Geology topics

Joseph E. Hightower

Publications and source records attributed to Joseph E. Hightower.

At least 19 recordsLinked to original sources

USGS2015

Combining split-beam and dual-frequency identification sonars to estimate abundance of anadromous fishes in the Roanoke River, North Carolina

Riverine hydroacoustic techniques are an effective method for evaluating abundance of upstream migrating anadromous fishes. To use these methods in the Roanoke River, North Carolina, at a wide site with uneven bottom topography, we used a combination of split-beam sonar and dual-frequency identification sonar (DIDSON) deployments. We aimed a split-beam sonar horizontally to monitor midchannel and near-bottom zones continuously over the 3-month spring monitoring periods in 2010 and 2011. The DIDSON was rotated between seven cross-channel locations (using a vertical aim) and nearshore regions (using horizontal aims). Vertical deployment addressed blind spots in split-beam coverage along the bottom and provided reliable information about the cross-channel and vertical distributions of upstream migrants. Using a Bayesian framework, we modeled sonar counts within four cross-channel strata and apportioned counts by species using species proportions from boat electrofishing and gill netting. Modeled estimates (95% credible intervals [CIs]) of total upstream migrants in 2010 and 2011 were 2.5 million (95% CI, 2.4–2.6 million) and 3.6 million (95% CI, 3.4–3.9 million), respectively. Results indicated that upstream migrants are extremely shore- and bottom-oriented, suggesting nearshore DIDSON monitoring improved the accuracy and precision of our estimates. This monitoring protocol and model may be widely applicable to river systems regardless of their cross-sectional width or profile.

North American Journal of Fisheries Management↗

USGS2015

Estimating sturgeon abundance in the Carolinas using side-scan sonar

Sturgeons (Acipenseridae) are one of the most threatened taxa worldwide, including species in North Carolina and South Carolina. Populations of Atlantic Sturgeon Acipenser oxyrinchus in the Carolinas have been significantly reduced from historical levels by a combination of intense fishing and habitat loss. There is a need for estimates of current abundance, to describe status, and for estimates of historical abundance in order to provide realistic recovery goals. In this study we used N -mixture and distance models with data acquired from side-scan sonar surveys to estimate abundance of sturgeon in six major sturgeon rivers in North Carolina and South Carolina. Estimated abundances of sturgeon greater than 1 m TL in the Carolina distinct population segment (DPS) were 2,031 using the count model and 1,912 via the distance model. The Pee Dee River had the highest overall abundance of any river at 1,944 (count model) or 1,823 (distance model). These estimates do not account for sturgeon less than 1 m TL or occurring in riverine reaches not surveyed or in marine waters. Comparing the two models, the N -mixture model produced similar estimates using less data than the distance model with only a slight reduction of estimated precision.

Marine and Coastal Fisheries: Dynamics, Management↗

USGS2014

Fall spawning of Atlantic sturgeon in the Roanoke River, North Carolina

In 2012, the National Oceanic and Atmospheric Administration (NOAA) declared Atlantic Sturgeon Acipenser oxyrinchus oxyrinchus to be threatened or endangered throughout its range in U.S. waters. Restoration of the subspecies will require much new information, particularly on the location and timing of spawning. We used a combination of acoustic telemetry and sampling with anchored artificial substrates (spawning pads) to detect fall (September–November) spawning in the Roanoke River in North Carolina. This population is included in the Carolina Distinct Population Segment, which was classified by NOAA as endangered. Sampling was done immediately below the first shoals encountered by anadromous fishes, near Weldon. Our collection of 38 eggs during the 21 d that spawning pads were deployed appears to be the first such collection (spring or fall) for wild-spawned Atlantic Sturgeon eggs. Based on egg development stages, estimated spawning dates were September 17–18 and 18–19 at water temperatures from 25.3°C to 24.3°C and river discharge from 55 to 297 m 3 /s. These observations about fall spawning and habitat use should aid in protecting critical habitats and planning research on Atlantic Sturgeon spawning in other rivers.

