathogen transmission typically overlook that wildlife hosts can include both migrant and resident populations when attempting to model circulation. Through the application of stable isotopes in flight feathers, we estimated the migration strategy of mallards ( Anas platyrhynchos ) occurring on California wintering grounds. Our study demonstrates that mallards- a principal host of avian influenza virus (AIV) in nature, contribute differently to virus gene flow depending on migration strategy. No difference in AIV prevalence was detected between resident (9.6%), intermediate-distance (9.6%) and long-distance migrants (7.4%). Viral diversity among the three groups was also comparable, possibly owing to viral pool mixing when birds converge at wetlands during winter. However, migrants and residents contributed differently to the virus gene pool at wintering wetlands. Migrants introduced virus from northern breeding grounds (Alaska and the NW Pacific Rim) into the wintering population, facilitating gene flow at continental scales, but circulation of imported virus appeared to be limited. In contrast, resident mallards acted as AIV reservoirs facilitating year-round circulation of limited subtypes (i.e. H5N2) at lower latitudes. This study supports a model of virus exchange in temperate regions driven by the convergence of wild birds with separate geographic origins and exposure histories.
We examined mercury exposure in 133 endangered California clapper rails ( Rallus longirostris obsoletus ) within tidal marsh habitats of San Francisco Bay, California from 2006 to 2010. Mean total mercury concentrations were 0.56 μg/g ww in blood (range: 0.15–1.43), 9.87 μg/g fw in head feathers (3.37–22.0), 9.04 μg/g fw in breast feathers (3.68–20.2), and 0.57 μg/g fww in abandoned eggs (0.15–2.70). We recaptured 21 clapper rails and most had low within-individual variation in mercury. Differences in mercury concentrations were largely attributed to tidal marsh site, with some evidence for year and quadratic date effects. Mercury concentrations in feathers were correlated with blood, and slopes differed between sexes ( R 2 = 0.58–0.76). Body condition was negatively related to mercury concentrations. Model averaged estimates indicated a potential decrease in body mass of 20–22 g (5–7%) over the observed range of mercury concentrations. Our results indicate the potential for detrimental effects of mercury contamination on endangered California clapper rails in tidal marsh habitats.
The spread of avian influenza viruses (AIV) in nature is intrinsically linked with the movements of wild birds. Wild birds are the reservoirs for the virus and their migration may facilitate the circulation of AIV between breeding and wintering areas. This cycle of dispersal has become widely accepted; however, there are few AIV studies that present cross-seasonal information. A flyway perspective is critical for understanding how wild birds contribute to the persistence of AIV over large spatial and temporal scales, with implications for how to focus surveillance efforts and identify risks to public health. This study characterized spatio-temporal infection patterns in 10,389 waterfowl at two important locations within the Pacific Flyway--breeding sites in Interior Alaska and wintering sites in California's Central Valley during 2007-2009. Among the dabbling ducks sampled, the northern shoveler (Anas clypeata) had the highest prevalence of AIV at both breeding (32.2%) and wintering (5.2%) locations. This is in contrast to surveillance studies conducted in other flyways that have identified the mallard (Anas platyrhynchos) and northern pintail (Anas acuta) as hosts with the highest prevalence. A higher diversity of AIV subtypes was apparent at wintering (n=42) compared with breeding sites (n=17), with evidence of mixed infections at both locations. Our study suggests that wintering sites may act as an important mixing bowl for transmission among waterfowl in a flyway, creating opportunities for the reassortment of the virus. Our findings shed light on how the dynamics of AIV infection of wild bird populations can vary between the two ends of a migratory flyway.
