Geology Reports⌕ Search

Geology topics

Jason T. May

Publications and source records attributed to Jason T. May.

At least 37 records · Page 2Linked to original sources
USGS2011

Review of samples of water, sediment, tailings, and biota at the Little Bonanza mercury mine, San Luis Obispo County, California

Background and Objectives The Little Bonanza mercury (Hg) mine, located in San Luis Obispo County, California, is a relatively small mine with, a historical total Hg production of about 1,000 flasks. The mine workings and tailings are located in the headwaters of the previously unnamed west fork of Las Tablas Creek (WF Las Tablas Creek), which flows into the Nacimiento Reservoir. Wasterock and tailings eroded from the Little Bonanza Hg Mine have contributed Hg-enriched mine wastes to the headwaters of WF Las Tablas Creek. The mine is located on Federal land managed by the U.S. Bureau of Land Management (BLM), which requested that the U.S. Geological Survey (USGS) measure and characterize Hg and other geochemical constituents in tailings, sediment, water, and biota at and downstream from the minesite. This report is in response that request, from the lead agency which is mandated to conduct a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) - Removal Site Investigation (RSI). The RSI applies to removal of Hg-contaminated mine waste from the Little Bonanza minesite as a means of reducing Hg transport to WF Las Tablas Creek. This report summarizes data obtained from field sampling of mine tailings, wasterock, sediment, water, and biota at the Little Bonanza Mine that was completed on April 6, 2010. Conditions during sampling were dry and no rain had occurred in the watershed for several weeks. Our results permit a preliminary assessment of the mining sources of Hg and associated chemical constituents that could produce elevated levels of monomethyl mercury (MMeHg) in WF Las Tablas Creek and in biota. History and Geology The history of the Little Bonanza Hg mine is summarized here from Yates (1943) and other references as cited. The Little Bonanza Mine, located 20 mi west of Paso Robles, was discovered in 1862. Although production was minor until 1900, from 1900 to 1906, the mine produced about 1,000 flasks of Hg. Intermittent production continued into the 1940s but was relatively limited. Underground workings, now caved and inaccessible, include about 3,000 ft of drifts, crosscuts, and raises on three levels extending 260 ft downward. The workings at the Little Bonanza Mine explore a zone of fault breccia, which trends northwest. The breccia is composed of fragments of sandstone, greenstone, serpentine, and chert in a shale matrix. The serpentine has been hydrothermally altered to silica-carbonate rock, and the Hg deposit is hosted within the zone of alteration. The veins are discontinuous and irregular, but form a steplike pattern along the fault zone. The principal mineralization occurring in the veins is irregular, consisting of disseminated zones of cinnabar. Most of the veins in the mine area contain cinnabar. Sample Sites and Methods Samples were collected to assess the concentrations of Hg and biogeochemically relevant constituents in tailings and wasterock piles at the Little Bonanza Hg mine. Tailings are present adjacent to a three-pipe retort used to process the Hg ore. The tailings occur in the upper 15 cm of the soil adjacent to the retort and slag from the retort is present on the surface. An area of disturbed soil and rock uphill from the retort was likely formed during construction of a dam that provided water for mining activities. Wasterock in these piles was sampled. The largest amount of tailings is exposed to the west of the retort in the bank of WF Las Tablas Creek. Water, sediment, and biota were sampled from WF Las Tablas Creek, which flows through the mine area. Sample-site locations are shown in figures 10 and 11 and listed in table 1. Samples were collected when streamflow was low and no precipitation had occurred.