North Carolina↗

USGS2014

Assessing distribution of migratory fishes and connectivity following complete and partial dam removals in a North Carolina River

Fish, especially migratory species, are assumed to benefit from dam removals that restore connectivity and access to upstream habitat, but few studies have evaluated this assumption. Therefore, we assessed the movement of migratory fishes in the springs of 2008 through 2010 and surveyed available habitat in the Little River, North Carolina, a tributary to the Neuse River, after three complete dam removals and one partial (notched) dam removal. We tagged migratory fishes with PIT tags at a resistance-board weir located at a dam removal site (river kilometer [rkm] 3.7) and followed their movements with an array of PIT antennas. The river-wide distribution of fish following removals varied by species. For example, 24–31% of anadromous American Shad Alosa sapidissima , 45–49% of resident Gizzard Shad Dorosoma cepedianum , and 4–11% of nonnative Flathead Catfish Pylodictis olivaris passed the dam removal site at rkm 56 in 2009 and 2010. No preremoval data were available for comparison, but reach connectivity appeared to increase as tagged individuals passed former dam sites and certain individuals moved extensively both upstream and downstream. However, 17–28% did not pass the partially removed dam at rkm 7.9, while 20–39% of those that passed remained downstream for more than a day before migrating upstream. Gizzard Shad required the deepest water to pass this notched structure, followed by American Shad then Flathead Catfish. Fish that passed the notched dam accessed more complex habitat (e.g., available substrate size-classes) in the middle and upper reaches. The results provide strong support for efforts to restore currently inaccessible habitat through complete removal of derelict dams.

North Carolina↗

USGS2014

American shad migratory behavior, weight loss, survival, and abundance in a North Carolina River following dam removals

Despite extensive management and research, populations of American Shad Alosa sapidissima have experienced prolonged declines, and uncertainty about the underlying mechanisms causing these declines remains. In the springs of 2007 through 2010, we used a resistance board weir and PIT technology to capture, tag, and track American Shad in the Little River, North Carolina, a tributary to the Neuse River with complete and partial removals of low-head dams. Our objectives were to examine migratory behaviors and estimate weight loss, survival, and abundance during each spawning season. Males typically immigrated earlier than females and also used upstream habitat at a higher percentage, but otherwise exhibited relatively similar migratory patterns. Proportional weight loss displayed a strong positive relationship with both cumulative water temperature during residence time and number of days spent upstream, and to a lesser extent, minimum distance the fish traveled in the river. Surviving emigrating males lost up to 30% of their initial weight and females lost up to 50% of their initial weight, indicating there are potential survival thresholds. Survival for the spawning season was low and estimates ranged from 0.07 to 0.17; no distinct factors (e.g., sex, size, migration distance) that could contribute to survival were detected. Sampled and estimated American Shad abundance increased from 2007 through 2009, but was lower in 2010. Our study provides substantial new information about American Shad spawning that may aid restoration efforts.

North Carolina↗

USGS2014

Multibeam sonar (DIDSON) assessment of American shad ( Alosa sapidissima ) approaching a hydroelectric dam

We investigated the fish community approaching the Veazie Dam on the Penobscot River, Maine, prior to implementation of a major dam removal and river restoration project. Multibeam sonar (dual-frequency identification sonar, DIDSON) surveys were conducted continuously at the fishway entrance from May to July in 2011. A 5% subsample of DIDSON data contained 43 793 fish targets, the majority of which were of Excellent (15.7%) or Good (73.01%) observation quality. Excellent quality DIDSON targets ( n = 6876) were apportioned by species using a Bayesian mixture model based on four known fork length distributions (river herring (alewife, Alosa psuedoharengus , and blueback herring, Alosa aestivalis ), American shad, Alosa sapidissima ) and two size classes (one sea-winter and multi-sea-winter) of Atlantic salmon ( Salmo salar ). 76.2% of targets were assigned to the American shad distribution; Atlantic salmon accounted for 15.64%, and river herring 8.16% of observed targets. Shad-sized (99.0%) and salmon-sized (99.3%) targets approached the fishway almost exclusively during the day, whereas river herring-sized targets were observed both during the day (51.1%) and at night (48.9%). This approach demonstrates how multibeam sonar imaging can be used to evaluate community composition and species-specific movement patterns in systems where there is little overlap in the length distributions of target species.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2014

Estimating movement and survival rates of a small saltwater fish using autonomous antenna receiver arrays and passive integrated transponder tags

