Geology topics

Joshua B. Mouser

Publications and source records attributed to Joshua B. Mouser.

8 recordsLinked to original sources

USGS2026

Stream health shows indirect and threshold responses to implementation of agricultural conservation practices

Many agricultural conservation practices (hereafter conservation practices) are intended to protect streams from the deleterious effects of agriculture, but desired effects of their implementation are not always realized. Understanding the pathways through which conservation practices influence stream health can guide future implementation. Our goal was to quantify how conservation practices influence stream health in pastureland watersheds. We asked 4 research questions: R1) What are the effects of land use and conservation practices on instream conditions? R2) What are the effects of instream conditions on biota? R3) What are the relative effects of land use, conservation practices, and instream conditions on biota? R4) How do conservation practice density (no./ha) and agricultural land use interact to influence stream health? We collected data on water quality (total suspended solids, total N, total P, and Escherichia coli bacteria), instream habitat (substrate embeddedness and bank stability), and macroinvertebrate communities from 31 sites in the upper Tennessee River basin of southwest Virginia, USA. The sites collectively represented spatial analytical gradients of agricultural land use and density of conservation practices, with the dominant practices including prescribed grazing, brush management, and fencing. We found that conservation practice implementation was indirectly related to biotic assemblages through changes in water quality and habitat, but practice density in the study area was not associated with instream conditions that supported biotic communities representative of reference conditions. Further improving instream habitat conditions may require innovative conservation practices, targeted placement of practices in critical source areas of pollutants, or higher densities of practices.

Virginia↗

USGS2026

Development of a SWAT+ model to improve conservation practice efficacy for protecting stream health in karst pasturelands

Placing appropriate conservation practices in critical source areas of pollutants can benefit stream health in karst environments susceptible to agricultural pollution. Watershed models, such as the Soil and Water Assessment Tool+ (SWAT+), can optimize both practice selection and placement across the landscape, but to our knowledge no studies have tested this model in karst pasturelands. Our goal was to understand pollutant dynamics in pasturelands with karst topography in southwest Virginia, United States. We built a SWAT+ model to predict streamflow and pollutant loads for four watersheds. SWAT+ predicted that streamflow estimates were most affected by setting the available water capacity to zero and increasing the hydraulic conductivity of the soil, revealing that water, and associated pollutants, move primarily through subsurface pathways. Predicted sediment yield was negatively associated with agricultural land cover and was strongly influenced by channel erodibility—indicating that the predominant sediment source may be streambanks. Therefore, practices that stabilize stream banks (e.g., fencing cattle out of streams) may be most effective at reducing sediment loads. The model unsatisfactorily predicted total nitrogen and total phosphorus loads. The utility of SWAT+ for cattle grazing operations in karst regions could be improved by more accurately representing the effects of cattle grazing on streambank erosion and the dynamic subsurface movement of pollutants.

Virginia↗

USGS2025

Landowners' cognitions and motivations coupled with practice durability influence persistence in grazing agricultural conservation practices in southwest Virginia

Agricultural conservation practices are often used to protect stream health while continuing food production. However, recovery of stream health is often not as rapid or extensive as planned. The efficacy of practices may be improved by promoting their continued use by landowners (i.e., persistence) after cost-share contracts with government agencies end. Persistence rates and their drivers are typically unknown. Therefore, we mail-surveyed 889 landowners to understand persistence in grazing practices in southwest Virginia. Survey responses were analyzed quantitatively using logistic regression and qualitatively via coding. We found that persistence rates for vegetative practices, cattle-exclusion fencing, off-stream watering structures, and pasture management were 74%, 84%, 94%, and 94%, respectively. Both the quantitative and qualitative analyses indicated that landowner cognitions (i.e., attitudes toward practices, environment, and agencies), environmental motivations, and practice durability influence persistence. Our results highlight that persistence could be encouraged by: (1) providing targeted messaging that demonstrates persistence benefits and aligns with landowners' motivations, (2) ensuring that responsibility to maintain practices is transferred during land-tenure changes, and (3) allocating more agency funding to practice maintenance.