California↗
USGS2010

Responses of benthic macroinvertebrates to environmental changes associated with urbanization in nine metropolitan areas

Responses of benthic macroinvertebrates along gradients of urban intensity were investigated in nine metropolitan areas across the United States. Invertebrate assemblages in metropolitan areas where forests or shrublands were being converted to urban land were strongly related to urban intensity. In metropolitan areas where agriculture and grazing lands were being converted to urban land, invertebrate assemblages showed much weaker or nonsignificant relations with urban intensity because sites with low urban intensity were already degraded by agriculture. Ordination scores, the number of EPT taxa, and the mean pollution‐tolerance value of organisms at a site were the best indicators of changes in assemblage condition. Diversity indices, functional groups, behavior, and dominance metrics were not good indicators of urbanization. Richness metrics were better indicators of urban effects than were abundance metrics, and qualitative samples collected from multiple habitats gave similar results to those of single habitat quantitative samples (riffles or woody snags) in all metropolitan areas. Changes in urban intensity were strongly correlated with a set of landscape variables that was consistent across all metropolitan areas. In contrast, the instream environmental variables that were strongly correlated with urbanization and invertebrate responses varied among metropolitan areas. The natural environmental setting determined the biological, chemical, and physical instream conditions upon which urbanization acts and dictated the differences in responses to urbanization among metropolitan areas. Threshold analysis showed little evidence for an initial period of resistance to urbanization. Instead, assemblages were degraded at very low levels of urbanization, and response rates were either similar across the gradient or higher at low levels of urbanization. Levels of impervious cover that have been suggested as protective of streams (5–10%) were associated with significant assemblage degradation and were not protective.

Alabama, Colorado, Georgia, Massachusetts, North C↗
USGS2010

Streamflow characteristics and benthic invertebrate assemblages in streams across the western United States

Hydrographic characteristics of streamflow, such as high-flow pulses, base flow (background discharge between floods), extreme low flows, and floods, significantly influence aquatic organisms. Streamflow can be described in terms of magnitude, timing, duration, frequency, and variation (hydrologic regime). These characteristics have broad effects on ecosystem productivity, habitat structure, and ultimately on resident fish, invertebrate, and algae communities. Increasing human use of limited water resources has modified hydrologic regimes worldwide. Identifying the most ecologically significant hydrographic characteristics would facilitate the development of water-management strategies. Benthic invertebrates include insects, mollusks (snails and clams), worms, and crustaceans (shrimp) that live on the streambed. Invertebrates play an important role in the food web, consuming other invertebrates and algae and being consumed by fish and birds. Hydrologic alteration associated with land and water use can change the natural hydrologic regime and may affect benthic invertebrate assemblage composition and structure through changes in density of invertebrates or taxa richness (number of different species). This study examined associations between the hydrologic regime and characteristics of benthic invertebrate assemblages across the western United States and developed tools to identify streamflow characteristics that are likely to affect benthic invertebrate assemblages.

Fact Sheet↗
USGS2009

Relation of urbanization to stream fish assemblages and species traits in nine metropolitan areas of the United States

We examined associations of fish assemblages and fish traits with urbanization and selected environmental variables in nine major United States metropolitan areas. The strongest relations between fishes and urbanization occurred in the metropolitan areas of Atlanta, Georgia; Birmingham, Alabama; Boston, Massachusetts; and Portland, Oregon. In these areas, environmental variables with strong associations (rs ≥ 0.70) with fish assemblages and fish traits tended to have strong associations with urbanization. Relations of urbanization with fish assemblages and fish traits were weaker in Denver, Colorado; Dallas-Fort Worth, Texas; Milwaukee-Green Bay, Wisconsin; and Raleigh, North Carolina. Environmental variables associated with fishes varied among the metropolitan areas. The metropolitan areas with poor relations may have had a limited range of possible response because of previous landscape disturbances. Given the complexities of urban landscapes in different metropolitan areas, our results indicate that caution is warranted when generalizing about biological responses to urbanization.