We evaluated the performance of small (12.5 mm long) passive integrated transponder (PIT) tags and custom detection antennas for obtaining fine-scale movement and demographic data of mummichog Fundulus heteroclitus in a salt marsh creek. Apparent survival and detection probability were estimated using a Cormack Jolly Seber (CJS) model fitted to detection data collected by an array of 3 vertical antennas from November 2010 to March 2011 and by a single horizontal antenna from April to August 2011. Movement of mummichogs was monitored during the period when the array of vertical antennas was used. Antenna performance was examined in situ using tags placed in wooden dowels (drones) and in live mummichogs. Of the 44 tagged fish, 42 were resighted over the 9 mo monitoring period. The in situ detection probabilities of the drone and live mummichogs were high (~80-100%) when the ambient water depth was less than ~0.8 m. Upstream and downstream movement of mummichogs was related to hourly water depth and direction of tidal current in a way that maximized time periods over which mummichogs utilized the intertidal vegetated marsh. Apparent survival was lower during periods of colder water temperatures in December 2010 and early January 2011 (median estimate of daily apparent survival = 0.979) than during other periods of the study (median estimate of daily apparent survival = 0.992). During late fall and winter, temperature had a positive effect on the CJS detection probability of a tagged mummichog, likely due to greater fish activity over warmer periods. During the spring and summer, this pattern reversed possibly due to mummichogs having reduced activity during the hottest periods. This study demonstrates the utility of PIT tags and continuously operating autonomous detection systems for tracking fish at fine temporal scales, and improving estimates of demographic parameters in salt marsh creeks that are difficult or impractical to sample with active fishing gear.

Marine Ecology Progress Series↗

USGS2013

A novel approach to surveying sturgeon using side-scan sonar and occupancy modeling

Technological advances represent opportunities to enhance and supplement traditional fisheries sampling approaches. One example with growing importance for fisheries research is hydroacoustic technologies such as side-scan sonar. Advantages of side-scan sonar over traditional techniques include the ability to sample large areas efficiently and the potential to survey fish without physical handling-important for species of conservation concern, such as endangered sturgeons. Our objectives were to design an efficient survey methodology for sampling Atlantic Sturgeon Acipenser oxyrinchus by using side-scan sonar and to developmethods for analyzing these data. In North Carolina and South Carolina, we surveyed six rivers thought to contain varying abundances of sturgeon by using a combination of side-scan sonar, telemetry, and video cameras (i.e., to sample jumping sturgeon). Lower reaches of each river near the saltwater-freshwater interface were surveyed on three occasions (generally successive days), and we used occupancy modeling to analyze these data.We were able to detect sturgeon in five of six rivers by using these methods. Side-scan sonar was effective in detecting sturgeon, with estimated gear-specific detection probabilities ranging from 0.2 to 0.5 and river-specific occupancy estimates (per 2-km river segment) ranging from 0.0 to 0.8. Future extensions of this occupancy modeling framework will involve the use of side-scan sonar data to assess sturgeon habitat and abundance in different river systems.

North Carolina, South Carolina↗

USGS2013

A spatial capture-recapture model to estimate fish survival and location from linear continuous monitoring arrays

We developed a spatial capture–recapture model to evaluate survival and activity centres (i.e., mean locations) of tagged individuals detected along a linear array. Our spatially explicit version of the Cormack–Jolly–Seber model, analyzed using a Bayesian framework, correlates movement between periods and can incorporate environmental or other covariates. We demonstrate the model using 2010 data for anadromous American shad ( Alosa sapidissima ) tagged with passive integrated transponders (PIT) at a weir near the mouth of a North Carolina river and passively monitored with an upstream array of PIT antennas. The river channel constrained migrations, resulting in linear, one-dimensional encounter histories that included both weir captures and antenna detections. Individual activity centres in a given time period were a function of the individual’s previous estimated location and the river conditions (i.e., gage height). Model results indicate high within-river spawning mortality (mean weekly survival = 0.80) and more extensive movements during elevated river conditions. This model is applicable for any linear array (e.g., rivers, shorelines, and corridors), opening new opportunities to study demographic parameters, movement or migration, and habitat use.

