Geology topics

Jiquan Chen

Publications and source records attributed to Jiquan Chen.

10 recordsLinked to original sources

USGS2025

Network of networks: Time series clustering of AmeriFlux sites

Environmental observation networks, such as AmeriFlux, are foundational for monitoring ecosystem response to climate change, management practices, and natural disturbances; however, their effectiveness depends on their representativeness for the regions or continents. We proposed an empirical, time series approach to quantify the similarity of ecosystem fluxes across AmeriFlux sites. We extracted the diel and seasonal characteristics (i.e., amplitudes, phases) from carbon dioxide, water vapor, energy, and momentum fluxes, which reflect the effects of climate, plant phenology, and ecophysiology on the observations, and explored the potential aggregations of AmeriFlux sites through hierarchical clustering. While net radiation and temperature showed latitudinal clustering as expected, flux variables revealed a more uneven clustering with many small (number of sites < 5), unique groups and a few large (> 100) to intermediate (15–70) groups, highlighting the significant ecological regulations of ecosystem fluxes. Many identified unique groups were from under-sampled ecoregions and biome types of the International Geosphere-Biosphere Programme (IGBP), with distinct flux dynamics compared to the rest of the network. At the finer spatial scale, local topography, disturbance, management, edaphic, and hydrological regimes further enlarge the difference in flux dynamics within the groups. Nonetheless, our clustering approach is a data-driven method to interpret the AmeriFlux network, informing future cross-site syntheses, upscaling, and model-data benchmarking research. Finally, we highlighted the unique and underrepresented sites in the AmeriFlux network, which were found mainly in Hawaii and Latin America, mountains, and at under-sampled IGBP types (e.g., urban, open water), motivating the incorporation of new/unregistered sites from these groups.

Agricultural and Forest Meteorology↗

USGS2023

Upscaling wetland methane emissions from the FLUXNET-CH4 Eddy Covariance Network (UpCH4 v1.0): Model development, network assessment, and budget comparison

Wetlands are responsible for 20%–31% of global methane (CH 4 ) emissions and account for a large source of uncertainty in the global CH 4 budget. Data-driven upscaling of CH 4 fluxes from eddy covariance measurements can provide new and independent bottom-up estimates of wetland CH 4 emissions. Here, we develop a six-predictor random forest upscaling model (UpCH4), trained on 119 site-years of eddy covariance CH 4 flux data from 43 freshwater wetland sites in the FLUXNET-CH4 Community Product. Network patterns in site-level annual means and mean seasonal cycles of CH 4 fluxes were reproduced accurately in tundra, boreal, and temperate regions (Nash-Sutcliffe Efficiency ∼0.52–0.63 and 0.53). UpCH4 estimated annual global wetland CH 4 emissions of 146 ± 43 TgCH 4 y −1 for 2001–2018 which agrees closely with current bottom-up land surface models (102–181 TgCH 4 y −1 ) and overlaps with top-down atmospheric inversion models (155–200 TgCH 4 y −1 ). However, UpCH4 diverged from both types of models in the spatial pattern and seasonal dynamics of tropical wetland emissions. We conclude that upscaling of eddy covariance CH 4 fluxes has the potential to produce realistic extra-tropical wetland CH 4 emissions estimates which will improve with more flux data. To reduce uncertainty in upscaled estimates, researchers could prioritize new wetland flux sites along humid-to-arid tropical climate gradients, from major rainforest basins (Congo, Amazon, and SE Asia), into monsoon (Bangladesh and India) and savannah regions (African Sahel) and be paired with improved knowledge of wetland extent seasonal dynamics in these regions. The monthly wetland methane products gridded at 0.25° from UpCH4 are available via ORNL DAAC ( https://doi.org/10.3334/ORNLDAAC/2253 ).

AGU Advances↗

USGS2023

Biophysical drivers for predicting the distribution and abundance of invasive yellow sweetclover in the Northern Great Plains

Context Yellow sweetclover ( Melilotus officinalis ; YSC) is an invasive biennial legume that bloomed across the Northern Great Plains in 2018–2019 in response to above-average precipitation. YSC can increase nitrogen (N) levels and potentially cause substantial changes in the composition of native plant species communities. There is little knowledge of the spatiotemporal variability and conditions causing substantial widespread blooms of YSC across western South Dakota (SD). Objectives We aimed to develop a generalized prediction model to predict the relative abundance of YSC in suitable habitats across rangelands of western South Dakota for 2019. Our research questions are: (1) What is the spatial extent of YSC across western South Dakota? (2) Which model can accurately predict the habitat and percent cover of YSC? and (3) What significant biophysical drivers affect its presence across western South Dakota? Methods We trained machine learning models with in situ data (2016–2021), Sentinel 2A-derived surface reflectance and indices (10 m, 20 m) and site-specific variables of climate, topography, and edaphic factors to optimize model performance. Results We identified moisture proxies (Shortwave Infrared reflectance and variability in Tasseled Cap Wetness) as the important predictors to explain the YSC presence. Land Surface Water Index and variability in summer temperature were the top predictors in explaining the YSC abundance. We demonstrated how machine learning algorithms could help generate valuable information on the spatial distribution of this invasive plant. We delineated major YSC hotspots in Butte, Pennington, and Corson Counties of South Dakota. The floodplains of major rivers, including White and Bad Rivers, and areas around Badlands National Park also showed a higher occurrence probability and cover percentage. Conclusions These prediction maps could aid land managers in devising management strategies for the regions that are prone to YSC outbreaks. The management workflow can also serve as a prototype for mapping other invasive plant species in similar regions.