Urban Ecosystems↗
USGS2009

Urban streams across the USA: Lessons learned from studies in 9 metropolitan areas

Studies of the effects of urbanization on stream ecosystems have usually focused on single metropolitan areas. Synthesis of the results of such studies have been useful in developing general conceptual models of the effects of urbanization, but the strength of such generalizations is enhanced by applying consistent study designs and methods to multiple metropolitan areas across large geographic scales. We summarized the results from studies of the effects of urbanization on stream ecosystems in 9 metropolitan areas across the US (Boston, Massachusetts; Raleigh, North Carolina; Atlanta, Georgia; Birmingham, Alabama; Milwaukee-Green Bay, Wisconsin; Denver, Colorado; Dallas-Fort Worth, Texas; Salt Lake City, Utah; and Portland, Oregon). These studies were conducted as part of the US Geological Survey’s National Water-Quality Assessment Program and were based on a common study design and used standard sample-collection and processing methods to facilitate comparisons among study areas. All studies included evaluations of hydrology, physical habitat, water quality, and biota (algae, macroinvertebrates, fish). Four major conclusions emerged from the studies. First, responses of hydrologic, physical-habitat, water-quality, and biotic variables to urbanization varied among metropolitan areas, except that insecticide inputs consistently increased with urbanization. Second, prior land use, primarily forest and agriculture, appeared to be the most important determinant of the response of biota to urbanization in the areas we studied. Third, little evidence was found for resistance to the effects of urbanization by macroinvertebrate assemblages, even at low levels of urbanization. Fourth, benthic macroinvertebrates have important advantages for assessing the effects of urbanization on stream ecosystems relative to algae and fishes. Overall, our results demonstrate regional differences in the effects of urbanization on stream biota and suggest additional studies to elucidate the causes of these underlying differences.

Alabama, Colorado, Georgia, Massachusetts, North C↗
USGS2009

Environmental Impact of the Contact and Sonoma Mercury Mines on Water, Sediment, and Biota in Anna Belcher and Little Sulphur Creek Watersheds, Sonoma County, California

The Contact and Sonoma mercury (Hg) deposits are among the youngest Hg deposits in the Coast Range Hg mineral belt and are located in the western part of the Clear Lake volcanic field in Sonoma County, California. The mine workings and tailings are located in the headwaters of Anna Belcher Creek, which is a tributary to Little Sulphur Creek. The Contact Hg mine produced about 1,000 flasks of Hg, and the Sonoma mine produced considerably less. Waste rock and tailings eroded from the Contact and Sonoma mines have contributed Hg-enriched mine waste material to the headwaters of Anna Belcher Creek. The mines are located on federal land managed by the U.S. Bureau of Land Management (USBLM). The USBLM requested that the U.S. Geological Survey (USGS) measure and characterize Hg and other geochemical constituents in tailings, sediment, water, and biota at the Contact and Sonoma mines and in Anna Belcher and Little Sulphur Creeks. This report is made in response to the USBLM request, the lead agency mandated to conduct a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) - Removal Site Investigation (RSI). The RSI applies to removal of Hg-contaminated mine waste from the Contact and Sonoma mines as a means of reducing Hg transport to Anna Belcher and Little Sulphur Creeks. This report summarizes data obtained from field sampling of mine tailings, waste rock, sediment, and water at the Contact and Sonoma mines that was initiated on April 20 during a storm event, and on June 19, 2001. Further sampling of water, sediment, and biota in a pond and tributaries that drain from the mine area was completed on April 1, 2003. Our results permit a preliminary assessment of the mining sources of Hg and associated chemical constituents that could elevate levels of monomethyl Hg (MMeHg) in tributaries and biota that are impacted by historic mining.

Open-File Report↗
USGS2009

Environmental Impact of the Helen, Research, and Chicago Mercury Mines on Water, Sediment, and Biota in the Upper Dry Creek Watershed, Lake County, California