North Carolina↗

USGS2013

Estimating reef fish discard mortality using surface and bottom tagging: effects of hook injury and barotrauma

We estimated survival rates of discarded black sea bass ( Centropristis striata ) in various release conditions using tag–recapture data. Fish were captured with traps and hook and line from waters 29–34 m deep off coastal North Carolina, USA, marked with internal anchor tags, and observed for release condition. Fish tagged on the bottom using SCUBA served as a control group. Relative return rates for trap-caught fish released at the surface versus bottom provided an estimated survival rate of 0.87 (95% credible interval 0.67–1.18) for surface-released fish. Adjusted for results from the underwater tagging experiment, fish with evidence of external barotrauma had a median survival rate of 0.91 (0.69–1.26) compared with 0.36 (0.17–0.67) for fish with hook trauma and 0.16 (0.08–0.30) for floating or presumably dead fish. Applying these condition-specific estimates of survival to non-tagging fishery data, we estimated a discard survival rate of 0.81 (0.62–1.11) for 11 hook and line data sets from waters 20–35 m deep and 0.86 (0.67–1.17) for 10 trap data sets from waters 11–29 m deep. The tag-return approach using a control group with no fishery-associated trauma represents a method to accurately estimate absolute discard survival of physoclistous reef species.

North Carolina↗

USGS2013

Seasonal variation in age-specific movement patterns of red drum Sciaenops ocellatus inferred from conventional tagging and telemetry

We used 25 years of conventional tagging (n = 6173 recoveries) and 3 years of ultrasonic telemetry data (n = 105 transmitters deployed) to examine movement rates and directional preferences of four age classes of red drum Sciaenops ocellatus in North Carolina. Movement rates of tagged red drum were dependent on the age, region, and season of tagging. Age-1 and age-2 red drum tagged along the coast generally moved along the coast, while fish tagged in oligohaline waters far from the coast were primarily recovered in coastal regions in fall months. Adult (age-4+) red drum moved from overwintering grounds on the continental shelf through inlets into Pamlico Sound in spring and summer months and departed in fall. Few tagged red drum were recovered in adjacent states (0.6% of all recoveries); however, some adult red drum migrated seasonally from overwintering grounds in coastal North Carolina northward to Virginia in spring, returning in fall. Telemetered age-2 red drum displayed seasonal emigration from a small tributary, but upstream and downstream movements within the tributary were correlated with fluctuating salinity regimes and not season. Large-scale tagging and telemetry programs can provide valuable insights into the complex movement patterns of estuarine fish.

Report↗

USGS2013

Estimating abundance of adult striped bass in reservoirs using mobile hydroacoustics

Hydroacoustic surveys have proven valuable for estimating reservoir forage fish abundance but are more challenging for adult predators such as striped bass Morone saxatilis. Difficulties in assessing striped bass in reservoirs include their low density and the inability to distinguish species with hydroacoustic data alone. Despite these difficulties, mobile hydroacoustic surveys have potential to provide useful data for management because of the large sample volume compared to traditional methods such as gill netting and the ability to target specific areas where striped bass are aggregated. Hydroacoustic estimates of reservoir striped bass have been made using mobile surveys, with data analysis using a threshold for target strength in order to focus on striped bass-sized targets, and auxiliary sampling with nets to obtain species composition. We provide recommendations regarding survey design, based in part on simulations that provide insight on the level of effort that would be required to achieve reasonable estimates of abundance. Future surveys may be able to incorporate telemetry or other sonar techniques such as side-scan or multibeam in order to focus survey efforts on productive habitats (within lake and vertically). However, species apportionment will likely remain the main source of error, and we see no hydroacoustic system on the horizon that will identify fish by species at the spatial and temporal scale required for most reservoir surveys. In situations where species composition can be reliably assessed using traditional gears, abundance estimates from hydroacoustic methods should be useful to fishery managers interested in developing harvest regulations, assessing survival of stocked juveniles, identifying seasonal aggregations, and examining predator–prey balance.

