Geology topics

Jane S. Rogosch

Publications and source records attributed to Jane S. Rogosch.

14 recordsLinked to original sources

USGS2026

Comparative assessment of STIC sensors, streamflow and rain gauges for quantifying river connectivity in intermittent systems

In intermittent stream systems, including those occurring in Texas, USA, the severity of low-flow conditions, duration of seasonal disconnection, and frequency of no-flow events have been amplified by drought. Documentation of these no-flow events is necessary to evaluate ecosystem health. However, many intermittent reaches remain un-gauged given that perennial river sec-tions are often prioritized for gauge placement. Our objectives were to 1) document stream flow using Stream Temperature, Intermittency, and Conductivity (STIC) loggers to determine the frequency and duration of no-flow events in intermittent tributaries of the Colorado River, Texas and 2) compare logger data to publicly available data from streamflow discharge and precipitation gauge networks to understand differences among these data types for drying event characterization. We use these comparisons to summarize benefits and limitations of the application of in-stream data loggers. STIC loggers were deployed at 19 sites, one in each pool and riffle habitat of a stream reach. STIC loggers recorded a measurement of relative conductance every six hours from June 2022 to March 2024, which was used to determine the presence or absence of flow connectivity in a reach. No-flow duration among intermittent reaches varied between 37 and 270 days across tributaries during an ongoing drought in the study area. Overall, logger data was more precise than discharge data for characterizing no-flow events or precipitation data when documenting presence of water in the stream channel due to runoff. Lack of discharge gauges in intermittent tributaries left large sections of stream reaches undocumented and resulted in mischaracterization of flow patterns. Drought severity across the tributaries did not follow longitudinal patterns that would be expected by the climatic precipitation gradient of the study area. More research is needed to determine if factors such as population size affect severity. Likewise, precipitation data did not correlate well with logger water presence data, lacking consideration for groundwater recharge, soil hydrophobicity, and surface compaction. This study shows that to monitor no-flow events, detailed spatial datasets are necessary and that STIC loggers are useful tools that provide data to fill spatial information gaps and facilitate more accurate flow characterization and water presence data in intermittent systems.

Texas↗

USGS2025

Application of fin tissue for nonlethal stable isotope analysis of small-bodied fishes

Stable isotopes are commonly used to characterize food web structure and resource use by aquatic organisms. White muscle is generally preferred for stable isotope analysis of fishes. However, obtaining white muscle tissue typically requires lethal take or invasive sampling techniques, which are undesirable for small-bodied species or those of conservation concern. We assessed the use of fish fin as a nonlethal alternative to muscle tissue for stable isotope analysis of four small-bodied fishes native to the upper Red River drainage of Texas and Oklahoma, USA: plains minnow Hybognathus placitus , prairie chub Macrhybopsis australis , Red River shiner Alburnops bairdi , and Red River pupfish Cyprinodon rubrofluviatilis . Fin isotope values were strong predictors of both δ 15 N and δ 13 C muscle isotope values (ANCOVA: δ 15 N: F 1,451 = 5312.09, P < 0.001; δ 13 C: F 1,451 = 7864.39, P < 0.001), although isotopic composition varied among species for δ 13 C ( F 3,451 = 4.29, P < 0.01). Species-specific regression models indicated positive linear relationships between fin and muscle isotope values (δ 15 N: P < 0.001, R 2 ≥ 0.80; δ 13 C: P < 0.001, R 2 ≥ 0.83) that did not vary significantly with body size or age of individuals. We suggest minimum total length thresholds for least destructive fin clipping at 70 mm, 62 mm, and 48 mm for plains minnow, prairie chub, and Red River pupfish, respectively. Nonlethal fin clipping may not be viable for Red River shiner within the size range reported here as multiple fins were required for routine analysis. Overall, we conclude that fin tissue may be used for δ 15 N and δ 13 C assessments to mitigate lethal take of imperiled, small-bodied fishes.