Montana, North Dakota, South Dakota, Wyoming↗

USGS2023

Modeled production, oxidation, and transport processes of wetland methane emissions in temperate, boreal, and Arctic regions

Wetlands are the largest natural source of methane (CH 4 ) to the atmosphere. The eddy covariance method provides robust measurements of net ecosystem exchange of CH 4 , but interpreting its spatiotemporal variations is challenging due to the co-occurrence of CH 4 production, oxidation, and transport dynamics. Here, we estimate these three processes using a data-model fusion approach across 25 wetlands in temperate, boreal, and Arctic regions. Our data-constrained model—iPEACE—reasonably reproduced CH 4 emissions at 19 of the 25 sites with normalized root mean square error of 0.59, correlation coefficient of 0.82, and normalized standard deviation of 0.87. Among the three processes, CH 4 production appeared to be the most important process, followed by oxidation in explaining inter-site variations in CH 4 emissions. Based on a sensitivity analysis, CH 4 emissions were generally more sensitive to decreased water table than to increased gross primary productivity or soil temperature. For periods with leaf area index (LAI) of ≥20% of its annual peak, plant-mediated transport appeared to be the major pathway for CH 4 transport. Contributions from ebullition and diffusion were relatively high during low LAI (<20%) periods. The lag time between CH 4 production and CH 4 emissions tended to be short in fen sites (3 ± 2 days) and long in bog sites (13 ± 10 days). Based on a principal component analysis, we found that parameters for CH 4 production, plant-mediated transport, and diffusion through water explained 77% of the variance in the parameters across the 19 sites, highlighting the importance of these parameters for predicting wetland CH 4 emissions across biomes. These processes and associated parameters for CH 4 emissions among and within the wetlands provide useful insights for interpreting observed net CH 4 fluxes, estimating sensitivities to biophysical variables, and modeling global CH 4 fluxes.

Global Change Biology↗

USGS2022

Causality guided machine learning model on wetland CH4 emissions across global wetlands

Wetland CH 4 emissions are among the most uncertain components of the global CH 4 budget. The complex nature of wetland CH 4 processes makes it challenging to identify causal relationships for improving our understanding and predictability of CH 4 emissions. In this study, we used the flux measurements of CH 4 from eddy covariance towers (30 sites from 4 wetlands types: bog, fen, marsh, and wet tundra) to construct a causality-constrained machine learning (ML) framework to explain the regulative factors and to capture CH 4 emissions at sub-seasonal scale. We found that soil temperature is the dominant factor for CH 4 emissions in all studied wetland types. Ecosystem respiration (CO 2 ) and gross primary productivity exert controls at bog, fen, and marsh sites with lagged responses of days to weeks. Integrating these asynchronous environmental and biological causal relationships in predictive models significantly improved model performance. More importantly, modeled CH 4 emissions differed by up to a factor of 4 under a +1°C warming scenario when causality constraints were considered. These results highlight the significant role of causality in modeling wetland CH 4 emissions especially under future warming conditions, while traditional data-driven ML models may reproduce observations for the wrong reasons. Our proposed causality-guided model could benefit predictive modeling, large-scale upscaling, data gap-filling, and surrogate modeling of wetland CH 4 emissions within earth system land models.

Agricultural and Forest Meteorology↗

USGS2021

FLUXNET-CH4: A global, multi-ecosystem database and analysis of methane seasonality from freshwater wetlands

