Geology topics

John W. Jones

Publications and source records attributed to John W. Jones.

At least 37 records · Page 2Linked to original sources

USGS2015

Efficient wetland surface water detection and monitoring via Landsat: Comparison with in situ data from the Everglades Depth Estimation Network

The U.S. Geological Survey is developing new Landsat science products. One, named Dynamic Surface Water Extent (DSWE), is focused on the representation of ground surface inundation as detected in cloud-/shadow-/snow-free pixels for scenes collected over the U.S. and its territories. Characterization of DSWE uncertainty to facilitate its appropriate use in science and resource management is a primary objective. A unique evaluation dataset developed from data made publicly available through the Everglades Depth Estimation Network (EDEN) was used to evaluate one candidate DSWE algorithm that is relatively simple, requires no scene-based calibration data, and is intended to detect inundation in the presence of marshland vegetation. A conceptual model of expected algorithm performance in vegetated wetland environments was postulated, tested and revised. Agreement scores were calculated at the level of scenes and vegetation communities, vegetation index classes, water depths, and individual EDEN gage sites for a variety of temporal aggregations. Landsat Archive cloud cover attribution errors were documented. Cloud cover had some effect on model performance. Error rates increased with vegetation cover. Relatively low error rates for locations of little/no vegetation were unexpectedly dominated by omission errors due to variable substrates and mixed pixel effects. Examined discrepancies between satellite and in situ modeled inundation demonstrated the utility of such comparisons for EDEN database improvement. Importantly, there seems no trend or bias in candidate algorithm performance as a function of time or general hydrologic conditions, an important finding for long-term monitoring. The developed database and knowledge gained from this analysis will be used for improved evaluation of candidate DSWE algorithms as well as other measurements made on Everglades surface inundation, surface water heights and vegetation using radar, lidar and hyperspectral instruments. Although no other sites have such an extensive in situ network or long-term records, the broader applicability of this and other candidate DSWE algorithms is being evaluated in other wetlands using this work as a guide. Continued interaction among DSWE producers and potential users will help determine whether the measured accuracies are adequate for practical utility in resource management.

Florida↗

USGS2015

Fire history of Everglades National Park and Big Cypress National Preserve, southern Florida

Fire occurs naturally in the environment on most continents, including Africa (Ryan and Williams, 2011), Asia (Kauhanen, 2008), Australia (Kutt and Woinarski, 2007), Europe (Eshel and others, 2000), South America (Fidelis and others, 2010), and North America (Van Auken, 2000). Antarctica appears to be the only continent that has no reported natural fires, although fire is common in grasslands of Patagonia and on islands in the Subantarctic region (Gonzalez and others, 2005; McGlone and others, 2007). Natural fires also have occurred over thousands of years, and the frequencies of these natural fires have changed (Power and others, 2008). This has resulted in altered ecosystems at landscape scales. Recent evidence suggests that the treeless desert pastures of Tibet once were forests and woodlands, and charcoal deposits indicate that fire was more frequent in the past (Miehe and others, 2006). Human cultural development has been influenced by changes in natural fire frequencies. Zong and others (2007) reported that human suppression of fires in coastal areas of China allowed the development of rice paddy cultivation and, thus, increased the size of human populations. In addition to its almost world-wide occurrence, fire plays a role in a wide variety of ecosystem types. Grassland, savanna, steppe, woodland, forest, and wetland ecosystems all have fire as part of their natural ecology (Veblen and Lorenz, 1988; Chokkalingam and others, 2007; Miller and others, 2009, Keith and others, 2010; Staver and others, 2011). Fires affect these ecosystems in various ways, the most obvious of which is the direct effect on plant biomass (for example, Van Wilgen, 1982; Mack and others, 2008). However, fire has many other effects on ecosystems. Plant species richness, diversity, and functional types can change in response to fire (Peterson and Reich, 2008). All properties of the surface soils (such as bulk density, particle size distribution, pH, and organic carbon and nitrogen content) can be altered by the frequency and severity of fire (Boerner and others, 2009). Faunal communities will respond to fire, with some species increasing (Fuhlendorf and others, 2006) and other species decreasing, after the fire (Vasconcelos and others, 2009).The position of the ecotone between differing ecosystems also is influenced by fire occurrence (Heisler and others, 2003; Briggs and others, 2005; Smith and others, 2013). Fire has been used as a management tool in various ecosystems around the world. Prairies, grasslands, and savannas are fire-maintained ecosystems where fire is used to deter invasion by shrubs and trees (Grant and others, 2009; Scheintaub and others, 2009). Similarly, fire plays an important role in woodlands and forests by influencing species composition and succession such, as the use of fire in coniferous forests to prevent encroachment by hardwoods (Phillippe and others, 2011). Fire also has been used to manage wetland ecosystems for more than 50 years (Lynch, 1941; Frost, 1995). Uses have included returning marshes to early successional states, increasing forage for wildlife (Lynch, 1941). In all fire-influenced ecosystems, prescribed burns are routinely used to reduce fuel loads, reducing the possibility of catastrophic fires.