Oklahoma, Texas↗

USGS2025

A flexible conservation and connectivity tool to inform stream conservation prioritization

Healthy stream networks rely on diverse fish assemblages and the mobility of fish between habitats to maintain ecosystem structure and function. Anthropogenic structures that impede fish movement (e.g., roads, dams) disrupt life cycles of migratory fishes and isolate fish populations making them more sensitive to environmental stressors. Growing interest in barrier removal is driven by the recognition that restoring fish passage improves ecosystem health and resilience at multiple trophic levels, but identifying which streams should be reconnected and which barriers to remove remains an unresolved issue. Using the state of Missouri (USA) stream network, we developed an interactive decision support tool designed to help natural resource managers identify a shortlist of stream reaches to prioritize for reconnection, barrier removal, and habitat restoration. Our aquatic connectivity decision support tool, which we call AquaConn, is aimed at managers seeking to improve connectivity within and between existing conservation areas, particularly in wadeable streams. AquaConn provides a flexible platform that allows managers to consider entire assemblages of fish or individual species across local or more regional spatial scales. While AquaConn ( https://bit.ly/4kQgXK8 ) was built for the state of Missouri, our approach and framework can be replicated in any geographical region that has adequate fish assemblage data.

Missouri↗

USGS2025

Long‐term regime shifts in xeric ecoregion freshwater fish assemblages due to Anthropogenic and climate stressors

Shifting climate regimes are projected to increase the area of xeric regions and result in more pronounced intermittency across river networks. Given these projected changes, we aim to understand the factors contributing to species persistence under increasing aridity. To investigate how changing flow regimes are related to changes in fish richness and assemblage composition, we compiled data from 1473 xeric stream sites in the United States and Australia. The temporal coverage of this dataset is more than 40 years, from 1980 to 2021. Our focus was on fishes occurring in xeric streams and included 191 species. We compiled climate, hydrologic, and fish species trait data to identify relationships between environmental drivers of species persistence and corresponding characteristics common to species in these systems and traits eliciting the strongest responses to environmental change. Our data show declines in overall precipitation in concert with increasing temperatures over the last several decades. Climatic shifts were accompanied by declines in discharge, increased zero-flow days, and longer durations of no-flow periods. In these same systems, an overall linear decline in fish species richness was observed, but it was not directly correlated with any hydrologic predictors. However, xeric species of conservation concern were small-bodied and occupied lower trophic levels than those not of concern. Listed species were primarily affected by multiple stressors, including habitat degradation and invasive species, compounded by a small geographic range. We thus propose a multiple stressors argument for the declines in xeric fish assemblages, something that may be exacerbated by climate alterations in the future. This work highlights a critical conservation need for xeric fishes and identifies taxa that are especially vulnerable to a combination of anthropogenic stressors and changing climates.

Ecology and Evolution↗

USGS2025

Vertebrates in trade that pose high invasion risk to the United States

The United States imports thousands of live vertebrate species annually as part of legal trade. Escapes and releases from captivity are major pathways of invasion, however, the risk posed by the thousands of imported vertebrate species has not been systematically assessed. We conducted a horizon scan that used a data-driven climate match to filter a list of nearly 15,000 taxa drawn from across the globe of imported fish, amphibians, reptiles, birds, and mammals for rapid assessment by taxonomic experts. Experts evaluated 840 species and identified 32 (22 reptiles and 10 fishes) as having the highest risk for establishment, spread, and negative impacts. Of those high-risk species, the majority have the capacity to disrupt ecosystem processes via their role as top predators or the unique ecological niches that they occupy, while several of the snake species pose a threat to human health. High-risk species were often scored with high confidence while in contrast, low scores were attributed to a combination of ecological redundancy, low propagule pressure, or low climate match while low confidence arose from a lack of information in the literature (i.e., data deficiency). Our study therefore highlights legally imported species likely to cause the greatest harm with the recognition that many other species could also become invasive in the United States. The ranked list of vertebrate threats can be used to prioritize watchlists and inform the development of targeted regulations for importation can be applied to regions to provide a rapid, preliminary screening for large pools of potential invaders.