Historically, Forster’s Terns ( Sterna forsteri ), American Avocets ( Recurvirostra americana ), and Black-necked Stilts ( Himantopus mexicanus ) were uncommon residents of San Francisco Bay, California (Grinnell and others, 1918; Grinnell and Wythe, 1927; Sibley, 1952). Presently, however, avocets and stilts are the two most abundant breeding shorebirds in San Francisco Bay (Stenzel and others, 2002; Rintoul and others, 2003). More than 4,000 avocets and 1,000 stilts, roughly 20 percent of their San Francisco Bay wintering populations, breed within the estuary, making San Francisco Bay the largest breeding area for these species on the Pacific Coast (Stenzel and others, 2002; Rintoul and others, 2003). Forster’s Terns were first observed breeding in the San Francisco Bay in 1948 (110 nests); they had increased to over 4000 individuals by the 1980s (Sibley, 1952; Gill, 1977; Harvey and others, 1992; Carter and others, 1990) and were estimated at 2000–3000 for 1998–2002; (Strong and others, 2004). It is hypothesized that the relatively large size of the current waterbird breeding populations is a result of the creation of artificial salt evaporation ponds from the 1930s through the 1950s (Gill, 1977; Goals Project, 1999). Until recently, these salt ponds and associated islands used by waterbirds for nesting have been managed relatively similarly and have supported large breeding waterbird populations. Recently, the South Bay Salt Pond Restoration Project has implemented plans to convert 50–90 percent of the 15,000 acres of salt ponds in the South San Francisco Bay back to tidal marsh habitat. Therefore, there is concern that the Restoration Project, while benefiting other native species, could negatively influence local breeding populations of waterbirds that are reliant on salt pond habitats for both breeding and foraging. A primary goal of the South Bay Salt Pond Restoration Project is to maintain current breeding waterbird populations (South Bay Salt Pond Long-Term Restoration Project, 2004); thus, specific efforts are planned to ensure that the Restoration Project enhances the habitats of the remaining salt ponds for breeding waterbirds. Here, we provide a summary of nesting ecology data for Forster’s Terns, American Avocets, and Black-necked Stilts, collected from 2005 to 2010 in the areas of the South Bay Salt Pond Restoration Project, including lands managed by the Don Edwards San Francisco Bay National Wildlife Refuge and Eden Landing Ecological Reserve. These results provide baseline conditions for breeding waterbirds prior to implementation of most restoration actions and can be used to both guide future restoration actions as well as to determine the effect of the South Bay Salt Pond Restoration Project on breeding waterbirds. It is imperative to continue to collect nesting waterbird data annually to assess the response of birds to the South Bay Salt Pond Restoration Project.
The San Francisco Bay estuary is highly urbanized, but it supports the largest remaining extent of tidal salt marshes on the west coast of North America as well as a diverse native bird community. San Francisco Bay tidal marshes are occupied by more than 113 bird species that represent 31 families, including five subspecies from three families that we denote as tidal-marsh obligates. To better identify the niche of bird species in tidal marshes, we present a review of functional groups based on foraging guilds and habitat associations. Foraging guilds describe the method by which species obtain food from tidal marshes, while habitat associations describe broad areas within the marsh that have similar environmental conditions. For example, the ubiquitous song sparrows (Alameda Melospiza melodia pusillula , Suisun M. m. maxillaris , and San Pablo M. m. samuelis ) are surface-feeding generalists that consume prey from vegetation and the ground, and they are found across the entire marsh plain into the upland–marsh transition. In contrast, surface-feeding California black rails ( Laterallus jamaicensis coturniculus ) are cryptic, and generally restricted in their distribution to the mid- and high-marsh plain. Although in the same family, the endangered California clapper rail ( Rallus longirostris obsoletus ) has become highly specialized, foraging primarily on benthic fauna within marsh channels when they are exposed at low tide. Shorebirds such as the black-necked stilt ( Himantopus mexicanus ) typically probe in mud flats to consume macroinvertebrate prey, and are generally restricted to foraging on salt pans within the marsh plain, in ponds, or on mud flats during transitional stages of marsh evolution. The abundance and distribution of birds varies widely with changing water depths and vegetation colonization during different stages of restoration. Thus, tidal-marsh birds represent a rich and diverse community in bay marshes, with niches that may be distinguished by the food resources they consume and the habitats that they occupy along the tidal gradient.