Florida↗

USGS2014

Small reservoir distribution, rate of construction, and uses in the upper and middle Chattahoochee basins of the Georgia Piedmont, USA, 1950-2010

Construction of small reservoirs affects ecosystem processes in numerous ways including fragmenting stream habitat, altering hydrology, and modifying water chemistry. While the upper and middle Chattahoochee River basins within the Southeastern United States Piedmont contain few natural lakes, they have a high density of small reservoirs (more than 7500 small reservoirs in the nearly 12,000 km2 basin). Policymakers and water managers in the region have little information about small reservoir distribution, uses, or the cumulative inundation of land cover caused by small reservoir construction. Examination of aerial photography reveals the spatiotemporal patterns and extent of small reservoir construction from 1950 to 2010. Over that 60 year timeframe, the area inundated by water increased nearly six fold (from 19 reservoirs covering 0.16% of the study area in 1950 to 329 reservoirs covering 0.95% of the study area in 2010). While agricultural practices were associated with reservoir creation from 1950 to 1970, the highest rates of reservoir construction occurred during subsequent suburban development between 1980 and 1990. Land cover adjacent to individual reservoirs transitioned over time through agricultural abandonment, land reforestation, and conversion to development during suburban expansion. The prolific rate of ongoing small reservoir creation, particularly in newly urbanizing regions and developing counties, necessitates additional attention from watershed managers and continued scientific research into cumulative environmental impacts at the watershed scale.

Georgia↗

USGS2014

Monitoring Everglades freshwater marsh water level using L-band synthetic aperture radar backscatter

The Florida Everglades plays a significant role in controlling floods, improving water quality, supporting ecosystems, and maintaining biodiversity in south Florida. Adaptive restoration and management of the Everglades requires the best information possible regarding wetland hydrology. We developed a new and innovative approach to quantify spatial and temporal variations in wetland water levels within the Everglades, Florida. We observed high correlations between water level measured at in situ gages and L-band SAR backscatter coefficients in the freshwater marsh, though C-band SAR backscatter has no close relationship with water level. Here we illustrate the complementarity of SAR backscatter coefficient differencing and interferometry (InSAR) for improved estimation of high spatial resolution water level variations in the Everglades. This technique has a certain limitation in applying to swamp forests with dense vegetation cover, but we conclude that this new method is promising in future applications to wetland hydrology research.

Florida↗

USGS2013

Dynamics of mangrove-marsh ecotones in subtropical coastal wetlands: fire, sea-level rise, and water levels

Ecotones are areas of sharp environmental gradients between two or more homogeneous vegetation types. They are a dynamic aspect of all landscapes and are also responsive to climate change. Shifts in the position of an ecotone across a landscape can be an indication of a changing environment. In the coastal Everglades of Florida, USA, a dominant ecotone type is that of mangrove forest and marsh. However, there is a variety of plants that can form the marsh component, including sawgrass (Cladium mariscus [L.] Pohl), needlegrass rush (Juncus roemerianus Scheele), and spikerush (Eleocharis spp.). Environmental factors including water depth, soil type, and occurrence of fires vary across these ecotones, influencing their dynamics. Altered freshwater inflows from upstream and increasing sea level over the past 100 years may have also had an impact. We analyzed a time series of historical aerial photographs for a number of sites in the coastal Everglades and measured change in position of mangrove–marsh ecotones. For three sites, detailed maps were produced and the area of marsh, mangrove, and other habitats was determined for five periods spanning the years 1928 to 2004. Contrary to our initial hypothesis on fire, we found that fire did not prevent mangrove expansion into marsh areas but may in fact assist mangroves to invade some marsh habitats, especially sawgrass. Disparate patterns in mangrove–marsh change were measured at two downstream sites, both of which had multiple fires over from 1948 to 2004. No change in mangrove or marsh area was measured at one site. Mangrove area increased and marsh area decreased at the second of these fire-impacted sites. We measured a significant increase in mangrove area and a decline in marsh area at an upstream site that had little occurrence of fire. At this site, water levels have increased significantly as sea level has risen, and this has probably been a factor in the mangrove expansion.

