Geology topics

James H. Johnson

Publications and source records attributed to James H. Johnson.

At least 55 records · Page 3Linked to original sources

USGS2012

Movement and feeding ecology of recently emerged steelhead in Lake Ontario tributaries

Steelhead ( Oncorhynchus mykiss ) ascend several Lake Ontario tributaries to spawn and juveniles are often the most abundant salmonid where spawning is successful. Movement and diet of recently emerged subyearling steelhead were examined in three New York tributaries of Lake Ontario. Downstream movement occurred mainly at night and consisted of significantly smaller fry that were feeding at lower levels than resident fry. Fry fed at the highest rate during the day and chironomids and baetids were the main components of their diet. The diet composition of steelhead fry was closely associated with the composition of the benthos in Trout Brook but more similar to the composition of the drift in the other streams. Daily ration was similar among streams, ranging from 10.2 to 14.3%. These findings are consistent with previous findings on the ecology of steelhead fry, as well as fry of other salmonid species

Journal of Applied Ichthyology↗

USGS2012

Diel feeding periodicity of Ephemera simulans nymphs in summer and winter

We examined diel feeding periodicity of Ephemera simulans nymphs during summer and winter in a third-order stream in central New York. A total of 245 nymphs were collected at 4-h intervals over two 24 h periods and were immediately preserved in 80% ethanol. In the laboratory, we weighed each nymph and its digestive tract. The ratio of wet weight of the digestive tract to the total body weight at each 4-h interval was used to determine feeding periodicity. Diel feeding periodicity followed a similar pattern in summer and winter and was significantly higher at 08:00 hours. Feeding periodicity of E. simulans in Labrador Creek is asynchronous with the two most abundant fish species in the stream and may reflect predator avoidance behavior that has been shown for other mayfly species.

New York↗

USGS2011

Landscape models of brook trout abundance and distribution in lotic habitat with field validation

Brook trout Salvelinus fontinalis are native fish in decline owing to environmental changes. Predictions of their potential distribution and a better understanding of their relationship to habitat conditions would enhance the management and conservation of this valuable species. We used over 7,800 brook trout observations throughout New York State and georeferenced, multiscale landscape condition data to develop four regionally specific artificial neural network models to predict brook trout abundance in rivers and streams. Land cover data provided a general signature of human activity, but other habitat variables were resistant to anthropogenic changes (i.e., changing on a geological time scale). The resulting models predict the potential for any stream to support brook trout. The models were validated by holding 20% of the data out as a test set and by comparison with additional field collections from a variety of habitat types. The models performed well, explaining more than 90% of data variability. Errors were often associated with small spatial displacements of predicted values. When compared with the additional field collections (39 sites), 92% of the predictions were off by only a single class from the field-observed abundances. Among “least-disturbed” field collection sites, all predictions were correct or off by a single abundance class, except for one where brown trout Salmo trutta were present. Other degrading factors were evident at most sites where brook trout were absent or less abundant than predicted. The most important habitat variables included landscape slope, stream and drainage network sizes, water temperature, and extent of forest cover. Predicted brook trout abundances were applied to all New York streams, providing a synoptic map of the distribution of brook trout habitat potential. These fish models set benchmarks of best potential for streams to support brook trout under broad-scale human influences and can assist with planning and identification of protection or rehabilitation sites.

New York↗

USGS2011

Influence of diet of double-crested cormorants on thiamine, lead, and mineral contents of their eggs

Throughout much of the Great Lakes basin, reproduction of several fish species is impaired by deficiency of thiamine in their eggs, an effect attributed to consumption of thiaminase-containing forage species, primarily alewife (Alosa pseudoharengus.) Because the double-crested cormorant (Phalacrocorax auritus) nesting on islands in Lake Ontario is known to consume considerable amounts of alewife, we examined cormorant food habits and measured thiamine content in eggs collected in 1999 from six separate nests of cormorants from colonies near Lake Ontario and contrasted them with food habits and eggs of cormorants from Oneida Lake where the alewife is rare. Thiamine concentrations in eggs varied between 4.31 and 11.24 nmoleslg with no significant (P>0.18) difference between mean concentrations for Lake Ontario and Oneida Lake (8.08 vs 8.36 nmoles/g) even though alewife comprised approximately 65 vs 0 % of their diets, respectively. Consumption of other thiaminase-containing species was minor in both lakes. Therefore, consumption of alewife and other thiaminase containing fishes by cormorants on Lake Ontario did not appear to significantly impair the levels of thiamine in their eggs. However, we found that the concentration of thiamine in eggs (T; nmoles/g) was inversely related (P<0.02) to lead (Pb) concentration (μg/g) according to the equation: T = −3.142 Pb + 16.25. This relationship may reflect the known ability of thiamine to chelate lead and increase its excretion.