Methane (CH 4 ) emissions from natural landscapes constitute roughly half of global CH 4 contributions to the atmosphere, yet large uncertainties remain in the absolute magnitude and the seasonality of emission quantities and drivers. Eddy covariance (EC) measurements of CH 4 flux are ideal for constraining ecosystem-scale CH 4 emissions due to quasi-continuous and high-temporal-resolution CH 4 flux measurements, coincident carbon dioxide, water, and energy flux measurements, lack of ecosystem disturbance, and increased availability of datasets over the last decade. Here, we (1) describe the newly published dataset, FLUXNET-CH 4 Version 1.0, the first open-source global dataset of CH 4 EC measurements (available at https://fluxnet.org/data/fluxnet-ch4-community-product/ , last access: 7 April 2021). FLUXNET-CH 4 includes half-hourly and daily gap-filled and non-gap-filled aggregated CH 4 fluxes and meteorological data from 79 sites globally: 42 freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drained ecosystems, 7 rice paddy sites, 2 lakes, and 15 uplands. Then, we (2) evaluate FLUXNET-CH 4 representativeness for freshwater wetland coverage globally because the majority of sites in FLUXNET-CH 4 Version 1.0 are freshwater wetlands which are a substantial source of total atmospheric CH 4 emissions; and (3) we provide the first global estimates of the seasonal variability and seasonality predictors of freshwater wetland CH 4 fluxes. Our representativeness analysis suggests that the freshwater wetland sites in the dataset cover global wetland bioclimatic attributes (encompassing energy, moisture, and vegetation-related parameters) in arctic, boreal, and temperate regions but only sparsely cover humid tropical regions. Seasonality metrics of wetland CH 4 emissions vary considerably across latitudinal bands. In freshwater wetlands (except those between 20 ∘ S to 20 ∘ N) the spring onset of elevated CH 4 emissions starts 3 d earlier, and the CH 4 emission season lasts 4 d longer, for each degree Celsius increase in mean annual air temperature. On average, the spring onset of increasing CH 4 emissions lags behind soil warming by 1 month, with very few sites experiencing increased CH 4 emissions prior to the onset of soil warming. In contrast, roughly half of these sites experience the spring onset of rising CH 4 emissions prior to the spring increase in gross primary productivity (GPP). The timing of peak summer CH 4 emissions does not correlate with the timing for either peak summer temperature or peak GPP. Our results provide seasonality parameters for CH 4 modeling and highlight seasonality metrics that cannot be predicted by temperature or GPP (i.e., seasonality of CH 4 peak). FLUXNET-CH 4 is a powerful new resource for diagnosing and understanding the role of terrestrial ecosystems and climate drivers in the global CH 4 cycle, and future additions of sites in tropical ecosystems and site years of data collection will provide added value to this database. All seasonality parameters are available at https://doi.org/10.5281/zenodo.4672601 (Delwiche et al., 2021). Additionally, raw FLUXNET-CH 4 data used to extract seasonality parameters can be downloaded from https://fluxnet.org/data/fluxnet-ch4-community-product/ (last access: 7 April 2021), and a complete list of the 79 individual site data DOIs is provided in Table 2 of this paper.

Earth System Science Data↗

USGS2021

Identifying dominant environmental predictors of freshwater wetland methane fluxes across diurnal to seasonal time scales

While wetlands are the largest natural source of methane (CH 4 ) to the atmosphere, they represent a large source of uncertainty in the global CH 4 budget due to the complex biogeochemical controls on CH 4 dynamics. Here we present, to our knowledge, the first multi-site synthesis of how predictors of CH 4 fluxes (FCH4) in freshwater wetlands vary across wetland types at diel, multiday (synoptic), and seasonal time scales. We used several statistical approaches (correlation analysis, generalized additive modeling, mutual information, and random forests) in a wavelet-based multi-resolution framework to assess the importance of environmental predictors, nonlinearities and lags on FCH4 across 23 eddy covariance sites. Seasonally, soil and air temperature were dominant predictors of FCH4 at sites with smaller seasonal variation in water table depth (WTD). In contrast, WTD was the dominant predictor for wetlands with smaller variations in temperature (e.g., seasonal tropical/subtropical wetlands). Changes in seasonal FCH4 lagged fluctuations in WTD by ~17 ± 11 days, and lagged air and soil temperature by median values of 8 ± 16 and 5 ± 15 days, respectively. Temperature and WTD were also dominant predictors at the multiday scale. Atmospheric pressure (PA) was another important multiday scale predictor for peat-dominated sites, with drops in PA coinciding with synchronous releases of CH 4 . At the diel scale, synchronous relationships with latent heat flux and vapor pressure deficit suggest that physical processes controlling evaporation and boundary layer mixing exert similar controls on CH 4 volatilization, and suggest the influence of pressurized ventilation in aerenchymatous vegetation. In addition, 1- to 4-h lagged relationships with ecosystem photosynthesis indicate recent carbon substrates, such as root exudates, may also control FCH4. By addressing issues of scale, asynchrony, and nonlinearity, this work improves understanding of the predictors and timing of wetland FCH4 that can inform future studies and models, and help constrain wetland CH 4 emissions.