Florida↗

USGS2013

Wetland fire scar monitoring and analysis using archival Landsat data for the Everglades

The ability to document the frequency, extent, and severity of fires in wetlands, as well as the dynamics of post-fire wetland land cover, informs fire and wetland science, resource management, and ecosystem protection. Available information on Everglades burn history has been based on field data collection methods that evolved through time and differ by land management unit. Our objectives were to (1) design and test broadly applicable and repeatable metrics of not only fire scar delineation but also post-fire land cover dynamics through exhaustive use of the Landsat satellite data archives, and then (2) explore how those metrics relate to various hydrologic and anthropogenic factors that may influence post-fire land cover dynamics. Visual interpretation of every Landsat scene collected over the study region during the study time frame produced a new, detailed database of burn scars greater than 1.6 ha in size in the Water Conservation Areas and post-fire land cover dynamics for Everglades National Park fires greater than 1.6 ha in area. Median burn areas were compared across several landscape units of the Greater Everglades and found to differ as a function of administrative unit and fire history. Some burned areas transitioned to open water, exhibiting water depths and dynamics that support transition mechanisms proposed in the literature. Classification tree techniques showed that time to green-up and return to pre-burn character were largely explained by fire management practices and hydrology. Broadly applicable as they use data from the global, nearly 30-year-old Landsat archive, these methods for documenting wetland burn extent and post-fire land cover change enable cost-effective collection of new data on wetland fire ecology and independent assessment of fire management practice effectiveness.

Florida↗

USGS2013

Application of the Precipitation-Runoff Modeling System (PRMS) in the Apalachicola-Chattahoochee-Flint River Basin in the southeastern United States

A hydrologic model of the Apalachicola–Chattahoochee–Flint River Basin (ACFB) has been developed as part of a U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center effort to provide integrated science that helps resource managers understand the effect of climate change on a range of ecosystem responses. The hydrologic model was developed as part of the Southeast Regional Assessment Project using the Precipitation Runoff Modeling System (PRMS), a deterministic, distributed-parameter, process-based system that simulates the effects of precipitation, temperature, and land use on basin hydrology. The ACFB PRMS model simulates streamflow throughout the approximately 50,700 square-kilometer basin on a daily time step for the period 1950–99 using gridded climate forcings of air temperature and precipitation, and parameters derived from spatial data layers of altitude, land cover, soils, surficial geology, depression storage (small water bodies), and data from 56 USGS streamgages. Measured streamflow data from 35 of the 56 USGS streamgages were used to calibrate and evaluate simulated basin streamflow; the remaining gage locations were used for model delineation only. The model matched measured daily streamflow at 31 of the 35 calibration gages with Nash-Sutcliffe Model Efficiency Index (NS) greater than 0.6. Streamflow data for some calibration gages were augmented for regulation and water use effects to represent more natural flow volumes. Time-static parameters describing land cover limited the ability of the simulation to match historical runoff in the more developed subbasins. Overall, the PRMS simulation of the ACFB provides a good representation of basin hydrology on annual and monthly time steps. Calibration subbasins were analyzed by separating the 35 subbasins into five classes based on physiography, land use, and stream type (tributary or mainstem). The lowest NS values were rarely below 0.6, whereas the median NS for all five classes was within 0.74 to 0.96 for annual mean streamflow, 0.89 to 0.98 for mean monthly streamflow, and 0.82 to 0.98 for monthly mean streamflow. The median bias for all five classes was within –4.3 to 0.8 percent for annual mean streamflow, –6.3 to 0.5 percent for mean monthly streamflow, and –9.3 to 1.3 percent for monthly mean streamflow. The NS results combined with the percent bias results indicated a good to very good streamflow volume simulation for all subbasins. This simulation of the ACFB provides a foundation for future modeling and interpretive studies. Streamflow and other components of the hydrologic cycle simulated by PRMS can be used to inform other types of simulations; water-temperature, hydrodynamic, and ecosystem-dynamics simulations are three examples. In addition, possible future hydrologic conditions could be studied using this model in combination with land cover projections and downscaled general circulation model results.