When nest predation levels are very high or very low, the absolute range of observable nest success is constrained (a floor/ceiling effect), and it may be more difficult to detect density-dependent nest predation. Density-dependent nest predation may be more detectable in years with moderate predation rates, simply because there can be a greater absolute difference in nest success between sites. To test this, we replicated a predation experiment 10 years after the original study, using both natural and artificial nests, comparing a year when overall rates of nest predation were high (2000) to a year with moderate nest predation (2010). We found no evidence for density-dependent predation on artificial nests in either year, indicating that nest predation is not density-dependent at the spatial scale of our experimental replicates (1-ha patches). Using nearest-neighbor distances as a measure of nest dispersion, we also found little evidence for “dispersion-dependent” predation on artificial nests. However, when we tested for dispersion-dependent predation using natural nests, we found that nest survival increased with shorter nearest-neighbor distances, and that neighboring nests were more likely to share the same nest fate than non-adjacent nests. Thus, at small spatial scales, density-dependence appears to operate in the opposite direction as predicted: closer nearest neighbors are more likely to be successful. We suggest that local nest dispersion, rather than larger-scale measures of nest density per se, may play a more important role in density-dependent nest predation.
Toxicological risk of methylmercury exposure to juvenile birds is complex due to the highly transient nature of mercury concentrations as chicks age. We examined total mercury and methylmercury concentrations in blood, liver, kidney, muscle, and feathers of 111 Forster's tern (Sterna forsteri), 69 black-necked stilt (Himantopus mexicanus), and 43 American avocet (Recurvirostra americana) chicks as they aged from hatching through postfledging at wetlands that had either low or high mercury contamination in San Francisco Bay, California. For each waterbird species, internal tissue, and wetland, total mercury and methylmercury concentrations changed rapidly as chicks aged and exhibited a quadratic, U-shaped pattern from hatching through postfledging. Mercury concentrations were highest immediately after hatching, due to maternally deposited mercury in eggs, then rapidly declined as chicks aged and diluted their mercury body burden through growth in size and mercury depuration into growing feathers. Mercury concentrations then increased during fledging when mass gain and feather growth slowed, while chicks continued to acquire dietary mercury. In contrast to mercury in internal tissues, mercury concentrations in chick feathers were highly variable and declined linearly with age. For 58 recaptured Forster's tern chicks, the proportional change in blood mercury concentration was negatively related to the proportional change in body mass, but not to the amount of feathers or wing length. Thus, mercury concentrations declined more in chicks that gained more mass between sampling events. The U-shaped pattern of mercury concentrations from hatching to fledging indicates that juvenile birds may be at highest risk to methylmercury toxicity shortly after hatching when maternally deposited mercury concentrations are still high and again after fledging when opportunities for mass dilution and mercury excretion into feathers are limited.
Bioindicators of oxidative stress were examined in prebreeding and breeding adult and chick Forster's terns ( Sterna forsteri ) and in prebreeding adult Caspian terns ( Hydroprogne caspia ) in San Francisco Bay, California. Highest total mercury (THg) concentrations (mean±standard error;μg/g dry wt) in liver (17.7±1.7), kidney (20.5±1.9), and brain (3.0±0.3) occurred in breeding adult Forster's terns. The THg concentrations in liver were significantly correlated with hepatic depletion of reduced glutathione (GSH), increased oxidized glutathione (GSSG):GSH ratio, and decreased hepatic gamma-glutamyl transferase (GGT) activity in adults of both tern species. Prefledging Forster's tern chicks with one-fourth the hepatic THg concentration of breeding adults exhibited effects similar to adults. Total mercury-related renal GSSG increased in adults and chicks. In brains of prebreeding adults, THg was correlated with a small increase in glucose-6-phosphate dehydrogenase (G-6-PDH) activity, suggestive of a compensatory response. Brain THg concentrations were highest in breeding adult Forster's terns and brain tissue exhibited increased lipid peroxidation as thiobarbituric acid-reactive substances, loss of protein bound thiols (PBSH), and decreased activity of antioxidant enzymes, GSSG reductase (GSSGrd), and G-6-PDH. In brains of Forster's tern chicks there was a decrease in total reduced thiols and PBSH. Multiple indicator responses also pointed to greater oxidative stress in breeding Forster's terns relative to prebreeding terns, attributable to the physiological stress of reproduction. Some biondicators also were related to age and species, including thiol concentrations. Enzymes GGT, G-6-PDH, and GSSGred activities were related to species. Our results indicate that THg concentrations induced oxidative stress in terns, and suggest that histopathological, immunological, and behavioral effects may occur in terns as reported in other species.