Virginia↗

USGS2023

Global review reveals how disparate study motivations, analytical designs, and focal ions limit understanding of salinization effects on freshwater animals

Global salinization of freshwaters is adversely affecting biotic communities and ecosystem processes. We reviewed six decades (1960–2020) of literature published on animal responses to increased salinities across different taxonomic and ecological contexts and identified knowledge gaps. From 585 journal articles, we characterized 5924 responses of mollusks, crustaceans, zooplankton, non-arthropod invertebrates (NAI), insects, fishes, and amphibians to salinization. Insects and fishes were the most studied taxa; Na + and Cl − were the most studied ions − . Collectively, concentrations of the ions examined typically spanned five orders of magnitude. Species' invasiveness was a key motivation for studying mollusks, crustaceans, and fishes; threats of urbanization and road salts were key motivations for studying NAI, zooplankton, and amphibians. Laboratory studies were more common than field studies for most taxa. Focal life stages in laboratory studies varied widely but juveniles and adults were represented similarly in field studies. Studies of mollusks, NAI, and crustacean focused on adults; studies of zooplankton, insects, fishes, and amphibians focused on juveniles. Organismal- and population-level responses measuring solute uptake, internal chemistry, body condition, or ion concentrations predominated laboratory studies; population- and assemblage-level responses measuring abundance, spatial distribution, or assemblage composition predominated field studies. Negative responses to salinization predominated but positive and unimodal responses were apparent across all taxa and organizational levels. Key topics for further research include a) salinity responses by more taxa, b) responses to especially toxic ions (i.e., potassium, bicarbonate, sulfate, magnesium), c) mechanisms causing positive and unimodal responses, d) traits underpinning responses, e) effects transcending organizational levels, f) ion-specific response thresholds, and g) interactions between salinity and other stressors. Our review suggests inter-taxa variation in sensitivity to salinization reflects occurrence of certain biological traits, including gill-breathing, semi-permeable skin, multiple life stages, and limited mobility. We propose a traits-based framework to predict salinization sensitivity from shared traits. This evolutionary approach could inform management aimed at preventing or reducing adverse impacts of freshwater salinization.

Science of the Total Environment↗

USGS2022

Lithology and disturbance drive cavefish and cave crayfish occurrence in the Ozark Highlands ecoregion

Diverse communities of groundwater-dwelling organisms (i.e., stygobionts) are important for human wellbeing; however, we lack an understanding of the factors driving their distributions, making it difficult to protect many at-risk species. Therefore, our study objective was to determine the landscape factors related to the occurrence of cavefishes and cave crayfishes in the Ozark Highlands ecoregion, USA. We sampled cavefishes and cave crayfishes at 61 sampling units using both visual and environmental DNA surveys. We then modeled occurrence probability in relation to lithology and human disturbance while accounting for imperfect detection. Our results indicated that occurrence probability of cave crayfishes was negatively associated with human disturbance, whereas there was a weak positive relationship between cavefish occurrence and disturbance. Both cavefishes and cave crayfishes were more likely to occur in limestone rather than dolostone lithology. Our results indicate structuring factors are related to the distribution of these taxa, but with human disturbance as a prevalent modifier of distributions for cave crayfishes. Limiting human alteration near karst features may be warranted to promote the persistence of some stygobionts. Moreover, our results indicate current sampling efforts are inadequate to detect cryptic species; therefore, expanding sampling may be needed to develop effective conservation actions.

Arkansas, Missouri, Oklahoma↗

USGS2020

Gastric mill age estimates for ringed crayfish Faxonius neglectus neglectus (Faxon) and the influence of temperature on band formation

Counting bands via the gastric mill is a potential direct approach for ageing crayfish; however, the validity of ageing crustaceans using the gastric mill is unknown. Our study objectives were to 1) compare gastric mill age estimates to a traditional aging technique, 2) compare ageing precision among the ossicles, and 3) examine the effects of temperature on gastric mill band formation. From 2017–2018, we collected 681 ringed crayfish Faxonius neglectus neglectus (Faxon) from ten Ozark Highland streams. Our length-frequency analysis reflected seven age classes, whereas gastric mill age estimates indicated individuals were up to 10 yr of age. The length-frequency analysis age estimates showed good congruence (± 1 yr) with age estimates from the gastric mill 78% of the time. The coefficient of variation (CV) of age estimates from gastric mill bands between our readers was 29.7%. Ageing precision was highest when using the zygocardiac ossicles (CV = 12.4%). Gastric mill age estimates for known age-1 crayfish from a thermally stable laboratory were not significantly different from one, whereas age estimates from a thermally varying laboratory were greater than one. Our results indicate molting frequency does not control gastric mill band formation, and temperature plays a role in band formation.