Global Change Biology↗

USGS2021

Gap-filling eddy covariance methane fluxes: Comparison of machine learning model predictions and uncertainties at FLUXNET-CH4 wetlands

Time series of wetland methane fluxes measured by eddy covariance require gap-filling to estimate daily, seasonal, and annual emissions. Gap-filling methane fluxes is challenging because of high variability and complex responses to multiple drivers. To date, there is no widely established gap-filling standard for wetland methane fluxes, with regards both to the best model algorithms and predictors. This study synthesizes results of different gap-filling methods systematically applied at 17 wetland sites spanning boreal to tropical regions and including all major wetland classes and two rice paddies. Procedures are proposed for: 1) creating realistic artificial gap scenarios, 2) training and evaluating gap-filling models without overstating performance, and 3) predicting half-hourly methane fluxes and annual emissions with realistic uncertainty estimates. Performance is compared between a conventional method (marginal distribution sampling) and four machine learning algorithms. The conventional method achieved similar median performance as the machine learning models but was worse than the best machine learning models and relatively insensitive to predictor choices. Of the machine learning models, decision tree algorithms performed the best in cross-validation experiments, even with a baseline predictor set, and artificial neural networks showed comparable performance when using all predictors. Soil temperature was frequently the most important predictor whilst water table depth was important at sites with substantial water table fluctuations, highlighting the value of data on wetland soil conditions. Raw gap-filling uncertainties from the machine learning models were underestimated and we propose a method to calibrate uncertainties to observations. The python code for model development, evaluation, and uncertainty estimation is publicly available. This study outlines a modular and robust machine learning workflow and makes recommendations for, and evaluates an improved baseline of, methane gap-filling models that can be implemented in multi-site syntheses or standardized products from regional and global flux networks (e.g., FLUXNET).

Agricultural and Forest Meteorology↗

USGS2019

FLUXNET-CH4 synthesis activity: Objectives, observations, and future directions

This paper describes the formation of, and initial results for, a new FLUXNET coordination network for ecosystem-scale methane (CH 4 ) measurements at 60 sites globally, organized by the Global Carbon Project in partnership with other initiatives and regional flux tower networks. The objectives of the effort are presented along with an overview of the coverage of eddy covariance (EC) CH 4 flux measurements globally, initial results comparing CH 4 fluxes across the sites, and future research directions and needs. Annual estimates of net CH 4 fluxes across sites ranged from −0.2 ± 0.02 g C m –2 yr –1 for an upland forest site to 114.9 ± 13.4 g C m –2 yr –1 for an estuarine freshwater marsh, with fluxes exceeding 40 g C m –2 yr –1 at multiple sites. Average annual soil and air temperatures were found to be the strongest predictor of annual CH 4 flux across wetland sites globally. Water table position was positively correlated with annual CH 4 emissions, although only for wetland sites that were not consistently inundated throughout the year. The ratio of annual CH 4 fluxes to ecosystem respiration increased significantly with mean site temperature. Uncertainties in annual CH 4 estimates due to gap-filling and random errors were on average ±1.6 g C m –2 yr –1 at 95% confidence, with the relative error decreasing exponentially with increasing flux magnitude across sites. Through the analysis and synthesis of a growing EC CH 4 flux database, the controls on ecosystem CH 4 fluxes can be better understood, used to inform and validate Earth system models, and reconcile differences between land surface model- and atmospheric-based estimates of CH 4 emissions.

Bulletin of the American Meteorological Society↗

USGS2014

Productivity and carbon dioxide exchange of leguminous crops: estimates from flux tower measurements

Net CO 2 exchange data of legume crops at 17 flux tower sites in North America and three sites in Europe representing 29 site-years of measurements were partitioned into gross photosynthesis and ecosystem respiration by using the nonrectangular hyperbolic light-response function method. The analyses produced net CO 2 exchange data and new ecosystem-scale ecophysiological parameter estimates for legume crops determined at diurnal and weekly time steps. Dynamics and annual totals of gross photosynthesis, ecosystem respiration, and net ecosystem production were calculated by gap filling with multivariate nonlinear regression. Comparison with the data from grain crops obtained with the same method demonstrated that CO 2 exchange rates and ecophysiological parameters of legumes were lower than those of maize ( Zea mays L.) but higher than for wheat ( Triticum aestivum L.) crops. Year-round annual legume crops demonstrated a broad range of net ecosystem production, from sinks of 760 g CO 2 m –2 yr –1 to sources of –2100 g CO 2 m –2 yr –1 , with an average of –330 g CO 2 m –2 yr –1 , indicating overall moderate CO 2 –source activity related to a shorter period of photosynthetic uptake and metabolic costs of N 2 fixation. Perennial legumes (alfalfa, Medicago sativa L.) were strong sinks for atmospheric CO 2 , with an average net ecosystem production of 980 (range 550–1200) g CO 2 m –2 yr –1 .

Agronomy Journal↗