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J.T. Foster

Publications and source records attributed to J.T. Foster.

6 recordsLinked to original sources
USGS2009

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

Background: Phylogeographic reconstruction of some bacterial populations is hindered by low diversity coupled with high levels of lateral gene transfer. A comparison of recombination levels and diversity at seven housekeeping genes for eleven bacterial species, most of which are commonly cited as having high levels of lateral gene transfer shows that the relative contributions of homologous recombination versus mutation for Burkholderia pseudomallei is over two times higher than for Streptococcus pneumoniae and is thus the highest value yet reported in bacteria. Despite the potential for homologous recombination to increase diversity, B. pseudomallei exhibits a relative lack of diversity at these loci. In these situations, whole genome genotyping of orthologous shared single nucleotide polymorphism loci, discovered using next generation sequencing technologies, can provide very large data sets capable of estimating core phylogenetic relationships. We compared and searched 43 whole genome sequences of B. pseudomallei and its closest relatives for single nucleotide polymorphisms in orthologous shared regions to use in phylogenetic reconstruction. Results: Bayesian phylogenetic analyses of >14,000 single nucleotide polymorphisms yielded completely resolved trees for these 43 strains with high levels of statistical support. These results enable a better understanding of a separate analysis of population differentiation among >1,700 B. pseudomallei isolates as defined by sequence data from seven housekeeping genes. We analyzed this larger data set for population structure and allele sharing that can be attributed to lateral gene transfer. Our results suggest that despite an almost panmictic population, we can detect two distinct populations of B. pseudomallei that conform to biogeographic patterns found in many plant and animal species. That is, separation along Wallace's Line, a biogeographic boundary between Southeast Asia and Australia. Conclusion: We describe an Australian origin for B. pseudomallei, characterized by a single introduction event into Southeast Asia during a recent glacial period, and variable levels of lateral gene transfer within populations. These patterns provide insights into mechanisms of genetic diversification in B. pseudomallei and its closest relatives, and provide a framework for integrating the traditionally separate fields of population genetics and phylogenetics for other bacterial species with high levels of lateral gene transfer. ?? 2009 Pearson et al; licensee BioMed Central Ltd.

BMC Biology↗
USGS2008

Ground-based rodent control in a remote Hawaiian rainforest on Maui

Effective control of introduced mammalian predators is essential to the recovery of native bird species in Hawai'i. Between August 1996 and December 2004, introduced rodents were controlled within three home ranges of the Po'ouli Melamprosops phaeosoma, a critically endangered Hawaiian honeycreeper. Rats were controlled using a combination of ground-based rodenticide (0.005% diphacinone) application and snap traps. Beginning in August 2001, we monitored the effectiveness of these rodent control efforts. Relative abundances of Black Rats Rattus rattus and Polynesian Rats R. exulans were measured in each of five snap-trapping grids seven times over a 35-month period. Rat populations decreased inside of the rodent control areas, but control effectiveness differed between rat species. During the first year of monitoring, target control levels for R. rattus were consistently achieved in only one of the rodent control areas. Control techniques were refined in areas failing to meet targets. Subsequently, we achieved target control levels for R. rattus more consistently in all three rodent control areas. However, relative abundances of R. exulans did not differ between rodent control and reference areas, indicating that our rodent control techniques were insufficient to reduce population levels of this species. These findings signify a need for further improvement of rodent control methods in Hawai'i, especially for Polynesian Rats, and demonstrate the critical importance of periodic monitoring of the response of rodent populations to management. In the future, managers may need to design rodent control operations targeting R. rattus and R. exulans independently to achieve best results.