Alabama, Florida, Georgia↗

USGS2012

Linking river management to species conservation using dynamic landscape scale models

Efforts to conserve stream and river biota could benefit from tools that allow managers to evaluate landscape-scale changes in species distributions in response to water management decisions. We present a framework and methods for integrating hydrology, geographic context and metapopulation processes to simulate effects of changes in streamflow on fish occupancy dynamics across a landscape of interconnected stream segments. We illustrate this approach using a 482 km 2 catchment in the southeastern US supporting 50 or more stream fish species. A spatially distributed, deterministic and physically based hydrologic model is used to simulate daily streamflow for sub-basins composing the catchment. We use geographic data to characterize stream segments with respect to channel size, confinement, position and connectedness within the stream network. Simulated streamflow dynamics are then applied to model fish metapopulation dynamics in stream segments, using hypothesized effects of streamflow magnitude and variability on population processes, conditioned by channel characteristics. The resulting time series simulate spatially explicit, annual changes in species occurrences or assemblage metrics (e.g. species richness) across the catchment as outcomes of management scenarios. Sensitivity analyses using alternative, plausible links between streamflow components and metapopulation processes, or allowing for alternative modes of fish dispersal, demonstrate large effects of ecological uncertainty on model outcomes and highlight needed research and monitoring. Nonetheless, with uncertainties explicitly acknowledged, dynamic, landscape-scale simulations may prove useful for quantitatively comparing river management alternatives with respect to species conservation.

Georgia↗

USGS2012

Wetland fire remote sensing research--The Greater Everglades example

Fire is a major factor in the Everglades ecosystem. For thousands of years, lightning-strike fires from summer thunderstorms have helped create and maintain a dynamic landscape suited both to withstand fire and recover quickly in the wake of frequent fires. Today, managers in the Everglades National Park are implementing controlled burns to promote healthy, sustainable vegetation patterns and ecosystem functions. The U.S. Geological Survey (USGS) is using remote sensing to improve fire-management databases in the Everglades, gain insights into post-fire land-cover dynamics, and develop spatially and temporally explicit fire-scar data for habitat and hydrologic modeling.

Florida↗

USGS2011

Hydrologic effects of urbanization and climate change on the Flint River Basin, Georgia

The potential effects of long-term urbanization and climate change on the freshwater resources of the Flint River basin were examined by using the Precipitation-Runoff Modeling System (PRMS). PRMS is a deterministic, distributed-parameter watershed model developed to evaluate the effects of various combinations of precipitation, temperature, and land cover on streamflow and multiple intermediate hydrologic states. Precipitation and temperature output from five general circulation models (GCMs) using one current and three future climate-change scenarios were statistically downscaled for input into PRMS. Projections of urbanization through 2050 derived for the Flint River basin by the Forecasting Scenarios of Future Land-Cover (FORE-SCE) land-cover change model were also used as input to PRMS. Comparison of the central tendency of streamflow simulated based on the three climate-change scenarios showed a slight decrease in overall streamflow relative to simulations under current conditions, mostly caused by decreases in the surface- runoff and groundwater components. The addition of information about forecasted urbanization of land surfaces to the hydrologic simulation mitigated the decreases in streamflow, mainly by increasing surface runoff.