The Helen, Research, and Chicago mercury (Hg) deposits are among the youngest Hg deposits in the Coast Range Hg mineral belt and are located in the southwestern part of the Clear Lake volcanic field in Lake County, California. The mine workings and tailings are located in the headwaters of Dry Creek. The Helen Hg mine is the largest mine in the watershed having produced about 7,600 flasks of Hg. The Chicago and Research Hg mines produced only a small amount of Hg, less than 30 flasks. Waste rock and tailings have eroded from the mines, and mine drainage from the Helen and Research mines contributes Hg-enriched mine wastes to the headwaters of Dry Creek and contaminate the creek further downstream. The mines are located on federal land managed by the U.S. Bureau of Land Management (USBLM). The USBLM requested that the U.S. Geological Survey (USGS) measure and characterize Hg and geochemical constituents in tailings, sediment, water, and biota at the Helen, Research, and Chicago mines and in Dry Creek. This report is made in response to the USBLM request to conduct a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA - Removal Site Investigation (RSI). The RSI applies to removal of Hg-contaminated mine waste from the Helen, Research, and Chicago mines as a means of reducing Hg transport to Dry Creek. This report summarizes data obtained from field sampling of mine tailings, waste rock, sediment, and water at the Helen, Research, and Chicago mines on April 19, 2001, during a storm event. Further sampling of water, sediment, and biota at the Helen mine area and the upper part of Dry Creek was completed on July 15, 2003, during low-flow conditions. Our results permit a preliminary assessment of the mining sources of Hg and associated chemical constituents that could elevate levels of monomethyl Hg (MMeHg) in the water, sediment, and biota that are impacted by historic mining.

Open-File Report↗
USGS2007

Mercury at the Oat Hill Extension Mine and James Creek, Napa County, California: Tailings, sediment, water, and biota, 2003-2004

The Oat Hill Extension (OHE) Mine is one of several mercury mines located in the James Creek/Pope Creek watershed that produced mercury from the 1870's until 1944 (U.S. Bureau of Mines, 1965). The OHE Mine developed veins and mineralized fault zones hosted in sandstone that extended eastward from the Oat Hill Mine. Waste material from the Oat Hill Mine was reprocessed at the OHE Mine using gravity separation methods to obtain cinnabar concentrates that were processed in a retort. The U.S. Bureau of Land Management requested that the U.S. Geological Survey measure and characterize mercury and other chemical constituents that are potentially relevant to ecological impairment of biota in tailings, sediment, and water at the OHE Mine and in the tributaries of James Creek that drain the mine area (termed Drainage A and B ) (Figs. 1 and 2). This report summarizes such data obtained from sampling of tailings and sediments at the OHE on October 17, 2003; water, sediment, and biota from James Creek on May 20, 2004; and biota on October 29, 2004. These data are interpreted to provide a preliminary assessment of the potential ecological impact of the mine on the James Creek watershed. The mine tailings are unusual in that they have not been roasted and contain relatively high concentrations of mercury (400 to 1200 ppm) compared to unroasted waste rock at other mines. These tailings have contaminated a tributary to James Creek with mercury primarily by erosion, on the basis of higher concentration of mercury (780 ng/L) measured in unfiltered (total mercury, Hg T ) spring water flowing from the OHE to James Creek compared to 5 to 14 ng/L Hg T measured in James Creek itself. Tailing piles (presumably from past Oat Hill mine dumping) near the USBLM property boundary and upstream of the main OHE mine drainage channel ( Drainage A ; Fig. 2) also likely emit mercury, on the basis of their mercury composition (930 to 1200 ppm). The OHE spring water is likely an appreciable source of sulfate and carbonate to James Creek, because the spring water was enriched in sulfate (130 mg/L) and carbonate (430 mg/L as CaCO 3 ) compared to James Creek water (70 to 100 mg/L SO 4 2- and 110 to 170 mg/L as CaCO 3 ) at the time of sampling. Concentrations of mercury in active channel sediment from James Creek are variable and potentially high, on the basis of chemical analysis (2.5 to 17 _g/g-wet sediment) and easily visible cinnabar grains in panned concentrates. Average (geometric mean) organic mercury (presumably monomethyl mercury (MMHg); §2.3.3) concentrations in several invertebrate taxa collected from the James Creek watershed locations were higher than invertebrates taken from a Northern California location lacking a known point source of mercury. The mean proportion of MMHg to total mercury in James Creek predatory insect samples was 40 percent (1 standard deviation = 30 percent); only 40 percent of all insect samples had a MMHg/Hg T proportion greater than 0.5. The low proportions of MMHg measured in invertebrates in James Creek and the presence of cinnabar in the creek suggest that some invertebrates may have anomolously high Hg concentrations as a result of the injestion or adhesion of extremely fine-grained cinnabar particles. Interpretation of Hg T in frogs and fish as an indicator of mercury reactivity, biouptake, or trophic transfer is limited, pending MMHg measuremens, by the possibility of these whole-body samples having contained cinnabar particles at the time of analysis. To minimize this limitation, the gastrointestinal tracts and external surfaces of all amphibians, where cinnabar most likely resides, were carefully flushed to remove any visible particles. However, extremely fine-grained, invisible, adhesive cinnabar particles likely exist in the amphibians' habitats. Hg T in foothill yellow-legged frogs collected from the James Creek study area, ranging from 0.1 to 0.6 μg/g Hg, was on average twice that of an extensive database compiled from Hg T in frogs studied throughout Northern California. Average concentrations of Hg T in frogs from James Creek were similar upstream (0.18 μg/g) and downstream (0.15 μg/g) of the confluence with Tributary 1 and at the lower Corona Mine adit drainage (0.14 μg/g). Frogs may be susceptible to trophic transfer of MMHg from invertebrates, but further study is required to rule out cinnabar ‘contamination.’ Hg T concentrations in rainbow trout collected from James Creek upstream and downstream of Tributary 1 averaged 0.10 μg/g and 0.13 μg/g, respectively. Compared to invertebrates, trout Hg T was less variable, suggesting that trout were less contaminated with cinnabar. California roach had significantly higher Hg T on average than trout (0.16 vs. 0.12 μg/g), and can be considered moderately contaminated compared to the same species from other sites in Northern California, which average 0.12 μg/g Hg. While limited measurements of mercury in water, sediment, and fish exceed, in some samples, predefined ecologically protective criteria for mine-impacted California systems, they do not clearly demonstrate that the biota residing in James Creek in the vicinity of the OHE are ecologically impaired. The potential for ecological impairment is clearly evident from invertebrate methyl mercury results and may manifest in other biological ecosystem residents that have yet to be studied (e.g., piscivorous birds). Methyl mercury concentrations in flowing water and sediment from James Creek and the tributary that drains the OHE are relatively low, ranging from 0.04 to 0.08 ng/L, although these data should be cautiously interpreted (see §3.2). While the results of this investigation suggest that the OHE contributes inorganic mercury to James Creek, they do not indicate the extent to which the OHE site is ecologically impairing biota relative to other sources of mercury. Improved sampling and analytical methods are recommended for future study.