We evaluated predation on nests and methods to detect predators using a combination of infrared cameras and plasticine eggs at nests of American avocets ( Recurvirostra americana ) and black-necked stilts ( Himantopus mexicanus ) in Don Edwards San Francisco Bay National Wildlife Refuge, San Mateo and Santa Clara counties, California. Each technique indicated that predation was prevalent; 59% of monitored nests were depredated. Most identifiable predation ( n = 49) was caused by mammals (71%) and rates of predation were similar on avocets and stilts. Raccoons ( Procyon lotor ) and striped skunks ( Mephitis mephitis ) each accounted for 16% of predations, whereas gray foxes ( U rocyon cinereoargenteus ) and avian predators each accounted for 14%. Mammalian predation was mainly nocturnal (mean time, 0051 h ± 5 h 36 min), whereas most avian predation was in late afternoon (mean time, 1800 h ± 1 h 26 min). Nests with cameras and plasticine eggs were 1.6 times more likely to be predated than nests where only cameras were used in monitoring. Cameras were associated with lower abandonment of nests and provided definitive identification of predators.
The project was initiated in April 2010, and to date has included four sampling events of surface water (April, May, June/July, and August 2010) and five sampling events of biota (April, May, June/July, August, and September 2010) and three sampling events for surface sediment (May, June/July, and August 2010). This annual report briefly summarizes our progress to date.
We examined the prevalence of embryo malpositions and deformities in relation to total mercury (THg) and selenium (Se) concentrations in American avocet ( Recurvirostra americana ), black‐necked stilt ( Himantopus mexicanus ), and Forster's tern ( Sterna forsteri ) eggs in San Francisco Bay (CA, USA) during 2005 to 2007. Overall, 11% of embryos were malpositioned in eggs ≥18 d of age ( n = 282) and 2% of embryos were deformed in eggs ≥13 d of age ( n = 470). Considering only those eggs that failed to hatch ( n = 62), malpositions occurred in 24% of eggs ≥18 d of age and deformities occurred in 7% of eggs ≥13 d of age. The probability of an embryo being malpositioned increased with egg THg concentrations in Forster's terns, but not in avocets or stilts. The probability of embryo deformity was not related to egg THg concentrations in any species. Using a reduced dataset with both Se and THg concentrations measured in eggs ( n = 87), we found no interaction between Se and THg on the probability of an embryo being malpositioned or deformed. Results of the present study indicate that embryo malpositions were prevalent in waterbird eggs that failed to hatch and the likelihood of an embryo being malpositioned increased with egg THg concentrations in Forster's terns. We hypothesize that malpositioning of avian embryos may be one reason for mercury‐related hatching failure that occurs late in incubation, but further research is needed to elucidate this potential mechanism.