Pacific Conservation Biology↗
USGS2007

Genetic structure and evolved malaria resistance in Hawaiian honeycreepers

Infectious diseases now threaten wildlife populations worldwide but population recovery following local extinction has rarely been observed. In such a case, do resistant individuals recolonize from a central remnant population, or do they spread from small, perhaps overlooked, populations of resistant individuals? Introduced avian malaria (Plasmodium relictum) has devastated low-elevation populations of native birds in Hawaii, but at least one species (Hawaii amakihi, Hemignathus virens) that was greatly reduced at elevations below about 1000 m tolerates malaria and has initiated a remarkable and rapid recovery. We assessed mitochondrial and nuclear DNA markers from amakihi and two other Hawaiian honeycreepers, apapane (Himatione sanguinea) and iiwi (Vestiaria coccinea), at nine primary study sites from 2001 to 2003 to determine the source of re-establishing birds. In addition, we obtained sequences from tissue from amakihi museum study skins (1898 and 1948-49) to assess temporal changes in allele distributions. We found that amakihi in lowland areas are, and have historically been, differentiated from birds at high elevations and had unique alleles retained through time; that is, their genetic signature was not a subset of the genetic variation at higher elevations. We suggest that high disease pressure rapidly selected for resistance to malaria at low elevation, leaving small pockets of resistant birds, and this resistance spread outward from the scattered remnant populations. Low-elevation amakihi are currently isolated from higher elevations (> 1000 m) where disease emergence and transmission rates appear to vary seasonally and annually. In contrast to results from amakihi, no genetic differentiation between elevations was found in apapane and iiwi, indicating that slight variation in genetic or life-history attributes can determine disease resistance and population recovery. Determining the conditions that allow for the development of resistance to disease is essential to understanding how species evolve resistance across a landscape of varying disease pressures. ?? 2007 The Authors.

Molecular Ecology↗
USGS2006

Breeding biology and success of a reintroduced population of the critically endangered Puaiohi ( Myadestes palmeri )

The ultimate success of reintroduction programs for endangered species depends on the ability of reintroduced animals to breed in the wild. We studied the nesting success and breeding biology of a reintroduced population of Puaiohi ( Myadestes palmeri ) on the island of Kaua'i, Hawaii. Thirty-four captive-bred Puaiohi were released into the Alaka'i Swamp in 1999-2001 and monitored using radiotelemetry. Ten females and two males paired with wild and other released birds, including one polygynous trio. From March to September, 31 nests were built. Mean clutch size was 2.0 eggs, daily nest survival was 0.97 ± 0.01 (mean ± SE) and overall nest success was 0.40 ± 0.02. We confirmed predation, most probably by rats ( Rattus spp.), as the greatest cause of nest failure, occurring at 38% of active nests with known fates, and causing the death of two nesting adult females. Ground-based rodent control proved ineffective at protecting nest attempts. Successful nests fledged an average of 1.4 young each ( n = 10), and 85% of fledglings survived at least two weeks. Importantly, breeding behavior and success were comparable to those of wild Puaiohi. This is the first record of breeding in the wild from captive-bred endangered Hawaiian passerines. The ability of captive-bred Puaiohi to survive and breed successfully in the wild bodes well for future releases of this and other endangered passerines, but high predation rates on nests and nesting females highlights the importance of maintaining and restoring safe habitat for recovery.

The Auk↗
USGS2003

Survival, dispersal, and home-range establishment of reintroduced captive-bred puaiohi, Myadestes palmeri

We monitored the survival, dispersal, and home-range establishment of captive-bred, reintroduced puaiohi Myadestes palmeri, a critically endangered thrush endemic to the island of Kauai. Fourteen captive-bred, juvenile birds were released from hacktowers in January-February 1999 and monitored for 8-10 weeks using radiotelemetry. All 14 birds (100%) survived to 56 days post-release. Two birds (14.3%) dispersed greater than 3 km from release site within 1 day of release. The remaining birds settled within 1 week and established either temporary home-ranges (mean area = 7.9??12.0 ha, range 0.4-31.9) or breeding home-ranges (mean area 1.2??0.34 ha, range 0.8-1.6). Temporary home ranges were abandonded by the beginning of the breeding season, and ultimately 6 of the 14 birds (43%) established breeding home ranges in the release area. The high survival rate bodes well for establishing additional populations through captive breeding and release; however, the 57% dispersal rate out of the target area means that several releases of birds may be necessary in order to repopulate a given drainage. Furthermore, observed dispersal and gene flow between the reintroduced and wild populations have important implications for management of the captive flock. Published by Elsevier Science Ltd.

Biological Conservation↗