California↗
USGS2006

Variation in spring nearshore resident fish species composition and life histories in the lower San Joaquin watershed and delta

Providing freshwater to human populations while protecting or rehabilitating ecosystem health is a significant challenge to water resource managers and requires accurate knowledge of aquatic resources. Previous studies of fish assemblages in the San Francisco Estuary and watershed have focused on specific habitat types, water bodies, or geographic subregions. In this study, we use seining data from two monitoring programs to provide an integrated view of spring nearshore resident fish species composition and life history characteristics in five regions: the San Joaquin River, the upper Sacramento River, the lower Sacramento River, the northern Sacramento-San Joaquin Delta (North Delta), and the Interior Delta. Data for the period March-May from 1994 to 2002, showed that spring species composition of the San Joaquin River was very different from the other four regions. Total catch in the San Joaquin River was dominated by small, short-lived batch spawning alien species (93%), particularly red shiner Cyprinella lutrensis (>75% of total catch). The upper and lower Sacramento River were very similar in species composition and life history characteristics and less dominated by alien fish (<45% of total catch). Ordination of species percentage abundances by non–metric multidimensional scaling confirmed that the major gradient was from assemblages dominated by native species to assemblages dominated by alien species. Two-way analysis of variance of ordination scores indicated that spatial variability was more important than annual variability in explaining patterns in species composition. The potential benefits of San Joaquin River native fish restoration appear high because there is so much potential for improvement; however, it is unclear how to best manipulate the system to achieve such restoration. Addressing such uncertainties is necessary if society desires the reservation and restoration of native biodiversity as human demands on water resources increase.