Wetlands provide numerous ecosystem services, but also can be sources of methylmercury (MeHg) production and export. Rice agricultural wetlands in particular may be important sites for MeHg bioaccumulation due to their worldwide ubiquity, periodic flooding schedules, and high use by wildlife. We assessed MeHg bioaccumulation within agricultural and perennial wetlands common to California’s Central Valley during summer, when the majority of wetland habitats are shallowly flooded rice fields. We introduced caged western mosquitofish ( Gambusia affinis ) within white rice ( Oryza sativa ), wild rice ( Zizania palustris ), and permanent wetlands at water inlets, centers, and outlets. Total mercury (THg) concentrations and body burdens in caged mosquitofish increased rapidly, exceeding baseline values at introduction by 135% to 1197% and 29% to 1566% among sites, respectively, after only 60 days. Mercury bioaccumulation in caged mosquitofish was greater in rice fields than in permanent wetlands, with THg concentrations at wetland outlets increasing by 12.1, 5.8, and 2.9 times over initial concentrations in white rice, wild rice, and permanent wetlands, respectively. In fact, mosquitofish caged at white rice outlets accumulated 721 ng Hg/fish in just 60 days. Mercury in wild mosquitofish and Mississippi silversides ( Menidia audens ) concurrently sampled at wetland outlets also were greater in white rice and wild rice than permanent wetlands. Within wetlands, THg concentrations and body burdens of both caged and wild fish increased from water inlets to outlets in white rice fields, and tended to not vary among sites in permanent wetlands. Fish THg concentrations in agricultural wetlands were high, exceeding 0.2 μg/g ww in 82% of caged fish and 59% of wild fish. Our results indicate that shallowly flooded rice fields are potential hotspots for MeHg bioaccumulation and, due to their global prevalence, suggest that agricultural wetlands may be important contributors to MeHg contamination.
We examined methylmercury (MeHg) bioavailability in four of the most predominant wetland habitats in California's Central Valley agricultural region during the spring and summer: white rice, wild rice, permanent wetlands, and shallowly-flooded fallow fields. We sampled MeHg and total mercury (THg) concentrations in two aquatic macroinvertebrate taxa at the inlets, centers, and outlets of four replicated wetland habitats (8 wetlands total) during two time periods bounding the rice growing season and corresponding to flood-up and pre-harvest (96 total samples). In general, THg concentrations (mean ± standard error) in Notonectidae ( Notonecta , back swimmers; 1.18 ± 0.08 µg g − 1 dry weight [dw]) were higher than in Corixidae ( Corisella , water boatmen; 0.89 ± 0.06 µg g − 1 dw, MeHg: 0.74 ± 0.05 µg g − 1 dw). MeHg concentrations were correlated with THg concentrations in Corixidae ( R 2 = 0.80) and 88% of THg was in the MeHg form. Wetland habitat type had an important influence on THg concentrations in aquatic invertebrates, but this effect depended on the sampling time period and taxa. In particular, THg concentrations in Notonectidae, but not Corixidae, were higher in permanent wetlands than in white rice, wild rice, or shallowly-flooded fallow fields. THg concentrations in Notonectidae were higher at the end of the rice growing season than near the time of flood-up, whereas THg concentrations in Corixidae did not differ between time periods. The effect of wetland habitat type was more prevalent near the end of the rice growing season, when Notonectidae THg concentrations were highest in permanent wetlands. Additionally, invertebrate THg concentrations were higher at water outlets than at inlets of wetlands. Our results indicate that although invertebrate THg concentrations increased from the time of flood-up to draw-down of wetlands, temporarily flooded habitats such as white rice, wild rice, and shallowly-flooded fallow fields did not have higher THg or MeHg concentrations in invertebrates than permanent wetlands.