American Fisheries Society Symposium↗

USGS2013

Tagging methods for estimating population size and mortality rates of inland striped bass populations

Striped bass Morone saxatilis in inland reservoirs play an important role ecologically and in supporting recreational fishing. To manage these populations, biologists need information about abundance and mortality. Abundance estimates can be used to assess the effectiveness of stocking programs that maintain most reservoir striped bass populations. Mortality estimates can indicate the relative impact of fishing versus natural mortality and the need for harvest regulation. The purpose of this chapter is to evaluate tagging studies as a way of obtaining information about abundance and mortality. These approaches can be grouped into three broad categories: tag recapture, tag return, and telemetry. Tag-recapture methods are typically used to estimate population size and other demographic parameters but are often difficult to apply in large systems. A fishing tournament can be an effective way of generating tagging or recapture effort in large systems, compared to using research sampling only. Tag-return methods that rely on angler harvest and catch and release can be used to estimate fishing (F) and natural (M) mortality rates and are a practical approach in large reservoirs. The key to success in tag-return studies is to build in auxiliary studies to estimate short-term tagging mortality, short- and longterm tag loss, reporting rate, and mortality associated with catch and release. F and M can also be estimated using telemetry tags. Advantages of this approach are that angler nonreporting does not bias estimates and fish with transmitters provide useful ecological data. Cost can be a disadvantage of telemetry studies; thus, combining telemetry tags with conventional tag returns in an integrated analysis is often the optimal approach. In summary, tagging methods can be a powerful tool for assessing the effectiveness of inland striped bass stocking programs and the relative impact of fishing versus natural mortality

American Fisheries Society Symposium↗

USGS2012

Demographic population model for American shad: will access to additional habitat upstream of dams increase population sizes?

American shad Alosa sapidissima are in decline in their native range, and modeling possible management scenarios could help guide their restoration. We developed a density-dependent, deterministic, stage-based matrix model to predict the population-level results of transporting American shad to suitable spawning habitat upstream of dams on the Roanoke River, North Carolina and Virginia. We used data on sonic-tagged adult American shad and oxytetracycline-marked American shad fry both above and below dams on the Roanoke River with information from other systems to estimate a starting population size and vital rates. We modeled the adult female population over 30 years under plausible scenarios of adult transport, effective fecundity (egg production), and survival of adults (i.e., to return to spawn the next year) and juveniles (from spawned egg to age 1). We also evaluated the potential effects of increased survival for adults and juveniles. The adult female population size in the Roanoke River was estimated to be 5,224. With no transport, the model predicted a slow population increase over the next 30 years. Predicted population increases were highest when survival was improved during the first year of life. Transport was predicted to benefit the population only if high rates of effective fecundity and juvenile survival could be achieved. Currently, transported adults and young are less likely to successfully out-migrate than individuals below the dams, and the estimated adult population size is much smaller than either of two assumed values of carrying capacity for the lower river; therefore, transport is not predicted to help restore the stock under present conditions. Research on survival rates, density-dependent processes, and the impacts of structures to increase out-migration success would improve evaluation of the potential benefits of access to additional spawning habitat for American shad.

North Carolina, Virginia↗

USGS2012

Effect of low-head lock and dam structures on migration and spawning of American shad and striped bass in the Cape Fear River, North Carolina

Anadromous fish populations within the Cape Fear River, North Carolina, have declined substantially since the late 1800s. Three low-head lock-and-dam (LD) structures on the river (LD-1–3) contributed to this decline by limiting access to upstream spawning habitat. We used egg sampling and sonic telemetry to examine the effects of the LD structures on migration and spawning activity of American shad Alosa sapidissima and striped bass Morone saxatilis . Egg distribution and stage of development suggested that most of the American shad spawning took place downstream from the lowermost structure, LD-1. The predicted mean density of stage-1 American shad eggs at a water temperature of 21°C was 895 eggs/1,000 m 3 (95% credible interval [CI] = 800–994) below LD-1; 147 eggs/1,000 m 3 (95% CI = 103–197) below LD-2; and 32 eggs/1,000 m 3 (95% CI = 17–49) below the uppermost structure, LD-3. The probability of capturing a stage-1 American shad egg was strongly dependent on water temperature and hour of egg collection. Transmitter detections for 20 sonic-tagged American shad and 20 striped bass in 2008 showed that for both species, the majority of fish moved upstream of LD-1; 35% of American shad and 25% of striped bass migrated upstream of LD-3. Based on passage rates at the three LD structures, American shad would be expected to be most abundant downstream of LD-1 and upstream of LD-3. For striped bass, the river section between LD-2 and LD-3 had the highest egg collections and highest predicted proportion of the run. In combination, these results demonstrate that the locking program provides some access to historical spawning habitat, although further improvements in fish passage could benefit both species.