Biological Conservation↗

USGS2024

Identifying lakes critical to the westward spread and establishment of zebra mussels

Damaging aquatic invasive species, such as the zebra mussel ( Dreissena polymorpha), pose an ongoing concern for potential introduction and establishment in the western United States. Our study applied habitat suitability indices and network analysis to identify lakes critical to the continued westward spread and establishment of zebra mussels from a key invasion front in Texas. We created multiple networks consisting of lake nodes and connecting roadway edges. Each network represented the potential connectivity of lakes for recreational users depending on the distance boaters were likely to travel. We evaluated three networks with different maximum edge lengths based on boater movement surveys: 363-km, 125-km, and 51-km. Via graph analysis, we identified lakes critical to mussel spread by acting as hubs, stepping stones, or cutpoints in each network. Water quality-based habitat suitability indices classified most lakes in the study area as moderate to high suitability. In all networks, hubs were concentrated in northeastern Texas. At the lowest maximum edge lengths, stepping stones were also concentrated in the northeast, but could be found in the western portions of the study area as maximum travel distance increased. No cutpoints were found in the 363-km maximum edge length network, indicating a highly connected network with the potential for further western spread facilitated by stepping stones in western Texas and New Mexico. Identifying critical lakes using network analysis and habitat suitability indices provides a predictive tool for resource managers to guide the allocation of limited time and resources for management actions.

New Mexico, Texas↗

USGS2024

Biogeochemical and community ecology responses to the wetting of non-perennial streams

Transitions between dry and wet hydrologic states are the defining characteristic of non-perennial rivers and streams, which constitute the majority of the global river network. Although past work has focused on stream drying characteristics, there has been less focus on how hydrology, ecology and biogeochemistry respond and interact during stream wetting. Wetting mechanisms are highly variable and can range from dramatic floods and debris flows to gradual saturation by upwelling groundwater. This variation in wetting affects ecological and biogeochemical functions, including nutrient processing, sediment transport and the assembly of biotic communities. Here we synthesize evidence describing the hydrological mechanisms underpinning different types of wetting regimes, the associated biogeochemical and organismal responses, and the potential scientific and management implications for downstream ecosystems. This combined multidisciplinary understanding of wetting dynamics in non-perennial streams will be key to predicting and managing for the effects of climate change on non-perennial ecosystems.

Nature Water↗

USGS2024

Refuge identification as a climate adaptation strategy to promote fish persistence during drought

Climate change is leading to global increases in extreme events, such as drought, that threaten the persistence of freshwater biodiversity. Identification and management of drought refuges, areas that promote resistance and resilience to drought, will be critical for preserving and recovering aquatic biodiversity in the face of climate change and increasing human water use. Although several reviews have addressed the effects of droughts and highlighted the role of refuges, a need remains on how to identify functional refuges that can be used in a drought management framework to support fish assemblages. We synthesize literature on drought refuges and propose a framework to identify and manage functional refuges that incorporate species physiological tolerances, behaviours and life-history strategies. Stream pools, perennial reaches and off-channel habitat were identified as important drought refuges for fish. The ability of refuges to improve species resistance and resilience to drought requires careful consideration of the biology of the target species and targeted management to promote persistence, quality and connectivity of refuges. Case studies illustrate that management of drought refuges can be challenging because of competing demands for water, incomplete knowledge of ecological requirements for target species and the increasing occurrence of multi-year droughts. Climate adaptation is increasingly important, and drought refuges can increase fish resistance and resilience to climate-related drought across the riverscape.

Fish and Fisheries↗

USGS2024

Balancing ecology and practicality to rank waterbodies for preventative invasive species management