California↗
USGS2005

Mercury contamination from historical gold mining in California

Mercury contamination from historical gold mines represents a potential risk to human health and the environment. This fact sheet provides background information on the use of mercury in historical gold mining and processing operations in California, with emphasis on historical hydraulic mining areas. It also describes results of recent USGS projects that address the potential risks associated with mercury contamination. Miners used mercury (quicksilver) to recover gold throughout the western United States. Gold deposits were either hardrock (lode, gold-quartz veins) or placer (alluvial, unconsolidated gravels). Underground methods (adits and shafts) were used to mine hardrock gold deposits. Hydraulic, drift, or dredging methods were used to mine the placer gold deposits. Mercury was used to enhance gold recovery in all the various types of mining operations; historical records indicate that more mercury was used and lost at hydraulic mines than at other types of mines. On the basis of USGS studies and other recent work, a better understanding is emerging of mercury distribution, ongoing transport, transformation processes, and the extent of biological uptake in areas affected by historical gold mining. This information has been used extensively by federal, state, and local agencies responsible for resource management and public health in California.

Fact Sheet↗
USGS2005

Geochemical characterization of water, sediment, and biota affected by mercury contamination and acidic drainage from historical gold mining, Greenhorn Creek, Nevada County, California, 1999-2001

In 1999, the U.S. Geological Survey (USGS) initiated studies of mercury and methylmercury occurrence, transformation, and transport in the Bear River and Yuba River watersheds of the northwestern Sierra Nevada. Because these watersheds were affected by large-scale, historical gold extraction using mercury amalgamation beginning in the 1850s, they were selected for a pilot study of mercury transport by the USGS and other cooperating agencies. This report presents data on methylmercury (MeHg) and total mercury (THg) concentrations in water, bed sediment, invertebrates, and frogs collected at 40 stations during 1999-2001 in the Greenhorn Creek drainage, a major tributary to Bear River. Results document several mercury contamination “hot spots” that represent potential targets for ongoing and future remediation efforts at abandoned mine sites in the study area. Water-quality samples were collected one or more times at each of 29 stations. The concentrations of total mercury in 45 unfiltered water samples ranged from 0.80 to 153,000 nanograms per liter (ng/L); the median was 9.6 ng/L. Total mercury concentrations in filtered water (41 samples) ranged from less than 0.3 to 8,000 ng/L; the median was 2.7 ng/L. Concentrations of methylmercury in the unfiltered water (40 samples) ranged from less than 0.04 to 9.1 ng/L; the median was 0.07 ng/L. Methylmercury in filtered water (13 samples) ranged from less than 0.04 to 0.27 ng/L; the median was 0.04 ng/L. Acidic drainage with pH values as low as 3.4 was encountered in some of the mined areas. Elevated concentrations of aluminum, cadmium, copper, iron, manganese, nickel, and zinc were found at several stations, especially in the more acidic water samples. Total mercury concentrations in sediment were determined by laboratory and field methods. Total mercury concentrations (determined by laboratory methods) in ten samples from eight stations ranged from about 0.0044 to 12 µg/g (microgram per gram, equivalent to parts per million). Methylmercury concentrations in these samples ranged from less than 0.00011 to 0.0095 µg/g. A field panning method was used to determine the concentration of liquid elemental mercury in 22 samples from 14 stations. Measured quantities of elemental mercury recovered by panning ranged from a trace amount estimated at 100 milligrams per kilogram (equivalent to parts per million) to 45,000 milligrams per kilogram (equivalent to 4.5 per cent, by weight). In total, 194 invertebrate samples were collected at 31 stations; 78 of the samples were analyzed for concentrations of THg and MeHg and used to calculate MeHg to THg ratios. A total of 69 frog samples were collected at 19 stations, and all were analyzed only for THg. Ranges of MeHg concentrations (µg/g, wet weight) in invertebrate samples and number of samples (n) were 0.0012-0.048 for banana slugs (Arionidae, n = 27), 0.027-0.39 for dobsonflies (Corydalidae, n = 14), 0.029-0.50 for predaceous diving beetles (Dytiscidae, n = 31), 0.026-0.52 for predaceous stoneflies (Perlidae, n = 18), 0.011-1.6 for dragonflies (Odonata, n = 46), and 0.061-0.55 for water striders (Gerridae, n = 56). The ratio of MeHg to THg in invertebrates was greater than 50 percent for 74 of 78 samples. The data from this reconnaissance sampling effort have been used by land-management agencies in selecting abandoned mine sites for remediation. The Forest Service has remediated the Sailor Flat site, and the Bureau of Land Management has initiated plans to remediate the Boston Mine drainage tunnel.

