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John H. Powell

Publications and source records attributed to John H. Powell.

3 recordsLinked to original sources

Integrating data on a mixed stock anadromous fishery to estimate stock-specific escapement and mortalities

Objective Anadromous fisheries can affect stocks with differing management objectives. Understanding the effects of fisheries on individual stocks by quantifying final dispositions, including escapement and mortalities, is important for sustainable fishery management. Our objectives were to extend an existing management model that is used to evaluate final stock dispositions to estimate confidence intervals and to generalize the model so that it could be applied in other systems. Methods An annual run reconstruction model for estimating final dispositions of Snake River steelhead Oncorhynchus mykiss was previously developed to evaluate mortalities and escapement for each stock. We extended and generalized this model in two ways: (1) to propagate uncertainty using Monte Carlo simulation and (2) to fit the model using maximum likelihood methods. We generated confidence intervals and conducted sensitivity analyses to evaluate sources of uncertainty. Results The Monte Carlo version of the model explicitly propagates uncertainty in inputs through to model predictions, whereas the maximum likelihood version includes additional data sources, such as catch composition and escapement. We estimated disposition metrics for Snake River steelhead using the original formulation, Monte Carlo version, and the maximum likelihood version for the 2018–2019 season, and we found that the results were similar but that the maximum likelihood version provided a better fit to the observed data. Conclusions We demonstrate how to account for uncertainty when synthesizing several kinds of monitoring data. Improved characterizations of uncertainty facilitate better decision making about future data collection and fisheries management.

North American Journal of Fisheries Management

The population history of endogenous retroviruses in mule deer (Odocoileus heminous)

Mobile elements are powerful agents of genomic evolution and can be exceptionally informative markers for investigating species and population-level evolutionary history. While several studies have utilized retrotransposon-based insertional polymorphisms to resolve phylogenies, few population studies exist outside of humans. Endogenous retroviruses are LTR-retrotransposons derived from retroviruses that have become stably integrated in the host genome during past infections and transmitted vertically to subsequent generations. They offer valuable insight into host-virus co-evolution and a unique perspective on host evolutionary history because they integrate into the genome at a discrete point in time. We examined the evolutionary history of a cervid endogenous gammaretrovirus (CrERVγ) in mule deer ( Odocoileus hemionus ). We sequenced 14 CrERV proviruses (CrERV-in1 to -in14), and examined the prevalence and distribution of 13 proviruses in 262 deer among 15 populations from Montana, Wyoming, and Utah. CrERV absence in white-tailed deer ( O. virginianus ), identical 5′ and 3′ long terminal repeat (LTR) sequences, insertional polymorphism, and CrERV divergence time estimates indicated that most endogenization events occurred within the last 200000 years. Population structure inferred from CrERVs (F ST = 0.008) and microsatellites (θ = 0.01) was low, but significant, with Utah, northwestern Montana, and a Helena herd being particularly differentiated. Clustering analyses indicated regional structuring, and non-contiguous clustering could often be explained by known translocations. Cluster ensemble results indicated spatial localization of viruses, specifically in deer from northeastern and western Montana. This study demonstrates the utility of endogenous retroviruses to elucidate and provide novel insight into both ERV evolutionary history and the history of contemporary host populations.

Montana;Utah;Wyoming

Microsatellites indicate minimal barriers to mule deer Odocoileus hemionus dispersal across Montana, USA

To better understand the future spread of chronic wasting disease, we conducted a genetic assessment of mule deer Odocoileus hemionus population structure across the state of Montana, USA. Individual based analyses were used to test for population structure in the absence of a priori designations of population membership across the sampling area. Samples from the states of Wyoming, Colorado and Utah were also included in the analysis to provide a geographic context to the levels of population structure observed within Montana. Results showed that mule deer across our entire study region were characterized by weak isolation by distance and a lack of spatial autocorrelation at distances > 10 km. We found evidence for contemporary male bias in dispersal, with female mule deer exhibiting higher mean individual pairwise genetic distance than males. We tested for potential homogenizing effects of past translocations within Montana, but were unable to detect a genetic signature of these events. Our results indicate high levels of connectivity among mule deer populations in Montana and suggest few, if any, detectable barriers to mule deer gene flow or chronic wasting disease transmission.

Wildlife Biology