‘Early detection and rapid response’ (EDRR) is the most successful framework for preventative invasive species management, but prioritizing localized EDRR actions with limited resources is challenging. An approach that ranks individual locations, such as waterbodies, for EDRR by combining an invasive species' establishment risk with the practicality of managing it could help set reasonable priorities. Here, we worked with regional practitioners in Arkansas, USA, and the broader Southeastern USA to co-produce a workflow for preventative aquatic invasive species management that (1) estimates establishment risk under current and future climates with a species distribution model, (2) scores waterbodies according to difficulty of eradicating an aquatic invasive species if it were introduced and (3) combines establishment risk and eradication difficulty scores to rank waterbodies according to preventative management priority. As our focal species, we used giant salvinia ( Salvinia molesta ), a floating aquatic fern ranked among the worst weeds in the world due to its negative socio-ecological impacts and difficulty to eradicate once established. Current establishment risk is low for much of our study area, but under future climate scenarios (RCP 8.5), areas with >60% giant salvinia establishment risk increased from 546 km 2 to 30,219 km 2 between 2023 and 2040 in Arkansas. We found giant salvinia establishment risk and eradication difficulty are independent of each other ( r = 0.28), and it follows that, alone, early detection tools such as species distribution models are insufficient for managers to prioritize sites for EDRR. Practical implication : We envision our approach fitting into a potential EDRR workflow that cascades from broad- to local-scale. To illustrate, (1) horizon scanning and/or climate matching generates lists of high-risk invasive species; (2) species lists are narrowed according to eradication feasibility scores; (3) for all remaining species, all waterbodies across a geography of interest receive prioritization rankings based on establishment risk and eradication difficulty scores. Given that climate change makes predicting invasive species' distributions a moving target, combining co-produced eradication difficulty scoring with species distribution modelling will balance rigour with practicality when prioritizing locations for EDRR.

Arkansas, Louisiana, Mississippi, Missouri, Oklaho↗

USGS2024

Evaluating effectiveness of restoration to address current stressors to riverine fish

River restoration programmes with the goal of conserving and rehabilitating inland fishes have a multi-decadal history, but evaluation and synthesis of past restoration actions have been limited by a lack of monitoring and reporting. Given that calls for both monitoring and systematic reviews of restoration have increased, we were interested in the influence that restoration has had on improving conditions for riverine fishes resulting from long-standing and increasingly prominent stressors. Our objectives were to (1) identify which stressors were targeted in river restoration efforts, (2) determine the proportion of published studies that articulate restoration goals and develop comparative monitoring designs for assessing the effects of restoration on fishes, and (3) conduct a meta-analysis to synthesise fish responses to restoration projects. We assessed restoration effectiveness for increasing fish density and richness from peer-reviewed papers published over the past decade using a global systematic review and meta-analysis. We found that restoration actions addressed major stressors primarily by improving in-stream habitat (37%), increasing in-stream longitudinal connectivity (26%) and increasing lateral floodplain connections (9%). Although 81% of studies had comparative monitoring designs (i.e., before/after and control/impact) and stated restoration goals, only 40% of those studies reported sufficient data to be included in the meta-analysis. Projects which increased in-stream connectivity had the largest positive effect size on fish density and richness compared to in-stream habitat improvements and increasing floodplain connections. Time since restoration and restoration size (i.e., geographical footprint) were not strong predictors of fish response effect sizes. Restoration effectiveness was highly variable among project types. Authors of studies included in the meta-analysis often identified spatial or temporal scale of monitoring, overriding catchment conditions, and recolonisation potential as sources of variability and effectiveness in restoration outcomes. Systematic reporting of these and other covariates may help guide processes in restoration evaluation and provide valuable research insights. Despite increased emphasis on monitoring, incomplete data reporting limited the number of studies that could be included for quantitative meta-analysis. Persistent emphasis on setting specific criteria (e.g., measurable outcomes of fish response) for restoration goals, project monitoring, data reporting, information sharing and collaborative projects is likely to continue to improve understanding of restoration effectiveness transferable to future endeavours. Our results can be used to support river restoration practitioners with evidence-based information to evaluate the cost–benefit ratio of competing restoration priorities, and inform restoration planning and implementation for riverine fish.

Freshwater Biology↗

USGS2023

A metasystem approach to designing environmental flows

Accelerating the design and implementation of environmental flows (e-flows) is essential to curb the rapid, ongoing loss of freshwater biodiversity and the benefits it provides to people. However, the effectiveness of e-flow programs may be limited by a singular focus on ensuring adequate flow conditions at local sites, which overlooks the role of other ecological processes. Recent advances in metasystem ecology have shown that biodiversity patterns and ecosystem functions across river networks result from the interplay of local (environmental filtering and biotic interactions) and regional (dispersal) ecological processes. No guidelines currently exist to account for these processes in designing e-flows. We address this gap by providing a step-by-step operational framework that outlines how e-flows can be designed to conserve or restore metasystem dynamics. Our recommendations are relevant to diverse regulatory contexts and can improve e-flow outcomes even in basins with limited in situ data.