California↗
USGS2004

Periphyton and Macroinvertebrate Communities at Five Sites in the San Joaquin River Basin, California, during June and September, 2001

The effects of agriculture, particularly from the use of pesticides, on aquatic ecosystems in the San Joaquin River Basin concern many aquatic resource managers, water quality managers, and water users. A total of five sites were sampled once in June 2001 and once in September 2001 to document the periphyton (attached algae) community, the benthic macroinvertebrate (insects and non-insects) community, and stream habitat conditions. The purposes of the study were to document existing conditions and, to the extent possible, relate the periphyton and macroinvertebrate community condition to environmental conditions. A total of 161 taxa of algae were collected during the study. Samples from the richest targeted habitat, woody debris, included 109 taxa. In both the June and September samples, greater than 95 percent of the taxa collected were diatoms. Cluster analysis and detrended correspondence analysis of sample data showed that Orestimba Creek had a very different periphyton community than the Merced and Tuolumne Rivers. Salt Slough and the San Joaquin River had community compositions that were intermediate between the two extremes. A total of 126 taxa of macroinvertebrates were collected during the study. Samples from woody debris included 59 taxa. The samples included a variety of both insect and non-insect taxa. Cluster analysis and detrended correspondence analysis of sample data showed that Orestimba Creek was very different from the Merced River and Tuolumne River, similar to the results for periphyton. Orestimba Creek was dominated by non-insects, while the Merced and Tuolumne Rivers were dominated by insects. Salt Slough was more similar to Orestimba Creek because of the abundance of non-insects. The San Joaquin River was more similar to the Merced and Tuolumne Rivers. There was no evidence of major differences between June and September samples for either the periphyton or macroinvertebrate communities. Specific conductance (a surrogate for salinity) and several habitat measures were associated with differences in the periphyton and macroinvertebrate communities at the five sites. Additional sampling at more sites over a longer period of time will likely be necessary before the effects of water quality and habitat conditions on aquatic communities are fully understood in the San Joaquin River Basin.

Scientific Investigations Report↗
USGS2001

Chinese mitten crab surveys of San Joaquin River basin and Suisun Marsh, California, 2000

Juvenile Chinese mitten crabs (Eriocheir sinensis) are known to use both brackish and freshwater habitats as rearing areas. The objectives of this study were to examine the habitat use and potential effects of mitten crabs in the freshwater habitats of the San Joaquin River drainage up-stream of the Sacramento-San Joaquin Delta. After several unsuccessful attempts to catch or observe mitten crabs by trapping, electrofishing, and visual observations, the study was redirected to determine the presence of crabs in the San Joaquin River (in the vicinity of Mossdale) and Suisun Marsh. Monthly surveys using baited traps in the San Joaquin River were done from June through November 2000 and in the Suisun Marsh from August through October 2000. No mitten crabs were caught in the San Joaquin River Basin and only one mitten crab was caught in Suisun Marsh. Surveys were conducted at 92 locations in the San Joaquin River Basin by deploying 352 traps for 10,752 hours of trapping effort; in Suisun Marsh, 34 locations were investigated by deploying 150 traps for 3,600 hours of trapping effort. The baited traps captured a variety of organisms, including catfishes (Ictularidae), yellowfin gobies (Acantho-gobius flavimanus), and crayfish (Decapoda). It is unclear whether the failure to capture mitten crabs in the San Joaquin River Basin and Suisun Marsh was due to ineffective trapping methods, or repre-sents a general downward trend in populations of juvenile mitten crabs in these potential rearing areas or a temporary decline related to year-class strength. Available data (since 1998) on the number of mitten crabs entrained at federal and state fish salvage facilities indicate a downward trend in the number of crabs, which may indicate a declining trend in use of the San Joaquin River Basin by juvenile mitten crabs. Continued monitoring for juvenile Chinese mitten crabs in brackish and freshwater portions of the Sacramento-San Joaquin River Basins is needed to better assess the potential population variability of this relatively new invasive species and the possible management strategies.