Journal of Freshwater Ecology↗

USGS2010

Habitat selection and spawning success of walleye in a tributary to Owasco Lake, New York

Walleyes Sander vitreus are stocked into Owasco Lake, New York, to provide a sport fishery, but the population must be sustained by annual hatchery supplementation despite the presence of appropriate habitat. Therefore, we evaluated walleye spawning success in Dutch Hollow Brook, a tributary of Owasco Lake, to determine whether early survival limited recruitment. Spawning success during spring 2006 and 2007 was evaluated by estimating egg densities from samples collected in the lower 725 m of the stream. Environmental variables were also recorded to characterize the selected spawning habitat. Drift nets were set downstream of the spawning section to assess egg survival and larval drift. We estimated that 162,596 larvae hatched in 2006. For 2007, we estimated that 360,026 eggs were deposited, with a hatch of 127,500 larvae and hatching success of 35.4%. Egg density was significantly correlated to percent cover, substrate type, and depth : velocity ratio. Two sections had significantly higher egg deposition than other areas. Adult spawning walleyes selected shallow, slow habitats with some cover and gravel substrate in the accessible reaches of Dutch Hollow Brook. Our results show that walleyes found suitable spawning habitat in Dutch Hollow Brook and that egg and larval development does not appear to limit natural reproduction.

New York↗

USGS2010

Migratory salmonid redd habitat characteristics in the Salmon River, New York

Non-native migratory salmonids ascend tributaries to spawn in all the Great Lakes. In Lake Ontario, these species include Chinook salmon ( Oncorhynchus tshawytscha ), coho salmon ( O. kisutch ), steelhead ( O. mykiss ), and brown trout ( Salmo trutta ). Although successful natural reproduction has been documented for many of these species, little research has been conducted on their spawning habitat. We examined the spawning habitat of these four species in the Salmon River, New York. Differences in fish size among the species were significantly correlated with spawning site selection. In the Salmon River, the larger species spawned in deeper areas with larger size substrate and made the largest redds. Discriminant function analysis correctly classified redds by species 64–100% of the time. The size of substrate materials below Lighthouse Hill Dam is within the preferred ranges for spawning for these four species indicating that river armoring has not negatively impacted salmonid production. Intra-specific and inter-specific competition for spawning sites may influence redd site selection for smaller salmonids and could be an impediment for Atlantic salmon ( S. salar ) restoration.

New York↗

USGS2010

Diet shift of double-crested cormorants in eastern Lake Ontario associated with the expansion of the invasive round goby

The proliferation of the invasive round goby ( Apollonia melanostoma ) in the Great Lakes has caused shifts in the trophic ecology in some areas. We examined the diet of double-crested cormorants ( Phalacrocorax auritas ) prior to, and immediately after, round goby population expansion at two colonies, Pigeon and Snake Islands, in eastern Lake Ontario from 1999 to 2007. Cormorant diet was determined from the examination of 10,167 pellets collected over the nine-year period. By the second year round gobies were found in the diet (2002 at Snake Island and 2003 at Pigeon Island) they were the main species consumed by cormorants at each colony. The dominance of round goby in cormorant diets had a significant effect on both daily fish consumption and seasonal trends in fish consumption compared to the pre-goby years. Seasonal differences that were observed during the pre-goby years were lost once gobies became the main diet component of cormorants. The rapid switch to a benthic prey such as round goby, from a largely limnetic fish diet demonstrates the adaptive foraging ability of cormorants. Round goby may act as a buffer for yellow perch and smallmouth bass, two sport fish impacted by cormorant predation in eastern Lake Ontario.