Georgia↗

USGS2011

Landscape unit based digital elevation model development for the freshwater wetlands within the Arthur C. Marshall Loxahatchee National Wildlife Refuge, Southeastern Florida

The hydrologic regime is a critical limiting factor in the delicate ecosystem of the greater Everglades freshwater wetlands in south Florida that has been severely altered by management activities in the past several decades. "Getting the water right" is regarded as the key to successful restoration of this unique wetland ecosystem. An essential component to represent and model its hydrologic regime, specifically water depth, is an accurate ground Digital Elevation Model (DEM). The Everglades Depth Estimation Network (EDEN) supplies important hydrologic data, and its products (including a ground DEM) have been well received by scientists and resource managers involved in Everglades restoration. This study improves the EDEN DEMs of the Loxahatchee National Wildlife Refuge, also known as Water Conservation Area 1 (WCA1), by adopting a landscape unit (LU) based interpolation approach. The study first filtered the input elevation data based on newly available vegetation data, and then created a separate geostatistical model (universal kriging) for each LU. The resultant DEMs have encouraging cross-validation and validation results, especially since the validation is based on an independent elevation dataset (derived by subtracting water depth measurements from EDEN water surface elevations). The DEM product of this study will directly benefit hydrologic and ecological studies as well as restoration efforts. The study will also be valuable for a broad range of wetland studies.

Florida↗

USGS2011

Geology for a changing world 2010-2020-Implementing the U.S. Geological Survey science strategy

This report describes a science strategy for the geologic activities of the U.S. Geological Survey (USGS) for the years 2010-2020. It presents six goals with accompanying strategic actions and products that implement the science directions of USGS Circular 1309, 'Facing Tomorrow's Challenges-U.S. Geological Survey Science in the Decade 2007-2017.' These six goals focus on providing the geologic underpinning needed to wisely use our natural resources, understand and mitigate hazards and environmental change, and understand the relationship between humans and the environment. The goals emphasize the critical role of the USGS in providing long-term research, monitoring, and assessments for the Nation and the world. Further, they describe measures that must be undertaken to ensure geologic expertise and knowledge for the future. The natural science issues facing today's world are complex and cut across many scientific disciplines. The Earth is a system in which atmosphere, oceans, land, and life are all connected. Rocks and soils contain the answers to important questions about the origin of energy and mineral resources, the evolution of life, climate change, natural hazards, ecosystem structures and functions, and the movements of nutrients and toxicants. The science of geology has the power to help us understand the processes that link the physical and biological world so that we can model and forecast changes in the system. Ensuring the success of this strategy will require integration of geological knowledge with the other natural sciences and extensive collaboration across USGS science centers and with partners in Federal, State, and local agencies, academia, industry, nongovernmental organizations and, most importantly, the American public. The first four goals of this report describe the scientific issues facing society in the next 10 years and the actions and products needed to respond to these issues. The final two goals focus on the expertise and infrastructure needed to ensure the long-term sustainability of the geological sciences in the USGS. The ultimate goal of USGS science and of the strategy laid out in this document is to contribute to the development of a sustainable society that operates in harmony with the Earth systems that society depends upon. As we begin the second decade of the 21st century, our Nation faces growing challenges in resource availability, climate and environmental change, and natural hazards. Meeting these challenges will require strong collaboration across the natural and social sciences and extensive partnerships with both the public and private sectors. The six goals described in this document represent a mix of scientific focus areas and operational necessities that together provide a comprehensive roadmap for USGS geologic science to effectively contribute to the USGS mission, providing science for a changing world.

Circular↗

USGS2010

Shenandoah National Park Phenology Project-Weather data collection, description, and processing

The weather data described in this document are being collected as part of a U.S. Geological Survey (USGS) study of changes in Shenandoah National Park (SNP) landscape phenology (Jones and Osbourne, 2008). Phenology is the study of the timing of biological events, such as annual plant flowering and seasonal bird migration. These events are partially driven by changes in temperature and precipitation; therefore, phenology studies how these events may reflect changes in climate. Landscape phenology is the study of changes in biological events over broad areas and assemblages of vegetation. To study climate-change relations over broad areas (at landscape scale), the timing and amount of annual tree leaf emergence, maximum foliage, and leaf fall for forested areas are of interest. To better link vegetation changes with climate, weather data are necessary. This report documents weather-station data collection and processing procedures used in the Shenandoah National Park Phenology Project.