Open-File Report↗
USGS2000

Water quality in the Sacramento River basin, California, 1994-98

This report summarizes major findings about water quality in the Sacramento River basin that emerged from an assessment conducted between 1994 and 1998 by the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program. Water quality is discussed in terms of local and regional issues and compared to conditions found in all 36 NAWQA study areas assessed to date. Findings are also explained in the context of selected national benchmarks, such as those for drinking-water quality and the protection of aquatic organisms.

Circular↗
USGS2000

Mercury bioaccumulation in fish in a region affected by historic gold mining: The South Yuba River, Deer Creek, and Bear River watersheds, California, 1999

Mercury that was used historically for gold recovery in mining areas of the Sierra Nevada continues to enter local and downstream water bodies, including the Sacramento Delta and the San Francisco Bay of northern California. Methylmercury is of particular concern because it is the most prevalent form of mercury in fish and is a potent neurotoxin that bioaccumulates at successive trophic levels within food webs. In April 1999, the U.S. Geological Survey, in cooperation with several other agencies the Forest Service (U.S. Department of Agriculture), the Bureau of Land Management, the U.S. Environmental Protection Agency, the California State Water Resources Control Board, and the Nevada County Resource Conservation District began a pilot investigation to characterize the occurrence and distribution of mercury in water, sediment, and biota in the South Yuba River, Deer Creek, and Bear River watersheds of California. Biological samples consisted of semi-aquatic and aquatic insects, amphibians, bird eggs, and fish. Fish were collected from 5 reservoirs and 14 stream sites during August through October 1999 to assess the distribution of mercury in these watersheds. Fish that were collected from reservoirs included top trophic level predators (black basses, Micropterus spp.) intermediate trophic level predators [sunfish (blue gill, Lepomis macrochirus; green sunfish, Lepomis cyanellus; and black crappie, Poxomis nigromaculatus)] and benthic omnivores (channel catfish, Ictularus punctatus). At stream sites, the species collected were upper trophic level salmonids (brown trout, Salmo trutta) and upper-to-intermediate trophic level salmonids (rainbow trout, Oncorhynchus mykiss). Boneless and skinless fillet portions from 161 fish were analyzed for total mercury; 131 samples were individual fish, and the remaining 30 fish were combined into 10 composite samples of three fish each of the same species and size class. Mercury concentrations in samples of black basses (Micropterus spp.), including largemouth, smallmouth, and spotted bass, ranged from 0.20 to 1.5 parts per million (ppm), wet basis. Mercury concentrations in sunfish ranged from less than 0.10 to 0.41 ppm (wet). Channel catfish had mercury concentrations from 0.16 to 0.75 ppm (wet). The range of mercury concentrations observed in rainbow trout was from 0.06 to 0.38 ppm (wet), and in brown trout was from 0.02 to 0.43 ppm (wet). Mercury concentrations in trout were greater than 0.3 ppm in samples from three of 14 stream sites. Mercury at elevated concentrations may pose a health risk to piscivorous wildlife and to humans who eat fish on a regular basis. Data presented in this report may be useful to local, state, and federal agencies responsible for assessing the potential risks associated with elevated levels of mercury in fish in the South Yuba River, Deer Creek, and Bear River watersheds.

California↗