San Francisco Bay is a wintering area for shorebirds, including American Avocets (Recurvirostra americana). Recently, a new resident population of avocets has emerged, presumably because of the development of tidal marshes into salt-evaporation ponds. In habitat restoration now underway, as many as 90% of salt ponds will be restored to tidal marsh. However, it is unknown if wintering and resident avocets coexist and if their requirements for space and habitat differ, necessitating different management for their populations to be maintained during restoration. We captured and radio-marked wintering avocets at a salt pond and a tidal flat to determine their population status (migrant or resident) and examine their space use and habitat selection. Of the radio-marked avocets, 79% were migrants and 21% were residents. At the salt pond, residents' fidelity to their location of capture was higher, and residents moved less than did migrants from the same site. Conversely, on the tidal flat, fidelity of residents to their site of capture was lower, and residents' home ranges were larger than those of migrants from the same site. Habitat selection of migrants and residents differed little; however, capture site influenced habitat selection far more than the birds' status as migrants or residents. Our study suggests that individual avocets have high site fidelity while wintering in San Francisco Bay, although the avocet as a species is plastic in its space use and habitat selection. This plasticity may allow wintering migrant and resident avocets to adapt to habitat change in San Francisco Bay. ?? The Cooper Ornithological Society 2010.
Floating bird eggs to estimate their age is a widely used technique, but few studies have examined its accuracy throughout incubation. We assessed egg flotation for estimating hatch date, day of incubation, and the embryo's developmental age in eggs of the American Avocet ( Recurvirostra americana ), Black-necked Stilt ( Himantopus mexicanus ), and Forster's Tern ( Sterna forsteri ). Predicted hatch dates based on egg flotation during our first visit to a nest were highly correlated with actual hatch dates ( r = 0.99) and accurate within 2.3 ± 1.7 (SD) days. Age estimates based on flotation were correlated with both day of incubation ( r = 0.96) and the embryo's developmental age ( r = 0.86) and accurate within 1.3 ± 1.6 days and 1.9 ± 1.6 days, respectively. However, the technique's accuracy varied substantially throughout incubation. Flotation overestimated the embryo's developmental age between 3 and 9 days, underestimated age between 12 and 21 days, and was most accurate between 0 and 3 days and 9 and 12 days. Age estimates based on egg flotation were generally accurate within 3 days until day 15 but later in incubation were biased progressively lower. Egg flotation was inaccurate and overestimated embryo age in abandoned nests (mean error: 7.5 ± 6.0 days). The embryo's developmental age and day of incubation were highly correlated ( r = 0.94), differed by 2.1 ± 1.6 days, and resulted in similar assessments of the egg-flotation technique. Floating every egg in the clutch and refloating eggs at subsequent visits to a nest can refine age estimates.
We examined whether host traits influenced the occurrence of avian influenza virus (AIV) in Anatidae (ducks, geese, swans) at wintering sites in California's Central Valley. In total, 3487 individuals were sampled at Sacramento National Wildlife Refuge and Conaway Ranch Duck Club during the hunting season of 2007-08. Of the 19 Anatidae species sampled, prevalence was highest in the northern shoveler (5.09%), followed by the ring-necked duck (2.63%), American wigeon (2.57%), bufflehead (2.50%), greater white-fronted goose (2.44%), and cinnamon teal (1.72%). Among host traits, density of lamellae (filtering plates) of dabbling ducks was significantly associated with AIV prevalence and the number of subtypes shed by the host, suggesting that feeding methods may influence exposure to viral particles. ?? 2010 American Association of Avian Pathologists.
A discriminant function analysis (DFA) model was developed with DNA sex verification so that external morphology could be used to sex 203 adult California Gulls (Larus californicus) in San Francisco Bay (SFB). The best model was 97% accurate and included head-to-bill length, culmen depth at the gonys, and wing length. Using an iterative process, the model was simplified to a single measurement (head-to-bill length) that still assigned sex correctly 94% of the time. A previous California Gull sex determination model developed for a population in Wyoming was then assessed by fitting SFB California Gull measurement data to the Wyoming model; this new model failed to converge on the same measurements as those originally used by the Wyoming model. Results from the SFB discriminant function model were compared to the Wyoming model results (by using SFB data with the Wyoming model); the SFB model was 7% more accurate for SFB California gulls. The simplified DFA model (head-to-bill length only) provided highly accurate results (94%) and minimized the measurements and time required to accurately sex California Gulls.