Lake Ontario↗

USGS2010

Ontogenetic Variation in Food Consumption of Rusty Crayfish (Orconectes rusticus) in a Central New York Stream

We examined feeding periodicity of three size groups of the rusty crayfish (Orconectes rusticus) at four-hour intervals over a 28-hour period during July in a headwater stream of the Susquehanna River drainage in central New York. Feeding activity was expressed as the ratio of stomach weight divided by the crayfish wet weight. The diel food consumption patterns of all three size groups of rusty crayfish (i.e., ≤ 10 mm, 11–20 mm, and > 20 mm carapace length) were significantly different. Peak feeding of the smallest crayfish occurred during crepuscular periods. Food consumption of the intermediate size crayfish was highest at 2000 h, and feeding of large crayfish was consistently high from 1200 h to 0400 h. Feeding intensity of both small and intermediate size crayfish was highest when feeding intensity of large crayfsh was lowest. Ontogenetic differences in feeding periodicity may be associated with predation pressure from large rusty crayfish on smaller individuals.

Journal of Freshwater Ecology↗

USGS2009

Feeding ecology of lake whitefish larvae in eastern Lake Ontario

We examined the feeding ecology of larval lake whitefish ( Coregonus clupeaformis ) in Chaumont Bay, Lake Ontario, during April and May 2004-2006. Larvae were collected with towed ichthyoplankton nets offshore and with larval seines along the shoreline. Larval feeding periodicity was examined from collections made at 4-h intervals over one 24-h period in 2005. Inter-annual variation in diet composition (% dry weight) was low, as was spatial variation among collection sites within the bay. Copepods (81.4%), primarily cyclopoids (59.1%), were the primary prey of larvae over the 3-year period. Cladocerans (8.1%; mainly daphnids, 6.7%) and chironomids (7.3%) were the other major prey consumed. Larvae did not exhibit a preference for any specific prey taxa. Food consumption of lake whitefish larvae was significantly lower at night (i.e., 2400 and 0400 h). Substantial variation in diet composition occurred over the 24-h diel study. For the 24-h period, copepods were the major prey consumed (50.4%) and their contribution in the diet ranged from 29.3% (0400 h) to 85.9% (1200 h). Chironomids made up 33.4% of the diel diet, ranging from 8.0% (0800 h) to 69.9% (0400 h). Diel variation in the diet composition of lake whitefish larvae may require samples taken at several intervals over a 24-h period to gain adequate representation of their feeding ecology.

Journal of Great Lakes Research↗

USGS2008

Diel diet composition and feeding activity of round goby in the nearshore region of Lake Ontario

Expansion of the invasive round goby Apollonia melanostoma (=Neogobius melanostomus) throughout the Great Lakes drainage has created considerable concern among fisheries management agencies. These concerns have led to several studies on the biology and impact of the goby in the basin. However, little information exists on diel patterns in food consumption of the round goby. We examined the diets of 300 round gobies collected during crepuscular, diurnal, and nocturnal periods in Lake Ontario. There was little variation in the diel diet composition of the goby, as chironomid larvae were the major prey consumed during each period. Feeding intensity of the round goby was significantly (P<0.05) greater at night than during crepuscular or diurnal periods.

New York↗

USGS2008

Seasonal habitat use of brook trout and juvenile Atlantic Salmon in a Tributary of Lake Ontario

The seasonal habitat use of Salvelinus fontinalis (Brook Trout) and sub-yearling Salmo salar (Atlantic Salmon) was examined in Hart Brook, a tributary of Lake Ontario. Fish habitat use and available habitat were examined during summer and autumn. Interspecific differences in habitat use occurred as well as intraspecific seasonal differences. Overyearling Brook Trout were more selective in their habitat preferences than subyearling Brook Trout or juvenile Atlantic Salmon. Depth and the amount of cover were significantly different among the three fish groups. Salmon occupied faster and shallower water than either age group of trout. Atlantic Salmon were also associated with larger-sized substrate materials than either trout age group, and salmon occurred in habitats with less cover than trout. Overyearling Brook Trout occupied deeper water with more cover than subyearling trout. All three salmonid groups occupied areas with more cover in autumn compared to summer. In autumn, subyearling Brook Trout used deeper areas than they had in the summer. In Hart Brook, the habitat of subyearling Atlantic Salmon can be generally characterized as riffles, the habitat of overyearling Brook Trout was deep pools with extensive cover (35%), and that of subyearling trout was any area with moderate flow and at least 20% cover. As efforts proceed to reintroduce Atlantic Salmon in Lake Ontario, further research is needed to ensure the conservation of Brook Trout populations.