BioScience↗

USGS2023

Toxic algae in inland waters of the conterminous United States—A review and synthesis

Cyanobacteria are the most common toxigenic algae in inland waters. Their toxins can affect the health of aquatic and terrestrial organisms, including humans. Other algal groups, such as haptophytes (e.g., Prymnesium parvum ) and euglenoids (e.g., Euglena sanguinea ), can also form harmful algal blooms (HABs) whose toxins cause injury to aquatic biota but currently have no known effects on human health. Prymnesium parvum , however, is responsible for some of the worst HAB-related ecological disasters recorded in inland waters. Here, we provide an overview of the primary toxigenic algae found in U.S. inland waters: cyanobacteria (planktonic forms), P. parvum , and E. sanguinea with the objective of describing their similarities and differences in the areas of HAB ecology, algal toxins, and the potential for future range expansion of HABs. A detailed account of bloom habitats and their known associations with land cover and use is provided from the perspective of water quality. This review revealed that salinity may have an influence on inland cyanobacterial blooms and cyanotoxins that had not been fully recognized previously.

Water↗

USGS2022

How shall we meet? Embracing the opportunities of virtual conferencing

The SARS-CoV-2 (COVID-19) pandemic triggered dramatic shifts in the way that ecologists teach, research, and interact (e.g., Cooke et al. 2021 ). As the world now adjusts to a “new normal” era, there is notable and open discussion about the merits or desire to return to practices used prior to the pandemic (e.g., Roulson 2021 ). A dominant aspect of these discussions is when and how researchers can return to the practice of large, centralized, in-person conferences that have been the primary mode of professional interaction for decades. While questions of safety are naturally paramount and will guide decision making for some time, there remains the broader question of whether and how to implement virtual and hybrid formats in the future. Discussions about the return to in-person meetings and expressed resentment about the use of virtual formats (Stevens and Murphy 2021 ) that we routinely see circulated by professional organizations and on social media assume that the latter is a lesser-quality version of the former. However, we put forward that these sentiments neglect the diversity of opinions among scientists and evidence of prevalent, positive attitudes about the use of virtual (and possibly, as yet undeveloped) modes of conferences. For example, 74% of more than 900 researchers surveyed by the journal Nature during the initial phase of the pandemic expressed a desire for virtual conferences to remain in practice even when travel restrictions were eased (Remmel 2021 ). Other surveys have shown that scientists are highly interested in alternative conference formats due to concerns about climate change (Nursey-Bray et al. 2019 ; Haage 2020 ) and access (Niner and Wassermann 2021 ). These data indicate most researchers have personal circumstances or perspectives that recognize the value of a broader discussion about how conferences and interactions among researchers can be shaped.

Fisheries Magazine↗

USGS2021

Merging scientific silos: Integrating specialized approaches for thinking about and using spatial data that can provide new directions for persistent fisheries problems

By merging our specialization silos, fisheries professionals can expand the options that are available to them to address difficult fisheries and aquatic conservation problems, which require an understanding of spatial patterns in geographically large systems. Our purpose is to start a profession-wide conversation about additional ways to think about and use spatial data. We use case studies to illustrate how identifying and merging multiple specialized approaches (e.g., fish tracking, fish surveys, geomorphology, social science, jurisdictional viewpoints) can create an ensemble that has advantages over the use of any single approach alone. Thus, our perspective is not about solving a specific technical problem with a new tool, but about the benefits of identifying gaps in data from one specialized approach, and filling those gaps with data from other specialized approaches. If multiple approaches are coordinated through a larger, problem-specific planning strategy, the result can be better outcomes for difficult problems through creative integration. We encourage others to add constructive ideas to the views initiated here.

Fisheries Magazine↗