North Carolina↗

USGS2012

A Bayesian spawning habitat suitability model for American shad in southeastern United States rivers

Habitat suitability index models for American shad Alosa sapidissima were developed by Stier and Crance in 1985. These models, which were based on a combination of published information and expert opinion, are often used to make decisions about hydropower dam operations and fish passage. The purpose of this study was to develop updated habitat suitability index models for spawning American shad in the southeastern United States, building on the many field and laboratory studies completed since 1985. We surveyed biologists who had knowledge about American shad spawning grounds, assembled a panel of experts to discuss important habitat variables, and used raw data from published and unpublished studies to develop new habitat suitability curves. The updated curves are based on resource selection functions, which can model habitat selectivity based on use and availability of particular habitats. Using field data collected in eight rivers from Virginia to Florida (Mattaponi, Pamunkey, Roanoke, Tar, Neuse, Cape Fear, Pee Dee, St. Johns), we obtained new curves for temperature, current velocity, and depth that were generally similar to the original models. Our new suitability function for substrate was also similar to the original pattern, except that sand (optimal in the original model) has a very low estimated suitability. The Bayesian approach that we used to develop habitat suitability curves provides an objective framework for updating the model as new studies are completed and for testing the model's applicability in other parts of the species' range.

Florida, Georgia, North Carolina, South Carolina, ↗

USGS2011

Spawning habitat selection of hickory shad

We examined the spawning habitat selectivity of hickory shad Alosa mediocris , an anadromous species on the Atlantic coast of North America. Using plankton tows and artificial substrates (spawning pads), we collected hickory shad eggs in the Roanoke River, North Carolina, to identify spawning timing, temperature, and microhabitat use. Hickory shad eggs were collected by both sampling gears in March and April. The results from this and three other studies in North Carolina indicate that spawning peaks at water temperatures between 12.0°C and 14.9°C and that approximately 90% occurs between 11.0°C and 18.9°C. Hickory shad eggs were collected in run and riffle habitats. Water velocity and substrate were significantly different at spawning pads with eggs than at those without eggs, suggesting that these are important microhabitat factors for spawning. Hickory shad eggs were usually collected in velocities of at least 0.1 m/s and on all substrates except those dominated by silt. Eggs were most abundant on gravel, cobble, and boulder substrates. Hickory shad spawned further upstream in years when water discharge rates at Roanoke Rapids were approximately average during March and April (2005 and 2007), as compared with a severe drought year (2006), suggesting that water flows may affect not only spawning site selection but also the quantity and quality of spawning habitat available at a macrohabitat scale. Using our field data and a Bayesian approach to resource selection analysis, we developed a preliminary habitat suitability model for hickory shad. This Bayesian approach provides an objective framework for updating the model as future studies of hickory shad spawning habitat are conducted.

North Carolina↗

USGS2011

Movement and spawning of American shad transported above dams on the Roanoke River, North Carolina and Virginia

American shad Alosa sapidissima are in decline throughout much of their native range as a result of overfishing, pollution, and habitat alteration in coastal rivers where they spawn. One approach to restoration in regulated rivers is to provide access to historical spawning habitat above dams through a trap-and-transport program. We examined the initial survival, movement patterns, spawning, and downstream passage of sonic-tagged adult American shad transported to reservoir and riverine habitats upstream of hydroelectric dams on the Roanoke River, North Carolina and Virginia, during 2007–2009. Average survival to release in 2007–2008 was 85%, but survival decreased with increasing water temperature. Some tagged fish released in reservoirs migrated upstream to rivers; however, most meandered back and forth within the reservoir. A higher percentage of fish migrated through a smaller (8,215-ha) than a larger (20,234-ha) reservoir, suggesting that the population-level effects of transport may depend on upper basin characteristics. Transported American shad spent little time in upper basin rivers but were there when temperatures were appropriate for spawning. No American shad eggs were collected during weekly plankton sampling in upper basin rivers. The estimated initial survival of sonic-tagged American shad after downstream passage through each dam was 71–100%; however, only 1% of the detected fish migrated downstream through all three dams and many were relocated just upstream of a dam late in the season. Although adult American shad were successfully transported to upstream habitats in the Roanoke River basin, under present conditions transported individuals may have reduced effective fecundity and postspawning survival compared with nontransported fish that spawn in the lower Roanoke River.

North Carolina, Virginia↗