New York↗

USGS2008

Double-crested cormorant studies at Little Galloo Island, Lake Ontario in 2008: Diet composition, fish consumption and the efficacy of management activities in reducing fish predation

For almost two decades Little Galloo Island (LGI)has supported the largest colony of double-crested cormorants ( Phalacrocorax auritus ) in the eastern basin of Lake Ontario. Cormorant nest counts on the island since the early 1990's have averaged about 5,000 per year reaching a high of 8,400 in 1996. Johnson et al. (2008) estimate that cormorants from LGI alone have consumed 400 million fish since 1992. The proliferation of cormorants in the eastern basin of Lake Ontario has coincided with declines in two important recreational fish species, smallmouth bass and yellow perch. Lantry et al. (2002) and Burnett et al. (2002) provide convincing evidence linking cormorant population increases to declining eastern basin smallmouth bass and yellow perch stocks. Decline of these fish stocks is evident only in the eastern basin, suggesting a localized problem which is consistent with the halo effect where large piscivorous waterbird colonies may deplete local fish stocks (Birt et al. 1987). The year 2008 marked the seventeenth consecutive year of study of the food habits and fish consumption of LGI cormorants, and represented the tenth consecutive year evaluating the efficacy of management activities to control the reproductive success of cormorants nesting at LGI. The program consists mainly of spraying cormorant eggs with oil as well as the culling of adult and immature birds.This paper reports the findings of work carried outin 2008 at LGI.

Lake Ontario↗

USGS2006

Estimating the size of fish consumed by double-crested cormorants: Considerations for better understanding cormorant-fish interactions

We measured 926 smallmouth bass ( Micropterus dolomieu ), 6,935 yellow perch ( Perca flavescens ), 6,416 rock bass ( Ambloplites rupestris ), and 4,852 pumpkinseed ( Lepomis gibbosus ) otoliths recovered from double-crested cormorant ( Phalacrocorax auritus ) pellets to determine the sizes (total lengths) of these fish consumed by cormorants. Otoliths were recovered from cormorant pellets collected from 1993 to 2002 at six colonies along the eastern Lake Ontario–St. Lawrence River corridor. Otolith –length fish length regressions were used to estimate the length of fish species consumed by cormorants. Only 1.5% of these otoliths had no visible erosion, 33.3% had minor erosion, and 65.2% had moderate erosion. We found that the exclusive use of uneroded otoliths severely limited the sample size available for estimating fish size and likely would cause an overestimation of fish size. Species-specific differences were evident when using erosion criteria to determine fish size and could result in bias when estimating length, especially for species such as smallmouth bass whose otoliths possess a rostrum that is readily eroded. Using a random sample (n = 100) of all intact otoliths recovered in pellets provided a conservative estimate of fish length that was smaller than that derived from uneroded or minimally eroded otoliths. Annual variation in the size of fish consumed by cormorants was more pronounced than seasonal variation for most species. We describe and recommend a new technique that incorporates both chick regurgitant and pellet samples for estimating the size of fish consumed by cormorants.

Journal of Great Lakes Research↗

USGS2005

Juvenile rainbow trout production in New York tributaries of Lake Ontario: implications for Atlantic salmon restoration

Three Pacific salmonid species Onchorynchus spp. have replaced the extirpated Atlantic salmon Salmo salar as the main migratory salmonid in the Lake Ontario drainage. One of those species, the nonnative rainbow trout O. mykiss, has become widely distributed within the historical Atlantic salmon habitat, occupying an ecological niche similar to that of juvenile Atlantic salmon. Consequently, both a tributary's carrying capacity for Atlantic salmon and competition from established nonnative species are important when considering the feasibility of Atlantic salmon restoration. Estimation of juvenile rainbow trout production will help evaluate the capacity of tributaries to produce salmonids that occupy similar niches. Geostatistical methods were applied to standardized and efficiency-corrected electrofishing data from three of New York's best salmonid-producing streams to precisely estimate juvenile rainbow trout populations. Results indicated that each study stream could produce 20,000–40,000 age-0 and 4,000–10,000 age-1 and older rainbow trout per year. Statistical interpolation indicated areas of significantly different production potential and points of significant changes in productivity. Closer examination of the niche similarity and competitive potential of these two species is needed to properly interpret these estimates with regard to Atlantic salmon restoration.