Arkansas, Missouri, Oklahoma↗

USGS2019

Using environmental DNA (eDNA) to assess the presence of cavefish and cave crayfish populations in caves of the Ozark Highlands

Many cavefishes and cave crayfishes are considered of conservation concern; however, sampling these species is inherently difficult given their occupied environments. The goal of our project was to verify the presence of select karst organisms while developing the foundation for sampling approaches that might be useful to conservation and management agencies. Our project objectives were to develop assays to amplify deoxyribonucleic acid (DNA) from several species of Ozark cavefishes and cave crayfishes and complete an initial surveillance of locations across the Ozark Highlands using environmental DNA (eDNA). Using DNA either provided by agency cooperators or that we extracted from tissue samples, we PCR amplified and then sequenced the Cytochrome Oxidase 1 (CO1) gene for cave crayfishes and the NADH Dehydrogenase Subunit 2 (ND2) gene for cavefishes. We developed species-specific primers and probes for five cave crayfishes and two cavefishes. From February 2017 to May 2017, we sampled 1–5 sampling units from 42 caves, wells, and springs (i.e., sites) using eDNA and traditional visual surveys. We measured physicochemical parameters at each sampling unit to estimate detection probability associated with both techniques. We also calculated two occupancy covariates for each site using geospatial data. We successfully amplified Troglichthys rosae DNA from the environment and detected DNA representing this species at 24 of 40 sites. At 16 of the sites where we detected T. rosae DNA, we did not visually observe the species. Although our assay for Typlichthys eigenmanni successfully amplified the target DNA from the environment, it also resulted in false absences where the species was visually confirmed. Using eDNA to detect cave crayfishes was much more difficult. The assay for Cambarus subterraneus did not work for eDNA samples and we were unable to pick up DNA from the environment, even at locations where it was visually confirmed. Alternatively, the eDNA surveys worked well for C. tartarus and we were able to amplify DNA at every site where it was visually observed. Our assay for C. aculabrum was based on a single sample obtained from GenBank, and did not amplify eDNA from field samples. Lastly, our eDNA results from samples in the known range of Orconectes stygocaneyi suggested the species may be found at an additional cave. Detection using eDNA based on our O. stygocaneyi assay was likely low because it was designed from a pseudogene; however, positive eDNA samples were sequenced to confirm species-specific DNA. Detection probability of both cavefishes and cave crayfishes varied by survey technique and was influenced by water volume, water clarity, water velocity, and substrate. Detection of cavefishes and cave crayfishes via visual surveys decreased when water volume increased, whereas detection using eDNA increased with greater water volume. Detection between taxa using either sample method was highest in habitats classified by fine substrates, except for eDNA detection of crayfishes which was greatest in coarse substrates. Detection of cavefishes increased with water clarity, but detection of cave crayfishes increased with turbidity. Detection probability of both cavefishes and crayfishes using eDNA increased slightly with water velocity, but decreased with visual surveys as water velocity increased. Occupancy by both taxa was positively related to particular geologic series. Crayfish occupancy was negatively related to fine-scale anthropogenic disturbance (i.e., 500-m buffer around the site), whereas crayfish showed no relationship with disturbance. Our results suggest possible range extensions, provide insights to factors driving detection using both sample techniques, and suggest areas where recharge zones may be shared among caves. Future efforts focused on a comprehensive evaluation of genetic diversity among cave crayfishes to improve assay design could improve detection and the applicability of eDNA as a supplemental and non-invasive sampling approach.

Cooperator Science Series↗

USGS2018

Sampling the stream landscape: Improving the applicability of an ecoregion-level capture probability model for stream fishes

Temporal and spatial variability in streams result in heterogeneous gear capture probability (i.e., the proportion of available individuals identified) that confounds interpretation of data used to monitor fish abundance. We modeled tow-barge electrofishing capture probability at multiple spatial scales for nine Ozark Highland stream fishes. In addition to fish size, we identified seven reach-scale environmental characteristics associated with variable capture probability: stream discharge, water depth, conductivity, water clarity, emergent vegetation, wetted width–depth ratio, and proportion of riffle habitat. The magnitude of the relationship between capture probability and both discharge and depth varied among stream fishes. We also identified lithological characteristics among stream segments as a coarse-scale source of variable capture probability. The resulting capture probability model can be used to adjust catch data and derive reach-scale absolute abundance estimates across a wide range of sampling conditions with similar effort as used in more traditional fisheries surveys (i.e., catch per unit effort). Adjusting catch data based on variable capture probability improves the comparability of data sets, thus promoting both well-informed conservation and management decisions and advances in stream-fish ecology.

Arkansas, Missouri, Oklahoma↗