Open-File Report↗

USGS2010

Effects of including surface depressions in the application of the Precipitation-Runoff Modeling System in the Upper Flint River Basin, Georgia

This report documents an extension of the Precipitation Runoff Modeling System that accounts for the effect of a large number of water-holding depressions in the land surface on the hydrologic response of a basin. Several techniques for developing the inputs needed by this extension also are presented. These techniques include the delineation of the surface depressions, the generation of volume estimates for the surface depressions, and the derivation of model parameters required to describe these surface depressions. This extension is valuable for applications in basins where surface depressions are too small or numerous to conveniently model as discrete spatial units, but where the aggregated storage capacity of these units is large enough to have a substantial effect on streamflow. In addition, this report documents several new model concepts that were evaluated in conjunction with the depression storage functionality, including: ?hydrologically effective? imperviousness, rates of hydraulic conductivity, and daily streamflow routing. All of these techniques are demonstrated as part of an application in the Upper Flint River Basin, Georgia. Simulated solar radiation, potential evapotranspiration, and water balances match observations well, with small errors for the first two simulated data in June and August because of differences in temperatures from the calibration and evaluation periods for those months. Daily runoff simulations show increasing accuracy with streamflow and a good fit overall. Including surface depression storage in the model has the effect of decreasing daily streamflow for all but the lowest flow values. The report discusses the choices and resultant effects involved in delineating and parameterizing these features. The remaining enhancements to the model and its application provide a more realistic description of basin geography and hydrology that serve to constrain the calibration process to more physically realistic parameter values.

Georgia↗

USGS2008

Detecting Evidence of Climate Change in the Forests of the Eastern United States

Changes in land use or disturbances such as defoliation by insects, disease, or fire all affect the composition and amount of tree canopy in a forest. These changes are easy to detect. Noticing and understanding the complex ways that global or regional-scale climate change combines with these disturbances to affect forest growth patterns and succession is difficult. This is particularly true for regions where changes in climate are not the most extreme, such as the mid-latitude forests of the Eastern United States. If land and water resources are to be managed responsibly, it is important to know how well the impacts of climate change on these forests can be measured in order to provide the best information possible to respond to any future changes. The goal of this study is to test whether climate-induced changes in forests in the Eastern United States can be detected and characterized using satellite imagery.

Fact Sheet↗

USGS2008

Advanced Remote Sensing Research

'Remote sensing' is a generic term for monitoring techniques that collect information without being in physical contact with the object of study. Overhead imagery from aircraft and satellite sensors provides the most common form of remotely sensed data and records the interaction of electromagnetic energy (usually visible light) with matter, such as the Earth's surface. Remotely sensed data are fundamental to geographic science. The Eastern Geographic Science Center (EGSC) of the U.S. Geological Survey (USGS) is currently conducting and promoting the research and development of three different aspects of remote sensing science: spectral analysis, automated orthorectification of historical imagery, and long wave infrared (LWIR) polarimetric imagery (PI).

Fact Sheet↗

USGS2007

Conceptual design of the Everglades Depth Estimation Network (EDEN) grid

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). Ground elevation data for the greater Everglades and the digital ground elevation models derived from them form the foundation for all EDEN water depth and associated ecologic/hydrologic modeling (Jones, 2004, Jones and Price, 2007). To use EDEN water depth and duration information most effectively, it is important to be able to view and manipulate information on elevation data quality and other land cover and habitat characteristics across the Everglades region. These requirements led to the development of the geographic data layer described in this techniques and methods report. Relying on extensive experience in GIS data development, distribution, and analysis, a great deal of forethought went into the design of the geographic data layer used to index elevation and other surface characteristics for the Greater Everglades region. To allow for simplicity of design and use, the EDEN area was broken into a large number of equal-sized rectangles ('Cells') that in total are referred to here as the 'grid'. Some characteristics of this grid, such as the size of its cells, its origin, the area of Florida it is designed to represent, and individual grid cell identifiers, could not be changed once the grid database was developed. Therefore, these characteristics were selected to design as robust a grid as possible and to ensure the grid's long-term utility. It is desirable to include all pertinent information known about elevation and elevation data collection as grid attributes. Also, it is very important to allow for efficient grid post-processing, sub-setting, analysis, and distribution. This document details the conceptual design of the EDEN grid spatial parameters and cell attribute-table content.

Florida↗

USGS2007

Initial Everglades Depth Estimation Network (EDEN) digital elevation model research and development

Florida↗