New York↗

USGS2005

A novel approach to fitting the von Bertalanffy relationship to a mixed stock of Atlantic sturgeon harvested off the New Jersey Coast

We examined the growth characteristics of 303 Atlantic sturgeon, Acipenser oxyrinchus , caught in the commercial fishery off the New Jersey coast from 1992 to 1994 (fork length range: 93–219 cm). Sections taken from the leading pectoral fin ray were used to age each sturgeon. Ages ranged from 5–26 years. Von Bertalanffy growth models for males and females fit well, but test statistics (t-test, maximum likelihood) failed to reject the null hypothesis that growth was not significantly different between sexes. Consequently, all data were pooled and the combined data gave L ∞ and K estimates of 174.2 cm and 0.144, respectively. Our growth data do not fit the pattern of slower growth and increased size in more northernly latitudes for Atlantic sturgeon observed in other work. Lack of uniformity of our growth data may be due to (1) the sturgeon fishery harvesting multiple stocks having different growth rates, and (2) size limits for the commercial fishery having created a bias in estimating growth parameters.

New Jersey↗

USGS2003

Egg-to-fry survival of two strains of Atlantic salmon (Salmo salar) in stream incubators under laboratory conditions

Egg-to-fry survival of two strains of Atlantic salmon (Salmo salar) was evaluated under laboratory conditions in two commercial stream egg incubators. The survival was also examined based on egg developmental stage (i.e., green eggs, eyed egggs, advanced eggs). There was no significant difference in survival of eggs in the Jordan-Scotty and Whitlock-Vibert incubators. However, the survival of Sebago strain Atlantic slamon eggs was significantly higher than that of Penobscot stream eggs, and survival increased with advanced egg developmental stage.

Journal of Freshwater Ecology↗

USGS1999

Fish losses to double-crested cormorant predation in Eastern Lake Ontario, 1992-97

We examined 4,848 regurgitated digestive pellets of double-crested cormorants ( Phalacrocorax auritus ) over a 6-year period (1992–97) to estimate annual predation on sport and other fishes in the eastern basin of Lake Ontario. We found more than 51,000 fish of 28 species. Using a model that incorporates annual colony nest counts; fledgling production rates; adult, immature, and young-of-year residence times (seasonal); estimates of mean number of fish per pellet and mean fish size; and a fecal pathway correction factor (4.0 percent), we estimate total annual number of fish consumed by cormorants in the eastern basin of Lake Ontario to range from 37 million to 128 million fish for 1993–97. This fish loss equates to an estimated 0.93 million to 3.21 million kg (mean 2.07 million kg) of fish consumed per year, principally alewife ( Alosa pseudoharengus , 42.3 percent) and yellow perch ( Perca flavescens , 18.4 percent). Forage fish (alewife, cyprinids, trout-perch [ Percopsis omiscomaycus ], and other minor components) accounted for 65 percent of the diet, and panfish contributed 34 percent of the diet for the 5-year period. Game fish were minor components of the diet, in view of an average estimated annual consumption of 900,000 smallmouth bass ( Micropterus dolomieui , 1.1 percent) and 168,000 salmonines (mostly lake trout, Salvelinus namaycush , 0.2 percent). Cormorant predation on lake trout fingerlings stocked in May 1993 and June 1994 was estimated through the use of coded wire tag recoveries from pellets collected on Little Galloo Island 1 and 4 days after stocking events. We estimated losses of 13.6 percent and 8.8 percent, respectively, of the fish stocked for the two events, an average of 11.2 percent. Such losses may be reduced through alteration of existing stocking practices.

Lake Ontario;Little Galloo Island↗

USGS1998

Age and growth of lake sturgeon in the Upper St. Lawrence River

The growth of lake sturgeon ( Acipenser fulvescens ) over time in the upper St. Lawrence River was examined. Growth of lake sturgeon collected during 1993 and 1994 below Robert Moses Dam near Massena, New York, was compared to that reported for the same population almost 25 years earlier. The data suggest that lake sturgeon growth was similar to that reported in the previous study. However, significant differences in the elevations of regression models between males and fish of unknown sex in both data sets suggest possible sexual dimorphism in growth at younger ages.

New York, Ontario↗